RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 IGHMBP2P38935 993 aaKnown RBP17.63■□□□□ 0.41
LDLR-202ENST00000455727 RASGRF1Q13972 1273 aa17.63■□□□□ 0.41
LDLR-202ENST00000455727 CLEC4GQ6UXB4 293 aa17.63■□□□□ 0.41
LDLR-202ENST00000455727 ILDR1Q86SU0 546 aaPredicted RBP17.63■□□□□ 0.41
LDLR-202ENST00000455727 USP28Q96RU2 1077 aa17.63■□□□□ 0.41
LDLR-202ENST00000455727 SEC31BQ9NQW1 1179 aa17.63■□□□□ 0.41
LDLR-202ENST00000455727 ZNF652Q9Y2D9 606 aa17.63■□□□□ 0.41
LDLR-202ENST00000455727 CHD4Q14839 1912 aa17.63■□□□□ 0.41
LDLR-202ENST00000455727 PATL2C9JE40 543 aaKnown RBP17.63■□□□□ 0.41
LDLR-202ENST00000455727 CTAGE5O15320 804 aa17.63■□□□□ 0.41
LDLR-202ENST00000455727 APPP05067 770 aa17.63■□□□□ 0.41
LDLR-202ENST00000455727 TBC1D10CQ8IV04 446 aa17.63■□□□□ 0.41
LDLR-202ENST00000455727 FBXO18Q8NFZ0 1043 aa17.63■□□□□ 0.41
LDLR-202ENST00000455727 TMEM87BQ96K49 555 aa17.63■□□□□ 0.41
LDLR-202ENST00000455727 C8orf76Q96K31 380 aa17.62■□□□□ 0.41
LDLR-202ENST00000455727 RTEL1Q9NZ71 1219 aa17.62■□□□□ 0.41
LDLR-202ENST00000455727 CPLX1O14810 134 aa17.61■□□□□ 0.41
LDLR-202ENST00000455727 CKAP2LQ8IYA6 745 aa17.61■□□□□ 0.41
LDLR-202ENST00000455727 ORC3Q9UBD5 711 aaPredicted RBP17.61■□□□□ 0.41
LDLR-202ENST00000455727 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP17.61■□□□□ 0.41
LDLR-202ENST00000455727 SH2B2O14492 632 aaPredicted RBP17.61■□□□□ 0.41
LDLR-202ENST00000455727 RGL2O15211 777 aa17.61■□□□□ 0.41
LDLR-202ENST00000455727 FOSBP53539 338 aa17.61■□□□□ 0.41
LDLR-202ENST00000455727 TERF1P54274 439 aa17.61■□□□□ 0.41
LDLR-202ENST00000455727 CEBPZQ03701 1054 aaKnown RBP17.61■□□□□ 0.41
LDLR-202ENST00000455727 SASS6Q6UVJ0 657 aa17.61■□□□□ 0.41
LDLR-202ENST00000455727 A0A0G2JS52 829 aa17.6■□□□□ 0.41
LDLR-202ENST00000455727 FAM177BA6PVY3 158 aa17.6■□□□□ 0.41
LDLR-202ENST00000455727 GUCY1B3Q02153 619 aa17.6■□□□□ 0.41
LDLR-202ENST00000455727 BRAPQ7Z569 592 aa17.6■□□□□ 0.41
LDLR-202ENST00000455727 CCAR1Q8IX12 1150 aaKnown RBP17.6■□□□□ 0.41
LDLR-202ENST00000455727 MAGEB6Q8N7X4 407 aa17.6■□□□□ 0.41
LDLR-202ENST00000455727 GNAT2P19087 354 aa17.6■□□□□ 0.41
LDLR-202ENST00000455727 CYB5R4Q7L1T6 521 aa17.6■□□□□ 0.41
LDLR-202ENST00000455727 IFNL3Q8IZI9 196 aa17.6■□□□□ 0.41
LDLR-202ENST00000455727 AP5Z1O43299 807 aa17.59■□□□□ 0.41
LDLR-202ENST00000455727 CDKL5O76039 1030 aa17.59■□□□□ 0.41
LDLR-202ENST00000455727 ANO6Q4KMQ2 910 aa17.59■□□□□ 0.41
LDLR-202ENST00000455727 ENGASEQ8NFI3 743 aa17.59■□□□□ 0.41
LDLR-202ENST00000455727 CDC5LQ99459 802 aaKnown RBP17.59■□□□□ 0.41
LDLR-202ENST00000455727 TIAM2Q8IVF5 1701 aa17.59■□□□□ 0.41
LDLR-202ENST00000455727 PNPLA7Q6ZV29 1317 aa17.59■□□□□ 0.41
LDLR-202ENST00000455727 TPM3P06753 285 aa17.59■□□□□ 0.41
LDLR-202ENST00000455727 SNW1Q13573 536 aaKnown RBP17.59■□□□□ 0.41
LDLR-202ENST00000455727 CCDC73Q6ZRK6 1079 aa17.59■□□□□ 0.41
LDLR-202ENST00000455727 SGMS1Q86VZ5 419 aa17.59■□□□□ 0.41
LDLR-202ENST00000455727 IGDCC4Q8TDY8 1250 aa17.59■□□□□ 0.41
LDLR-202ENST00000455727 FTOQ9C0B1 505 aaKnown RBP eCLIP17.59■□□□□ 0.41
LDLR-202ENST00000455727 CBX8Q9HC52 389 aa17.59■□□□□ 0.41
LDLR-202ENST00000455727 POLR3EQ9NVU0 708 aa17.59■□□□□ 0.41
LDLR-202ENST00000455727 BCL9LQ86UU0 1499 aa17.58■□□□□ 0.41
LDLR-202ENST00000455727 MBD4O95243 580 aa17.58■□□□□ 0.41
LDLR-202ENST00000455727 LIFRP42702 1097 aa17.58■□□□□ 0.41
LDLR-202ENST00000455727 FAM160A1Q05DH4 1040 aa17.58■□□□□ 0.41
LDLR-202ENST00000455727 CHRNDQ07001 517 aa17.58■□□□□ 0.41
LDLR-202ENST00000455727 KIAA2012Q0VF49 1180 aa17.58■□□□□ 0.41
LDLR-202ENST00000455727 ADALQ6DHV7 355 aa17.58■□□□□ 0.41
LDLR-202ENST00000455727 NAPBQ9H115 298 aa17.58■□□□□ 0.41
LDLR-202ENST00000455727 CNNM2Q9H8M5 875 aa17.58■□□□□ 0.41
LDLR-202ENST00000455727 A0A1B0GUL6 1792 aa17.58■□□□□ 0.4
LDLR-202ENST00000455727 A0A1W2PQ27 194 aa17.58■□□□□ 0.4
LDLR-202ENST00000455727 A0A1W2PQ64 194 aa17.58■□□□□ 0.4
LDLR-202ENST00000455727 A0A1W2PQD8 194 aa17.58■□□□□ 0.4
LDLR-202ENST00000455727 SNAP23O00161 211 aa17.58■□□□□ 0.4
LDLR-202ENST00000455727 PPFIA3O75145 1194 aa17.58■□□□□ 0.4
LDLR-202ENST00000455727 YEATS4O95619 227 aa17.58■□□□□ 0.4
LDLR-202ENST00000455727 BCAMP50895 628 aa17.58■□□□□ 0.4
LDLR-202ENST00000455727 APOA5Q6Q788 366 aa17.58■□□□□ 0.4
LDLR-202ENST00000455727 EPB41L4AQ9HCS5 686 aaPredicted RBP17.58■□□□□ 0.4
LDLR-202ENST00000455727 DENND2AQ9ULE3 1009 aa17.58■□□□□ 0.4
LDLR-202ENST00000455727 GSG1L2A8MUP6 293 aa17.57■□□□□ 0.4
LDLR-202ENST00000455727 B4E1Z4 1266 aa17.57■□□□□ 0.4
LDLR-202ENST00000455727 ME1P48163 572 aa17.57■□□□□ 0.4
LDLR-202ENST00000455727 METAP2P50579 478 aaKnown RBP eCLIP17.57■□□□□ 0.45e-7■□□□□ 8.9
LDLR-202ENST00000455727 SF3B3Q15393 1217 aaKnown RBP17.57■□□□□ 0.4
LDLR-202ENST00000455727 CPLX2Q6PUV4 134 aaKnown RBP17.57■□□□□ 0.4
LDLR-202ENST00000455727 LINC00301Q8NCQ3 95 aa17.57■□□□□ 0.4
LDLR-202ENST00000455727 TDRD7Q8NHU6 1098 aaKnown RBP17.57■□□□□ 0.4
LDLR-202ENST00000455727 NUTM2BA6NNL0 878 aaPredicted RBP17.56■□□□□ 0.4
LDLR-202ENST00000455727 NUTM2EB1AL46 878 aaPredicted RBP17.56■□□□□ 0.4
LDLR-202ENST00000455727 TPM2P07951 284 aa17.56■□□□□ 0.4
LDLR-202ENST00000455727 LUZP1Q86V48 1076 aa17.56■□□□□ 0.4
LDLR-202ENST00000455727 NUTM2AQ8IVF1 878 aaPredicted RBP17.56■□□□□ 0.4
LDLR-202ENST00000455727 KCNG4Q8TDN1 519 aa17.56■□□□□ 0.4
LDLR-202ENST00000455727 KRT23Q9C075 422 aa17.56■□□□□ 0.4
LDLR-202ENST00000455727 GOLPH3LQ9H4A5 285 aa17.56■□□□□ 0.4
LDLR-202ENST00000455727 NEDD4P46934 1319 aa17.56■□□□□ 0.4
LDLR-202ENST00000455727 CASZ1Q86V15 1759 aa17.56■□□□□ 0.4
LDLR-202ENST00000455727 KCNQ2O43526 872 aa17.56■□□□□ 0.4
LDLR-202ENST00000455727 PLCB2Q00722 1185 aa17.56■□□□□ 0.4
LDLR-202ENST00000455727 NKX2-3Q8TAU0 364 aa17.56■□□□□ 0.4
LDLR-202ENST00000455727 MTA3Q9BTC8 594 aa17.56■□□□□ 0.4
LDLR-202ENST00000455727 NACAP1Q9BZK3 213 aa17.56■□□□□ 0.4
LDLR-202ENST00000455727 ARMT1Q9H993 441 aa17.56■□□□□ 0.4
LDLR-202ENST00000455727 LY9Q9HBG7 655 aa17.56■□□□□ 0.4
LDLR-202ENST00000455727 PCDHA7Q9UN72 937 aa17.56■□□□□ 0.4
LDLR-202ENST00000455727 ZNF804BA4D1E1 1349 aa17.56■□□□□ 0.4
LDLR-202ENST00000455727 GOLGA6L6A8MZA4 724 aa17.55■□□□□ 0.4
LDLR-202ENST00000455727 KINO60870 393 aaKnown RBP17.55■□□□□ 0.4
LDLR-202ENST00000455727 ZNF165P49910 485 aa17.55■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms