RNA–Protein interactions for RNA: ENST00000458046.6

SYNE2-207, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 2,669 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-207ENST00000458046 PROCA1Q8NCQ7 364 aaPredicted RBP13.79□□□□□ -0.2
SYNE2-207ENST00000458046 C1orf131Q8NDD1 294 aaKnown RBP13.79□□□□□ -0.2
SYNE2-207ENST00000458046 RAPGEF4Q8WZA2 1011 aa13.79□□□□□ -0.2
SYNE2-207ENST00000458046 TANGO6Q9C0B7 1094 aa13.79□□□□□ -0.2
SYNE2-207ENST00000458046 USP16Q9Y5T5 823 aa13.79□□□□□ -0.2
SYNE2-207ENST00000458046 NCAPD2Q15021 1401 aa13.79□□□□□ -0.2
SYNE2-207ENST00000458046 LMO7Q8WWI1 1683 aa13.79□□□□□ -0.2
SYNE2-207ENST00000458046 CAPN15O75808 1086 aa13.79□□□□□ -0.2
SYNE2-207ENST00000458046 COPB2P35606 906 aa13.79□□□□□ -0.2
SYNE2-207ENST00000458046 TOB2Q14106 344 aaPredicted RBP13.79□□□□□ -0.2
SYNE2-207ENST00000458046 ZNF496Q96IT1 587 aaPredicted RBP13.79□□□□□ -0.2
SYNE2-207ENST00000458046 JADE2Q9NQC1 790 aa13.79□□□□□ -0.2
SYNE2-207ENST00000458046 CRYBG1Q9Y4K1 1723 aa13.79□□□□□ -0.2
SYNE2-207ENST00000458046 KRT85P78386 507 aa13.78□□□□□ -0.2
SYNE2-207ENST00000458046 TFCP2Q12800 502 aa13.78□□□□□ -0.2
SYNE2-207ENST00000458046 ZNF512BQ96KM6 892 aaPredicted RBP13.78□□□□□ -0.2
SYNE2-207ENST00000458046 INO80BQ9C086 356 aaPredicted RBP13.78□□□□□ -0.2
SYNE2-207ENST00000458046 SLC52A2Q9HAB3 445 aa13.78□□□□□ -0.2
SYNE2-207ENST00000458046 ATP5J2-PTCD1G3V325 749 aa13.78□□□□□ -0.2
SYNE2-207ENST00000458046 KCNQ2O43526 872 aa13.78□□□□□ -0.2
SYNE2-207ENST00000458046 PTCD1O75127 700 aaKnown RBP13.78□□□□□ -0.2
SYNE2-207ENST00000458046 TAF5LO75529 589 aa13.78□□□□□ -0.2
SYNE2-207ENST00000458046 SASS6Q6UVJ0 657 aa13.78□□□□□ -0.2
SYNE2-207ENST00000458046 CCDC129Q6ZRS4 1044 aa13.78□□□□□ -0.2
SYNE2-207ENST00000458046 ANKRD13DQ6ZTN6 518 aa13.78□□□□□ -0.2
SYNE2-207ENST00000458046 DBNLQ9UJU6 430 aaKnown RBP13.78□□□□□ -0.2
SYNE2-207ENST00000458046 HOXD11P31277 338 aaPredicted RBP13.77□□□□□ -0.2
SYNE2-207ENST00000458046 NOLC1Q14978 699 aaKnown RBP eCLIP13.77□□□□□ -0.2
SYNE2-207ENST00000458046 R3HDM1Q15032 1099 aaKnown RBP13.77□□□□□ -0.2
SYNE2-207ENST00000458046 TSNAXIP1Q2TAA8 658 aa13.77□□□□□ -0.2
SYNE2-207ENST00000458046 MSL3Q8N5Y2 521 aaKnown RBP13.77□□□□□ -0.2
SYNE2-207ENST00000458046 SPC24Q8NBT2 197 aa13.77□□□□□ -0.2
SYNE2-207ENST00000458046 SCYL1Q96KG9 808 aa13.77□□□□□ -0.2
SYNE2-207ENST00000458046 SEC62Q99442 399 aaKnown RBP13.77□□□□□ -0.2
SYNE2-207ENST00000458046 METTL22Q9BUU2 404 aaPredicted RBP13.77□□□□□ -0.2
SYNE2-207ENST00000458046 PUF60Q9UHX1 559 aaKnown RBP13.77□□□□□ -0.2
SYNE2-207ENST00000458046 BMS1Q14692 1282 aaKnown RBP13.77□□□□□ -0.21
SYNE2-207ENST00000458046 ANKRD1Q15327 319 aa13.77□□□□□ -0.21
SYNE2-207ENST00000458046 UBE3BQ7Z3V4 1068 aa13.77□□□□□ -0.21
SYNE2-207ENST00000458046 JMYQ8N9B5 988 aa13.77□□□□□ -0.21
SYNE2-207ENST00000458046 ENOX1Q8TC92 643 aaKnown RBP13.77□□□□□ -0.21
SYNE2-207ENST00000458046 CKAP2LQ8IYA6 745 aa13.77□□□□□ -0.21
SYNE2-207ENST00000458046 CEP120Q8N960 986 aa13.77□□□□□ -0.21
SYNE2-207ENST00000458046 PIBF1Q8WXW3 757 aa13.77□□□□□ -0.21
SYNE2-207ENST00000458046 DDX27Q96GQ7 796 aaKnown RBP13.77□□□□□ -0.21
SYNE2-207ENST00000458046 SWAP70Q9UH65 585 aa13.77□□□□□ -0.21
SYNE2-207ENST00000458046 COL4A3BPQ9Y5P4 624 aa13.77□□□□□ -0.21
SYNE2-207ENST00000458046 GLI3P10071 1580 aa13.76□□□□□ -0.21
SYNE2-207ENST00000458046 JAK2O60674 1132 aa13.76□□□□□ -0.21
SYNE2-207ENST00000458046 CCDC192P0DO97 292 aa13.76□□□□□ -0.21
SYNE2-207ENST00000458046 PDCP20941 246 aa13.76□□□□□ -0.21
SYNE2-207ENST00000458046 PTPN12Q05209 780 aaKnown RBP13.76□□□□□ -0.21
SYNE2-207ENST00000458046 NPHP3Q7Z494 1330 aa13.76□□□□□ -0.21
SYNE2-207ENST00000458046 MED23Q9ULK4 1368 aa13.76□□□□□ -0.21
SYNE2-207ENST00000458046 GOLGA6L4A6NEF3 574 aa13.76□□□□□ -0.21
SYNE2-207ENST00000458046 PHKG2P15735 406 aa13.76□□□□□ -0.21
SYNE2-207ENST00000458046 TNNI3KQ59H18 835 aa13.76□□□□□ -0.21
SYNE2-207ENST00000458046 ICE2Q659A1 982 aa13.76□□□□□ -0.21
SYNE2-207ENST00000458046 DDX17Q92841 729 aaKnown RBP13.76□□□□□ -0.21
SYNE2-207ENST00000458046 DDX11Q96FC9 970 aa13.76□□□□□ -0.21
SYNE2-207ENST00000458046 DBNDD2Q9BQY9 259 aa13.76□□□□□ -0.21
SYNE2-207ENST00000458046 LRRC2Q9BYS8 371 aa13.76□□□□□ -0.21
SYNE2-207ENST00000458046 FPGT-TNNI3KV9GXZ4 949 aa13.76□□□□□ -0.21
SYNE2-207ENST00000458046 IRX3P78415 501 aaPredicted RBP13.75□□□□□ -0.21
SYNE2-207ENST00000458046 GJD4Q96KN9 370 aaPredicted RBP13.75□□□□□ -0.21
SYNE2-207ENST00000458046 NUP62CLQ9H1M0 184 aa13.75□□□□□ -0.21
SYNE2-207ENST00000458046 DACT1Q9NYF0 836 aa13.75□□□□□ -0.21
SYNE2-207ENST00000458046 ZRANB2O95218 330 aaKnown RBP eCLIP13.75□□□□□ -0.21
SYNE2-207ENST00000458046 TATP17735 454 aaPredicted RBP13.75□□□□□ -0.21
SYNE2-207ENST00000458046 ATP5JP18859 108 aa13.75□□□□□ -0.21
SYNE2-207ENST00000458046 RFX5P48382 616 aaPredicted RBP13.75□□□□□ -0.21
SYNE2-207ENST00000458046 NBPF9Q3BBW0 867 aa13.75□□□□□ -0.21
SYNE2-207ENST00000458046 COL13A1Q5TAT6 717 aaPredicted RBP13.75□□□□□ -0.21
SYNE2-207ENST00000458046 COPRSQ9NQ92 184 aa13.75□□□□□ -0.21
SYNE2-207ENST00000458046 COL15A1P39059 1388 aa13.75□□□□□ -0.21
SYNE2-207ENST00000458046 OVOS2A0A0G2JMS6 1433 aa13.74□□□□□ -0.21
SYNE2-207ENST00000458046 A0A087WZG4 1122 aa13.74□□□□□ -0.21
SYNE2-207ENST00000458046 MAP3K11Q16584 847 aa13.74□□□□□ -0.21
SYNE2-207ENST00000458046 SLFNL1Q499Z3 407 aa13.74□□□□□ -0.21
SYNE2-207ENST00000458046 TTC5Q8N0Z6 440 aa13.74□□□□□ -0.21
SYNE2-207ENST00000458046 TSC1Q92574 1164 aa13.74□□□□□ -0.21
SYNE2-207ENST00000458046 NEK1Q96PY6 1258 aa13.74□□□□□ -0.21
SYNE2-207ENST00000458046 NUP188Q5SRE5 1749 aa13.74□□□□□ -0.21
SYNE2-207ENST00000458046 Q6ZUG5 572 aa13.74□□□□□ -0.21
SYNE2-207ENST00000458046 LUZP1Q86V48 1076 aa13.74□□□□□ -0.21
SYNE2-207ENST00000458046 CABLES1Q8TDN4 633 aa13.74□□□□□ -0.21
SYNE2-207ENST00000458046 HMG20BQ9P0W2 317 aa13.74□□□□□ -0.21
SYNE2-207ENST00000458046 DYNC1I1O14576 645 aa13.73□□□□□ -0.21
SYNE2-207ENST00000458046 SNRPA1P09661 255 aaKnown RBP13.73□□□□□ -0.21
SYNE2-207ENST00000458046 VAMP1P23763 118 aa13.73□□□□□ -0.21
SYNE2-207ENST00000458046 ZNF513Q8N8E2 541 aaPredicted RBP13.73□□□□□ -0.21
SYNE2-207ENST00000458046 LEO1Q8WVC0 666 aaPredicted RBP13.73□□□□□ -0.21
SYNE2-207ENST00000458046 KDM6AO15550 1401 aaPredicted RBP13.73□□□□□ -0.21
SYNE2-207ENST00000458046 SPDYE2BA6NHP3 402 aa13.73□□□□□ -0.21
SYNE2-207ENST00000458046 SPDYE5A6NIY4 337 aa13.73□□□□□ -0.21
SYNE2-207ENST00000458046 SPDYE6P0CI01 402 aa13.73□□□□□ -0.21
SYNE2-207ENST00000458046 TYRO3Q06418 890 aa13.73□□□□□ -0.21
SYNE2-207ENST00000458046 SPDYE2Q495Y8 402 aa13.73□□□□□ -0.21
SYNE2-207ENST00000458046 PIK3R5Q8WYR1 880 aa13.73□□□□□ -0.21
SYNE2-207ENST00000458046 REPIN1Q9BWE0 567 aaKnown RBP13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms