RNA–Protein interactions for RNA: ENST00000458268.5

USP39-209, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 751 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-209ENST00000458268 EXOC6BQ9Y2D4 811 aa23.05■■□□□ 1.28
USP39-209ENST00000458268 HSPA1AP0DMV8 641 aaKnown RBP23.04■■□□□ 1.28
USP39-209ENST00000458268 HSPA1BP0DMV9 641 aaKnown RBP23.04■■□□□ 1.28
USP39-209ENST00000458268 ECE1P42892 770 aa23.04■■□□□ 1.28
USP39-209ENST00000458268 TEKT1Q969V4 418 aa23.04■■□□□ 1.28
USP39-209ENST00000458268 SERPINA10Q9UK55 444 aa23.04■■□□□ 1.28
USP39-209ENST00000458268 DENND2AQ9ULE3 1009 aa23.04■■□□□ 1.28
USP39-209ENST00000458268 AOC2O75106 756 aa23.03■■□□□ 1.28
USP39-209ENST00000458268 NF2P35240 595 aa23.03■■□□□ 1.28
USP39-209ENST00000458268 MOB2Q70IA6 237 aa23.03■■□□□ 1.28
USP39-209ENST00000458268 MTMR14Q8NCE2 650 aa23.03■■□□□ 1.28
USP39-209ENST00000458268 ABCF2Q9UG63 623 aa23.03■■□□□ 1.28
USP39-209ENST00000458268 MAST3O60307 1309 aa23.03■■□□□ 1.28
USP39-209ENST00000458268 RASGRF1Q13972 1273 aa23.02■■□□□ 1.28
USP39-209ENST00000458268 TCP10L2B9ZVM9 353 aa23.01■■□□□ 1.27
USP39-209ENST00000458268 LDHBP07195 334 aaKnown RBP23.01■■□□□ 1.27
USP39-209ENST00000458268 PRDX5P30044 214 aa23.01■■□□□ 1.27
USP39-209ENST00000458268 PDE3AQ14432 1141 aa23.01■■□□□ 1.27
USP39-209ENST00000458268 TNNI3KQ59H18 835 aa23.01■■□□□ 1.27
USP39-209ENST00000458268 DEFB129Q9H1M3 183 aa23.01■■□□□ 1.27
USP39-209ENST00000458268 CHMP4BQ9H444 224 aaKnown RBP23.01■■□□□ 1.27
USP39-209ENST00000458268 ZNF70Q9UC06 446 aaPredicted RBP23.01■■□□□ 1.27
USP39-209ENST00000458268 FPGT-TNNI3KV9GXZ4 949 aa23.01■■□□□ 1.27
USP39-209ENST00000458268 PAPPA2Q9BXP8 1791 aa23.01■■□□□ 1.27
USP39-209ENST00000458268 SEMA3EO15041 775 aa23■■□□□ 1.27
USP39-209ENST00000458268 CACNB3P54284 484 aa23■■□□□ 1.27
USP39-209ENST00000458268 DIXDC1Q155Q3 683 aa23■■□□□ 1.27
USP39-209ENST00000458268 TTC39AQ5SRH9 613 aa23■■□□□ 1.27
USP39-209ENST00000458268 ZBTB40Q9NUA8 1239 aa23■■□□□ 1.27
USP39-209ENST00000458268 FZD1Q9UP38 647 aa23■■□□□ 1.27
USP39-209ENST00000458268 UBE2Q2LH0YL09 131 aa22.99■■□□□ 1.27
USP39-209ENST00000458268 ZNF157P51786 506 aaPredicted RBP22.99■■□□□ 1.27
USP39-209ENST00000458268 PI16Q6UXB8 463 aa22.99■■□□□ 1.27
USP39-209ENST00000458268 AIDAQ96BJ3 306 aa22.99■■□□□ 1.27
USP39-209ENST00000458268 DBNDD2Q9BQY9 259 aa22.99■■□□□ 1.27
USP39-209ENST00000458268 CCDC8Q9H0W5 538 aaPredicted RBP22.99■■□□□ 1.27
USP39-209ENST00000458268 TMOD2Q9NZR1 351 aa22.99■■□□□ 1.27
USP39-209ENST00000458268 MYH2Q9UKX2 1941 aa22.98■■□□□ 1.27
USP39-209ENST00000458268 HMMRO75330 724 aa22.98■■□□□ 1.27
USP39-209ENST00000458268 SPDYE2Q495Y8 402 aa22.98■■□□□ 1.27
USP39-209ENST00000458268 RGMBQ6NW40 437 aa22.98■■□□□ 1.27
USP39-209ENST00000458268 DZIP1Q86YF9 867 aaKnown RBP22.98■■□□□ 1.27
USP39-209ENST00000458268 RASA3Q14644 834 aa22.97■■□□□ 1.27
USP39-209ENST00000458268 SNRKQ9NRH2 765 aa22.97■■□□□ 1.27
USP39-209ENST00000458268 NOP58Q9Y2X3 529 aaKnown RBP22.97■■□□□ 1.27
USP39-209ENST00000458268 SUGT1Q9Y2Z0 365 aa22.97■■□□□ 1.27
USP39-209ENST00000458268 RRP1P56182 461 aaKnown RBP22.96■■□□□ 1.27
USP39-209ENST00000458268 HDLBPQ00341 1268 aaKnown RBP22.96■■□□□ 1.27
USP39-209ENST00000458268 TNFAIP1Q13829 316 aa22.96■■□□□ 1.27
USP39-209ENST00000458268 CCDC158Q5M9N0 1113 aa22.96■■□□□ 1.27
USP39-209ENST00000458268 RPAP2Q8IXW5 612 aaPredicted RBP22.96■■□□□ 1.27
USP39-209ENST00000458268 ZGPATQ8N5A5 531 aaKnown RBP22.96■■□□□ 1.27
USP39-209ENST00000458268 IL1RAPL2Q9NP60 686 aa22.96■■□□□ 1.27
USP39-209ENST00000458268 TLR7Q9NYK1 1049 aaKnown RBP22.96■■□□□ 1.27
USP39-209ENST00000458268 HMG20BQ9P0W2 317 aa22.96■■□□□ 1.27
USP39-209ENST00000458268 ANGEL1Q9UNK9 670 aaKnown RBP22.96■■□□□ 1.27
USP39-209ENST00000458268 AK9Q5TCS8 1911 aa22.96■■□□□ 1.27
USP39-209ENST00000458268 TNNI2P48788 182 aa22.95■■□□□ 1.26
USP39-209ENST00000458268 NBPF12Q5TAG4 269 aaPredicted RBP22.95■■□□□ 1.26
USP39-209ENST00000458268 TBC1D9Q6ZT07 1266 aa22.95■■□□□ 1.26
USP39-209ENST00000458268 ERC1Q8IUD2 1116 aa22.95■■□□□ 1.26
USP39-209ENST00000458268 SPATA5Q8NB90 893 aa22.95■■□□□ 1.26
USP39-209ENST00000458268 GPR108Q9NPR9 543 aa22.95■■□□□ 1.26
USP39-209ENST00000458268 UQCRFS1P1P0C7P4 283 aa22.94■■□□□ 1.26
USP39-209ENST00000458268 HSP90AB4PQ58FF6 505 aa22.94■■□□□ 1.26
USP39-209ENST00000458268 ARMC9Q7Z3E5 817 aa22.94■■□□□ 1.26
USP39-209ENST00000458268 AACSQ86V21 672 aa22.94■■□□□ 1.26
USP39-209ENST00000458268 HHIPL1Q96JK4 782 aa22.94■■□□□ 1.26
USP39-209ENST00000458268 ZDHHC15Q96MV8 337 aa22.94■■□□□ 1.26
USP39-209ENST00000458268 BEGAINQ9BUH8 593 aa22.94■■□□□ 1.26
USP39-209ENST00000458268 TMEM39BQ9GZU3 492 aa22.94■■□□□ 1.26
USP39-209ENST00000458268 DAGLAQ9Y4D2 1042 aa22.94■■□□□ 1.26
USP39-209ENST00000458268 PPP2R3BQ9Y5P8 575 aa22.94■■□□□ 1.26
USP39-209ENST00000458268 THSD7BQ9C0I4 1608 aa22.93■■□□□ 1.26
USP39-209ENST00000458268 SALL1Q9NSC2 1324 aa22.93■■□□□ 1.26
USP39-209ENST00000458268 MCAMP43121 646 aa22.93■■□□□ 1.26
USP39-209ENST00000458268 FKBP1BP68106 108 aa22.93■■□□□ 1.26
USP39-209ENST00000458268 MKRN3Q13064 507 aaKnown RBP22.93■■□□□ 1.26
USP39-209ENST00000458268 SPTY2D1Q68D10 685 aaPredicted RBP22.93■■□□□ 1.26
USP39-209ENST00000458268 HHIPL2Q6UWX4 724 aa22.93■■□□□ 1.26
USP39-209ENST00000458268 ERICH6Q7L0X2 663 aa22.93■■□□□ 1.26
USP39-209ENST00000458268 SIRT2Q8IXJ6 389 aa22.93■■□□□ 1.26
USP39-209ENST00000458268 EAF2Q96CJ1 260 aaPredicted RBP22.93■■□□□ 1.26
USP39-209ENST00000458268 ZIC5Q96T25 663 aa22.93■■□□□ 1.26
USP39-209ENST00000458268 RAI14Q9P0K7 980 aa22.93■■□□□ 1.26
USP39-209ENST00000458268 FOXN1O15353 648 aa22.92■■□□□ 1.26
USP39-209ENST00000458268 ARID4AP29374 1257 aaPredicted RBP22.92■■□□□ 1.26
USP39-209ENST00000458268 MAP2K1Q02750 393 aaPredicted RBP22.92■■□□□ 1.26
USP39-209ENST00000458268 SUPT20HL1Q3ZLR7 823 aa22.92■■□□□ 1.26
USP39-209ENST00000458268 APOBEC3HQ6NTF7 200 aaKnown RBP22.92■■□□□ 1.26
USP39-209ENST00000458268 CDAN1Q8IWY9 1227 aa22.92■■□□□ 1.26
USP39-209ENST00000458268 RHPN1Q8TCX5 695 aa22.92■■□□□ 1.26
USP39-209ENST00000458268 DBNLQ9UJU6 430 aaKnown RBP22.92■■□□□ 1.26
USP39-209ENST00000458268 NOGQ13253 232 aa22.91■■□□□ 1.26
USP39-209ENST00000458268 CCDC102AQ96A19 550 aa22.91■■□□□ 1.26
USP39-209ENST00000458268 LRP2BPQ9P2M1 347 aa22.91■■□□□ 1.26
USP39-209ENST00000458268 SSC5DA1L4H1 1573 aa22.91■■□□□ 1.26
USP39-209ENST00000458268 MYO5AQ9Y4I1 1855 aaKnown RBP22.9■■□□□ 1.26
USP39-209ENST00000458268 PPP1R12BO60237 982 aaPredicted RBP22.9■■□□□ 1.26
USP39-209ENST00000458268 RASAL3Q86YV0 1011 aa22.9■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms