RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 CSRNP1Q96S65 589 aa17.37■□□□□ 0.37
USP4-206ENST00000461553 RNF186Q9NXI6 227 aa17.37■□□□□ 0.37
USP4-206ENST00000461553 AOX1Q06278 1338 aa17.37■□□□□ 0.37
USP4-206ENST00000461553 MYH2Q9UKX2 1941 aa17.37■□□□□ 0.37
USP4-206ENST00000461553 TRIM27P14373 513 aa17.36■□□□□ 0.37
USP4-206ENST00000461553 IL15P40933 162 aaPredicted RBP17.36■□□□□ 0.37
USP4-206ENST00000461553 ATP2B3Q16720 1220 aa17.36■□□□□ 0.37
USP4-206ENST00000461553 ATF7IPQ6VMQ6 1270 aa17.36■□□□□ 0.37
USP4-206ENST00000461553 DZIP1LQ8IYY4 767 aaKnown RBP17.36■□□□□ 0.37
USP4-206ENST00000461553 TEKT1Q969V4 418 aa17.36■□□□□ 0.37
USP4-206ENST00000461553 CEP126Q9P2H0 1117 aa17.36■□□□□ 0.37
USP4-206ENST00000461553 ZNF70Q9UC06 446 aaPredicted RBP17.36■□□□□ 0.37
USP4-206ENST00000461553 TNNI2P48788 182 aa17.35■□□□□ 0.37
USP4-206ENST00000461553 HDLBPQ00341 1268 aaKnown RBP17.35■□□□□ 0.37
USP4-206ENST00000461553 SREBF2Q12772 1141 aa17.35■□□□□ 0.37
USP4-206ENST00000461553 MKRN3Q13064 507 aaKnown RBP17.35■□□□□ 0.37
USP4-206ENST00000461553 RASA3Q14644 834 aa17.35■□□□□ 0.37
USP4-206ENST00000461553 MAP3K11Q16584 847 aa17.35■□□□□ 0.37
USP4-206ENST00000461553 TDRD3Q9H7E2 651 aaKnown RBP17.35■□□□□ 0.37
USP4-206ENST00000461553 FZD1Q9UP38 647 aa17.35■□□□□ 0.37
USP4-206ENST00000461553 PA2G4Q9UQ80 394 aaKnown RBP17.35■□□□□ 0.37
USP4-206ENST00000461553 SUGT1Q9Y2Z0 365 aa17.35■□□□□ 0.37
USP4-206ENST00000461553 BCAR3O75815 825 aa17.34■□□□□ 0.37
USP4-206ENST00000461553 IREB2P48200 963 aaKnown RBP17.34■□□□□ 0.37
USP4-206ENST00000461553 GRIK5Q16478 980 aa17.34■□□□□ 0.37
USP4-206ENST00000461553 LDLRAD1Q5T700 205 aa17.34■□□□□ 0.37
USP4-206ENST00000461553 WDR66Q8TBY9 1149 aa17.34■□□□□ 0.37
USP4-206ENST00000461553 COPRSQ9NQ92 184 aa17.34■□□□□ 0.37
USP4-206ENST00000461553 GNL3LQ9NVN8 582 aaKnown RBP17.34■□□□□ 0.37
USP4-206ENST00000461553 TMOD2Q9NZR1 351 aa17.34■□□□□ 0.37
USP4-206ENST00000461553 DOCK2Q92608 1830 aa17.33■□□□□ 0.37
USP4-206ENST00000461553 SRGAP3O43295 1099 aa17.33■□□□□ 0.36
USP4-206ENST00000461553 NBPF12Q5TAG4 269 aaPredicted RBP17.33■□□□□ 0.36
USP4-206ENST00000461553 TCP10L2B9ZVM9 353 aa17.32■□□□□ 0.36
USP4-206ENST00000461553 DGKZQ13574 1117 aa17.32■□□□□ 0.36
USP4-206ENST00000461553 SPRYD7Q5W111 196 aa17.32■□□□□ 0.36
USP4-206ENST00000461553 ZKSCAN2Q63HK3 967 aa17.32■□□□□ 0.36
USP4-206ENST00000461553 CLUAP1Q96AJ1 413 aa17.32■□□□□ 0.36
USP4-206ENST00000461553 MCOLN1Q9GZU1 580 aa17.32■□□□□ 0.36
USP4-206ENST00000461553 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.32■□□□□ 0.36
USP4-206ENST00000461553 ZBED9Q6R2W3 1325 aa17.31■□□□□ 0.36
USP4-206ENST00000461553 UNCXA6NJT0 531 aa17.31■□□□□ 0.36
USP4-206ENST00000461553 GNAI2P04899 355 aa17.31■□□□□ 0.36
USP4-206ENST00000461553 ZBTB48P10074 688 aaPredicted RBP17.31■□□□□ 0.36
USP4-206ENST00000461553 MTX1Q13505 466 aa17.31■□□□□ 0.36
USP4-206ENST00000461553 SLC10A4Q96EP9 437 aa17.31■□□□□ 0.36
USP4-206ENST00000461553 ZDHHC15Q96MV8 337 aa17.31■□□□□ 0.36
USP4-206ENST00000461553 TNNQ9UQP3 1299 aa17.31■□□□□ 0.36
USP4-206ENST00000461553 RPAP1Q9BWH6 1393 aaPredicted RBP17.3■□□□□ 0.36
USP4-206ENST00000461553 SEMA3EO15041 775 aa17.3■□□□□ 0.36
USP4-206ENST00000461553 FTSJ3Q8IY81 847 aaKnown RBP17.3■□□□□ 0.36
USP4-206ENST00000461553 ANKRD13AQ8IZ07 590 aa17.3■□□□□ 0.36
USP4-206ENST00000461553 WNK4Q96J92 1243 aa17.3■□□□□ 0.36
USP4-206ENST00000461553 CLMNQ96JQ2 1002 aa17.3■□□□□ 0.36
USP4-206ENST00000461553 DENND2AQ9ULE3 1009 aa17.3■□□□□ 0.36
USP4-206ENST00000461553 MANSC4A6NHS7 340 aaPredicted RBP17.29■□□□□ 0.36
USP4-206ENST00000461553 PHKA1P46020 1223 aa17.29■□□□□ 0.36
USP4-206ENST00000461553 TM4SF4P48230 202 aa17.29■□□□□ 0.36
USP4-206ENST00000461553 HHIPL2Q6UWX4 724 aa17.29■□□□□ 0.36
USP4-206ENST00000461553 MRIQ9BWK5 157 aa17.29■□□□□ 0.36
USP4-206ENST00000461553 TMEM39BQ9GZU3 492 aa17.29■□□□□ 0.36
USP4-206ENST00000461553 MAST2Q6P0Q8 1798 aa17.29■□□□□ 0.36
USP4-206ENST00000461553 SALL1Q9NSC2 1324 aa17.28■□□□□ 0.36
USP4-206ENST00000461553 CCDC85CA6NKD9 419 aa17.28■□□□□ 0.36
USP4-206ENST00000461553 CACNB3P54284 484 aa17.28■□□□□ 0.36
USP4-206ENST00000461553 CDAN1Q8IWY9 1227 aa17.28■□□□□ 0.36
USP4-206ENST00000461553 ZGPATQ8N5A5 531 aaKnown RBP17.28■□□□□ 0.36
USP4-206ENST00000461553 TMEM57Q8N5G2 664 aa17.28■□□□□ 0.36
USP4-206ENST00000461553 TEPSINQ96N21 525 aa17.28■□□□□ 0.36
USP4-206ENST00000461553 AKAP2Q9Y2D5 859 aa17.28■□□□□ 0.36
USP4-206ENST00000461553 A0A1B0GUL7 405 aa17.27■□□□□ 0.36
USP4-206ENST00000461553 USP2O75604 605 aaPredicted RBP17.27■□□□□ 0.36
USP4-206ENST00000461553 ALDH1A1P00352 501 aa17.27■□□□□ 0.36
USP4-206ENST00000461553 LDHBP07195 334 aaKnown RBP17.27■□□□□ 0.36
USP4-206ENST00000461553 PRDX5P30044 214 aa17.27■□□□□ 0.36
USP4-206ENST00000461553 ADORA1P30542 326 aa17.27■□□□□ 0.36
USP4-206ENST00000461553 CCDC102BQ68D86 513 aa17.27■□□□□ 0.36
USP4-206ENST00000461553 APOBEC3HQ6NTF7 200 aaKnown RBP17.27■□□□□ 0.36
USP4-206ENST00000461553 FAM83AQ86UY5 434 aa17.27■□□□□ 0.36
USP4-206ENST00000461553 PDS5AQ29RF7 1337 aaKnown RBP17.26■□□□□ 0.35
USP4-206ENST00000461553 TBC1D8O95759 1140 aa17.26■□□□□ 0.35
USP4-206ENST00000461553 TFCP2Q12800 502 aa17.26■□□□□ 0.35
USP4-206ENST00000461553 MVPQ14764 893 aaKnown RBP17.26■□□□□ 0.35
USP4-206ENST00000461553 FKBP1CQ5VVH2 108 aa17.26■□□□□ 0.35
USP4-206ENST00000461553 CTU1Q7Z7A3 348 aaKnown RBP17.26■□□□□ 0.35
USP4-206ENST00000461553 HOOK2Q96ED9 719 aa17.26■□□□□ 0.35
USP4-206ENST00000461553 ELP3Q9H9T3 547 aa17.26■□□□□ 0.35
USP4-206ENST00000461553 DAGLAQ9Y4D2 1042 aa17.26■□□□□ 0.35
USP4-206ENST00000461553 CSADQ9Y600 493 aa17.26■□□□□ 0.35
USP4-206ENST00000461553 ZBTB22O15209 634 aa17.25■□□□□ 0.35
USP4-206ENST00000461553 INHBEP58166 350 aa17.25■□□□□ 0.35
USP4-206ENST00000461553 RASGRF1Q13972 1273 aa17.25■□□□□ 0.35
USP4-206ENST00000461553 DIXDC1Q155Q3 683 aa17.25■□□□□ 0.35
USP4-206ENST00000461553 ITPRIPQ8IWB1 547 aa17.25■□□□□ 0.35
USP4-206ENST00000461553 PNMA6EA0A0J9YXQ4 647 aa17.24■□□□□ 0.35
USP4-206ENST00000461553 VGLL4Q14135 290 aa17.24■□□□□ 0.35
USP4-206ENST00000461553 NOM1Q5C9Z4 860 aaKnown RBP17.24■□□□□ 0.35
USP4-206ENST00000461553 DZIP1Q86YF9 867 aaKnown RBP17.24■□□□□ 0.35
USP4-206ENST00000461553 IFNL1Q8IU54 200 aa17.24■□□□□ 0.35
USP4-206ENST00000461553 DDX55Q8NHQ9 600 aaKnown RBP eCLIP17.24■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms