RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 BCS1LQ9Y276 419 aa13.43□□□□□ -0.26
NPHP4-204ENST00000460696 USP5P45974 858 aa13.43□□□□□ -0.26
NPHP4-204ENST00000460696 DZIP1Q86YF9 867 aaKnown RBP13.43□□□□□ -0.26
NPHP4-204ENST00000460696 ARMT1Q9H993 441 aa13.43□□□□□ -0.26
NPHP4-204ENST00000460696 DACH1Q9UI36 760 aa13.43□□□□□ -0.26
NPHP4-204ENST00000460696 SOS2Q07890 1332 aaPredicted RBP13.43□□□□□ -0.26
NPHP4-204ENST00000460696 TNS3Q68CZ2 1445 aa13.43□□□□□ -0.26
NPHP4-204ENST00000460696 ANKRD18AQ8IVF6 992 aa13.42□□□□□ -0.26
NPHP4-204ENST00000460696 MKNK2Q9HBH9 465 aa13.42□□□□□ -0.26
NPHP4-204ENST00000460696 SH3TC1Q8TE82 1336 aa13.42□□□□□ -0.26
NPHP4-204ENST00000460696 DIP2AQ14689 1571 aa13.42□□□□□ -0.26
NPHP4-204ENST00000460696 DYNC1I1O14576 645 aa13.42□□□□□ -0.26
NPHP4-204ENST00000460696 TOP1P11387 765 aaKnown RBP13.42□□□□□ -0.26
NPHP4-204ENST00000460696 FAM160A1Q05DH4 1040 aa13.42□□□□□ -0.26
NPHP4-204ENST00000460696 CATIPQ7Z7H3 387 aa13.42□□□□□ -0.26
NPHP4-204ENST00000460696 PPFIBP1Q86W92 1011 aa13.42□□□□□ -0.26
NPHP4-204ENST00000460696 FTOQ9C0B1 505 aaKnown RBP eCLIP13.42□□□□□ -0.26
NPHP4-204ENST00000460696 GREM2Q9H772 168 aa13.42□□□□□ -0.26
NPHP4-204ENST00000460696 ANGEL1Q9UNK9 670 aaKnown RBP13.42□□□□□ -0.26
NPHP4-204ENST00000460696 CEP131Q9UPN4 1083 aa13.42□□□□□ -0.26
NPHP4-204ENST00000460696 ZNF532Q9HCE3 1301 aa13.42□□□□□ -0.26
NPHP4-204ENST00000460696 AK9Q5TCS8 1911 aa13.42□□□□□ -0.26
NPHP4-204ENST00000460696 PDE8AO60658 829 aa13.41□□□□□ -0.26
NPHP4-204ENST00000460696 KRT23Q9C075 422 aa13.41□□□□□ -0.26
NPHP4-204ENST00000460696 CBX1P83916 185 aa13.41□□□□□ -0.26
NPHP4-204ENST00000460696 KIF18AQ8NI77 898 aa13.41□□□□□ -0.26
NPHP4-204ENST00000460696 CPLX3Q8WVH0 158 aa13.41□□□□□ -0.26
NPHP4-204ENST00000460696 PRIMPOLQ96LW4 560 aa13.41□□□□□ -0.26
NPHP4-204ENST00000460696 ITSN1Q15811 1721 aa13.41□□□□□ -0.26
NPHP4-204ENST00000460696 ADD1P35611 737 aaKnown RBP13.41□□□□□ -0.26
NPHP4-204ENST00000460696 PRDM10Q9NQV6 1147 aa13.41□□□□□ -0.26
NPHP4-204ENST00000460696 CEMIPQ8WUJ3 1361 aa13.41□□□□□ -0.26
NPHP4-204ENST00000460696 MAST3O60307 1309 aa13.4□□□□□ -0.26
NPHP4-204ENST00000460696 A0A087WWV3 80 aa13.4□□□□□ -0.26
NPHP4-204ENST00000460696 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.4□□□□□ -0.26
NPHP4-204ENST00000460696 TSPY2A6NKD2 308 aa13.4□□□□□ -0.26
NPHP4-204ENST00000460696 GPHNQ9NQX3 736 aaPredicted RBP13.4□□□□□ -0.26
NPHP4-204ENST00000460696 HEG1Q9ULI3 1381 aa13.4□□□□□ -0.26
NPHP4-204ENST00000460696 PFKFB2O60825 505 aa13.4□□□□□ -0.26
NPHP4-204ENST00000460696 NLRP5P59047 1200 aa13.4□□□□□ -0.26
NPHP4-204ENST00000460696 CTDSPL2Q05D32 466 aa13.4□□□□□ -0.26
NPHP4-204ENST00000460696 PUM3Q15397 648 aaKnown RBP13.4□□□□□ -0.26
NPHP4-204ENST00000460696 ZMYM1Q5SVZ6 1142 aa13.4□□□□□ -0.26
NPHP4-204ENST00000460696 NAA16Q6N069 864 aaPredicted RBP13.4□□□□□ -0.26
NPHP4-204ENST00000460696 ZBTB38Q8NAP3 1195 aaPredicted RBP13.4□□□□□ -0.26
NPHP4-204ENST00000460696 TRIM34Q9BYJ4 488 aa13.4□□□□□ -0.26
NPHP4-204ENST00000460696 TMX1Q9H3N1 280 aa13.4□□□□□ -0.26
NPHP4-204ENST00000460696 NCOA3Q9Y6Q9 1424 aa13.4□□□□□ -0.26
NPHP4-204ENST00000460696 SYNE4Q8N205 404 aa13.4□□□□□ -0.26
NPHP4-204ENST00000460696 TSC1Q92574 1164 aa13.4□□□□□ -0.26
NPHP4-204ENST00000460696 ESR2Q92731 530 aa13.4□□□□□ -0.26
NPHP4-204ENST00000460696 OSBP2Q969R2 916 aa13.4□□□□□ -0.26
NPHP4-204ENST00000460696 CNNM2Q9H8M5 875 aa13.4□□□□□ -0.26
NPHP4-204ENST00000460696 PDIA3P30101 505 aaKnown RBP13.39□□□□□ -0.27
NPHP4-204ENST00000460696 DHX8Q14562 1220 aaKnown RBP13.39□□□□□ -0.27
NPHP4-204ENST00000460696 PIGBQ92521 554 aa13.39□□□□□ -0.27
NPHP4-204ENST00000460696 ARGLU1Q9NWB6 273 aaPredicted RBP13.39□□□□□ -0.27
NPHP4-204ENST00000460696 ZBTB1Q9Y2K1 713 aa13.39□□□□□ -0.27
NPHP4-204ENST00000460696 PRDM1O75626 825 aa13.39□□□□□ -0.27
NPHP4-204ENST00000460696 CLSTN1O94985 981 aa13.39□□□□□ -0.27
NPHP4-204ENST00000460696 AFMP43652 599 aa13.39□□□□□ -0.27
NPHP4-204ENST00000460696 BRAPQ7Z569 592 aa13.39□□□□□ -0.27
NPHP4-204ENST00000460696 IFNKQ9P0W0 207 aa13.39□□□□□ -0.27
NPHP4-204ENST00000460696 H7C1W4 665 aa13.39□□□□□ -0.27
NPHP4-204ENST00000460696 CCP110O43303 1012 aa13.39□□□□□ -0.27
NPHP4-204ENST00000460696 PCCAP05165 728 aaPredicted RBP13.39□□□□□ -0.27
NPHP4-204ENST00000460696 UBASH3AP57075 661 aa13.39□□□□□ -0.27
NPHP4-204ENST00000460696 TOB2Q14106 344 aaPredicted RBP13.39□□□□□ -0.27
NPHP4-204ENST00000460696 EZH2Q15910 746 aaKnown RBP13.39□□□□□ -0.27
NPHP4-204ENST00000460696 SPECC1Q5M775 1068 aa13.39□□□□□ -0.27
NPHP4-204ENST00000460696 ANO1Q5XXA6 986 aa13.39□□□□□ -0.27
NPHP4-204ENST00000460696 TAF6LQ9Y6J9 622 aa13.39□□□□□ -0.27
NPHP4-204ENST00000460696 NCAPD2Q15021 1401 aa13.39□□□□□ -0.27
NPHP4-204ENST00000460696 NBPF26B4DH59 902 aa13.39□□□□□ -0.27
NPHP4-204ENST00000460696 NEMFO60524 1076 aa13.39□□□□□ -0.27
NPHP4-204ENST00000460696 NBPF10Q6P3W6 841 aaKnown RBP13.39□□□□□ -0.27
NPHP4-204ENST00000460696 NBPF15Q8N660 670 aa13.39□□□□□ -0.27
NPHP4-204ENST00000460696 URI1O94763 535 aaPredicted RBP13.38□□□□□ -0.27
NPHP4-204ENST00000460696 PHKA1P46020 1223 aa13.38□□□□□ -0.27
NPHP4-204ENST00000460696 CTSWP56202 376 aa13.38□□□□□ -0.27
NPHP4-204ENST00000460696 GSDMDP57764 484 aa13.38□□□□□ -0.27
NPHP4-204ENST00000460696 IFIT1BQ5T764 474 aaKnown RBP13.38□□□□□ -0.27
NPHP4-204ENST00000460696 CEP135Q66GS9 1140 aa13.38□□□□□ -0.27
NPHP4-204ENST00000460696 LPIN2Q92539 896 aa13.38□□□□□ -0.27
NPHP4-204ENST00000460696 SMARCE1Q969G3 411 aa13.38□□□□□ -0.27
NPHP4-204ENST00000460696 NOL12Q9UGY1 213 aaKnown RBP eCLIP13.38□□□□□ -0.27
NPHP4-204ENST00000460696 V9GYY5 206 aaPredicted RBP13.38□□□□□ -0.27
NPHP4-204ENST00000460696 SALL3Q9BXA9 1300 aa13.38□□□□□ -0.27
NPHP4-204ENST00000460696 M0R2C6 588 aa13.38□□□□□ -0.27
NPHP4-204ENST00000460696 LRMPQ12912 555 aa13.38□□□□□ -0.27
NPHP4-204ENST00000460696 VPS72Q15906 364 aa13.38□□□□□ -0.27
NPHP4-204ENST00000460696 NSUN7Q8NE18 718 aaKnown RBP13.38□□□□□ -0.27
NPHP4-204ENST00000460696 MAGEB6P1A0A0J9YX57 407 aa13.38□□□□□ -0.27
NPHP4-204ENST00000460696 SPDYE4A6NLX3 237 aa13.38□□□□□ -0.27
NPHP4-204ENST00000460696 TXNRD1Q16881 649 aa13.38□□□□□ -0.27
NPHP4-204ENST00000460696 MARCH10Q8NA82 808 aaPredicted RBP13.38□□□□□ -0.27
NPHP4-204ENST00000460696 ZNF274Q96GC6 653 aaPredicted RBP13.38□□□□□ -0.27
NPHP4-204ENST00000460696 ZNF75DP51815 510 aa13.37□□□□□ -0.27
NPHP4-204ENST00000460696 IKQ13123 557 aaPredicted RBP13.37□□□□□ -0.27
NPHP4-204ENST00000460696 RBM26Q5T8P6 1007 aaKnown RBP13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms