RNA–Protein interactions for RNA: ENST00000454468.5

SMPD4-213, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 1 (best)

Gene SMPD4, Length 3,586 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-213ENST00000454468 TPD52L1Q16890 204 aaPredicted RBP13.92□□□□□ -0.18
SMPD4-213ENST00000454468 LPIN2Q92539 896 aa13.92□□□□□ -0.18
SMPD4-213ENST00000454468 KCNJ14Q9UNX9 436 aa13.92□□□□□ -0.18
SMPD4-213ENST00000454468 CAMTA1Q9Y6Y1 1673 aa13.92□□□□□ -0.18
SMPD4-213ENST00000454468 UBE2Q2LH0YL09 131 aa13.92□□□□□ -0.18
SMPD4-213ENST00000454468 OFD1O75665 1012 aa13.92□□□□□ -0.18
SMPD4-213ENST00000454468 RASGRF1Q13972 1273 aa13.92□□□□□ -0.18
SMPD4-213ENST00000454468 MEX3CQ5U5Q3 659 aaKnown RBP13.92□□□□□ -0.18
SMPD4-213ENST00000454468 RASSF8Q8NHQ8 419 aa13.92□□□□□ -0.18
SMPD4-213ENST00000454468 MRVI1Q9Y6F6 885 aa13.92□□□□□ -0.18
SMPD4-213ENST00000454468 CTDNEP1O95476 244 aa13.91□□□□□ -0.18
SMPD4-213ENST00000454468 UQCRFS1P1P0C7P4 283 aa13.91□□□□□ -0.18
SMPD4-213ENST00000454468 PTPN21Q16825 1174 aa13.91□□□□□ -0.18
SMPD4-213ENST00000454468 ANKRD18AQ8IVF6 992 aa13.91□□□□□ -0.18
SMPD4-213ENST00000454468 CYP2D7A0A087X1C5 515 aa13.91□□□□□ -0.18
SMPD4-213ENST00000454468 SPTLC2O15270 562 aa13.91□□□□□ -0.18
SMPD4-213ENST00000454468 UVSSAQ2YD98 709 aa13.91□□□□□ -0.18
SMPD4-213ENST00000454468 USPL1Q5W0Q7 1092 aa13.91□□□□□ -0.18
SMPD4-213ENST00000454468 TBC1D10CQ8IV04 446 aa13.91□□□□□ -0.18
SMPD4-213ENST00000454468 TRIM22Q8IYM9 498 aa13.91□□□□□ -0.18
SMPD4-213ENST00000454468 GPR108Q9NPR9 543 aa13.91□□□□□ -0.18
SMPD4-213ENST00000454468 GNL3LQ9NVN8 582 aaKnown RBP13.91□□□□□ -0.18
SMPD4-213ENST00000454468 ANGEL1Q9UNK9 670 aaKnown RBP13.91□□□□□ -0.18
SMPD4-213ENST00000454468 RIPOR2Q9Y4F9 1068 aa13.91□□□□□ -0.18
SMPD4-213ENST00000454468 CAVIN4Q5BKX8 364 aa13.91□□□□□ -0.18
SMPD4-213ENST00000454468 NBPF5PQ86XG9 351 aaPredicted RBP13.91□□□□□ -0.18
SMPD4-213ENST00000454468 CEP57L1Q8IYX8 460 aa13.91□□□□□ -0.18
SMPD4-213ENST00000454468 DNAJC5Q9H3Z4 198 aa13.91□□□□□ -0.18
SMPD4-213ENST00000454468 CLSTN2Q9H4D0 955 aa13.91□□□□□ -0.18
SMPD4-213ENST00000454468 ZPR1O75312 459 aa13.9□□□□□ -0.18
SMPD4-213ENST00000454468 MRPS27Q92552 414 aaKnown RBP13.9□□□□□ -0.18
SMPD4-213ENST00000454468 ANKIB1Q9P2G1 1089 aa13.9□□□□□ -0.18
SMPD4-213ENST00000454468 ADD2P35612 726 aa13.9□□□□□ -0.18
SMPD4-213ENST00000454468 ZNF652Q9Y2D9 606 aa13.9□□□□□ -0.18
SMPD4-213ENST00000454468 SLC3A2P08195 630 aaKnown RBP13.89□□□□□ -0.19
SMPD4-213ENST00000454468 WTAPQ15007 396 aa13.89□□□□□ -0.19
SMPD4-213ENST00000454468 CYB5R4Q7L1T6 521 aa13.89□□□□□ -0.19
SMPD4-213ENST00000454468 PCDHA7Q9UN72 937 aa13.89□□□□□ -0.19
SMPD4-213ENST00000454468 CACNA1FO60840 1977 aa13.89□□□□□ -0.19
SMPD4-213ENST00000454468 TULP1O00294 542 aaPredicted RBP13.89□□□□□ -0.19
SMPD4-213ENST00000454468 CDK11BP21127 795 aaKnown RBP13.89□□□□□ -0.19
SMPD4-213ENST00000454468 LMOD1P29536 600 aaPredicted RBP13.89□□□□□ -0.19
SMPD4-213ENST00000454468 CHRNDQ07001 517 aa13.89□□□□□ -0.19
SMPD4-213ENST00000454468 SSRP1Q08945 709 aaKnown RBP13.89□□□□□ -0.19
SMPD4-213ENST00000454468 IFNL3Q8IZI9 196 aa13.89□□□□□ -0.19
SMPD4-213ENST00000454468 TMEM87AQ8NBN3 555 aa13.89□□□□□ -0.19
SMPD4-213ENST00000454468 UBN2Q6ZU65 1347 aa13.89□□□□□ -0.19
SMPD4-213ENST00000454468 GNPATO15228 680 aa13.89□□□□□ -0.19
SMPD4-213ENST00000454468 LCORLQ8N3X6 602 aa13.89□□□□□ -0.19
SMPD4-213ENST00000454468 KCNB2Q92953 911 aa13.89□□□□□ -0.19
SMPD4-213ENST00000454468 PDLIM2Q96JY6 352 aa13.89□□□□□ -0.19
SMPD4-213ENST00000454468 CLIC6Q96NY7 704 aa13.89□□□□□ -0.19
SMPD4-213ENST00000454468 CDC5LQ99459 802 aaKnown RBP13.89□□□□□ -0.19
SMPD4-213ENST00000454468 SRP68Q9UHB9 627 aaKnown RBP13.89□□□□□ -0.19
SMPD4-213ENST00000454468 PYCARDQ9ULZ3 195 aa13.89□□□□□ -0.19
SMPD4-213ENST00000454468 CARMIL3Q8ND23 1372 aa13.89□□□□□ -0.19
SMPD4-213ENST00000454468 KDM4FA0A1W2PPD8 638 aa13.88□□□□□ -0.19
SMPD4-213ENST00000454468 CDKL5O76039 1030 aa13.88□□□□□ -0.19
SMPD4-213ENST00000454468 TPM4P67936 248 aa13.88□□□□□ -0.19
SMPD4-213ENST00000454468 C11orf57Q6ZUT1 292 aaPredicted RBP13.88□□□□□ -0.19
SMPD4-213ENST00000454468 FAM177A1Q8N128 213 aaPredicted RBP13.88□□□□□ -0.19
SMPD4-213ENST00000454468 IL6STP40189 918 aaPredicted RBP13.88□□□□□ -0.19
SMPD4-213ENST00000454468 ERFEQ4G0M1 354 aa13.88□□□□□ -0.19
SMPD4-213ENST00000454468 LLPHQ9BRT6 129 aaKnown RBP13.88□□□□□ -0.19
SMPD4-213ENST00000454468 GOLPH3LQ9H4A5 285 aa13.88□□□□□ -0.19
SMPD4-213ENST00000454468 CPDO75976 1380 aa13.88□□□□□ -0.19
SMPD4-213ENST00000454468 SLIT3O75094 1523 aa13.88□□□□□ -0.19
SMPD4-213ENST00000454468 AP5Z1O43299 807 aa13.88□□□□□ -0.19
SMPD4-213ENST00000454468 NDUFA8P51970 172 aa13.88□□□□□ -0.19
SMPD4-213ENST00000454468 NKX1-1Q15270 411 aaPredicted RBP13.88□□□□□ -0.19
SMPD4-213ENST00000454468 KRT40Q6A162 431 aa13.88□□□□□ -0.19
SMPD4-213ENST00000454468 ZNF274Q96GC6 653 aaPredicted RBP13.88□□□□□ -0.19
SMPD4-213ENST00000454468 NAT10Q9H0A0 1025 aaKnown RBP13.88□□□□□ -0.19
SMPD4-213ENST00000454468 COL5A2P05997 1499 aaPredicted RBP13.88□□□□□ -0.19
SMPD4-213ENST00000454468 UBAP1LF5GYI3 381 aa13.87□□□□□ -0.19
SMPD4-213ENST00000454468 PES1O00541 588 aaKnown RBP13.87□□□□□ -0.19
SMPD4-213ENST00000454468 EXOSC10Q01780 885 aaKnown RBP13.87□□□□□ -0.19
SMPD4-213ENST00000454468 STX1AQ16623 288 aa13.87□□□□□ -0.19
SMPD4-213ENST00000454468 KLHL10Q6JEL2 608 aa13.87□□□□□ -0.19
SMPD4-213ENST00000454468 ANO10Q9NW15 660 aa13.87□□□□□ -0.19
SMPD4-213ENST00000454468 ZSWIM5Q9P217 1185 aa13.87□□□□□ -0.19
SMPD4-213ENST00000454468 SERPINC1P01008 464 aa13.87□□□□□ -0.19
SMPD4-213ENST00000454468 DYNLL1P63167 89 aaKnown RBP13.87□□□□□ -0.19
SMPD4-213ENST00000454468 TPM2P07951 284 aa13.87□□□□□ -0.19
SMPD4-213ENST00000454468 ITPK1Q13572 414 aa13.87□□□□□ -0.19
SMPD4-213ENST00000454468 TSGA10IPQ3SY00 556 aa13.87□□□□□ -0.19
SMPD4-213ENST00000454468 NAA16Q6N069 864 aaPredicted RBP13.87□□□□□ -0.19
SMPD4-213ENST00000454468 FAM160A1Q05DH4 1040 aa13.86□□□□□ -0.19
SMPD4-213ENST00000454468 RTN1Q16799 776 aa13.86□□□□□ -0.19
SMPD4-213ENST00000454468 MYSM1Q5VVJ2 828 aa13.86□□□□□ -0.19
SMPD4-213ENST00000454468 BBXQ8WY36 941 aaPredicted RBP13.86□□□□□ -0.19
SMPD4-213ENST00000454468 SETDB2Q96T68 719 aa13.86□□□□□ -0.19
SMPD4-213ENST00000454468 AATFQ9NY61 560 aaKnown RBP eCLIP13.86□□□□□ -0.19
SMPD4-213ENST00000454468 MAGEB6P1A0A0J9YX57 407 aa13.86□□□□□ -0.19
SMPD4-213ENST00000454468 SMIM22K7EJ46 135 aa13.86□□□□□ -0.19
SMPD4-213ENST00000454468 CSF1RP07333 972 aa13.86□□□□□ -0.19
SMPD4-213ENST00000454468 FDPSP14324 419 aaKnown RBP13.86□□□□□ -0.19
SMPD4-213ENST00000454468 SYKP43405 635 aa13.86□□□□□ -0.19
SMPD4-213ENST00000454468 ARID5BQ14865 1188 aa13.86□□□□□ -0.19
SMPD4-213ENST00000454468 MARCH10Q8NA82 808 aaPredicted RBP13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms