RNA–Protein interactions for RNA: ENST00000449684.6

LIMS1-210, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 492 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-210ENST00000449684 G3BP1Q13283 466 aaKnown RBP eCLIP19.22■□□□□ 0.67
LIMS1-210ENST00000449684 SUPT20HL1Q3ZLR7 823 aa19.22■□□□□ 0.67
LIMS1-210ENST00000449684 TEKT1Q969V4 418 aa19.22■□□□□ 0.67
LIMS1-210ENST00000449684 TDRD3Q9H7E2 651 aaKnown RBP19.22■□□□□ 0.67
LIMS1-210ENST00000449684 ANGEL1Q9UNK9 670 aaKnown RBP19.22■□□□□ 0.67
LIMS1-210ENST00000449684 FAM155AB1AL88 458 aaPredicted RBP19.21■□□□□ 0.67
LIMS1-210ENST00000449684 PPP1R12BO60237 982 aaPredicted RBP19.21■□□□□ 0.67
LIMS1-210ENST00000449684 TNNI2P48788 182 aa19.21■□□□□ 0.67
LIMS1-210ENST00000449684 HDLBPQ00341 1268 aaKnown RBP19.21■□□□□ 0.67
LIMS1-210ENST00000449684 ZIC5Q96T25 663 aa19.21■□□□□ 0.67
LIMS1-210ENST00000449684 ZBTB4Q9P1Z0 1013 aaPredicted RBP19.21■□□□□ 0.67
LIMS1-210ENST00000449684 ZNF70Q9UC06 446 aaPredicted RBP19.21■□□□□ 0.67
LIMS1-210ENST00000449684 TSKSQ9UJT2 592 aa19.21■□□□□ 0.67
LIMS1-210ENST00000449684 SUGT1Q9Y2Z0 365 aa19.21■□□□□ 0.67
LIMS1-210ENST00000449684 TFCP2Q12800 502 aa19.2■□□□□ 0.66
LIMS1-210ENST00000449684 RASAL3Q86YV0 1011 aa19.2■□□□□ 0.66
LIMS1-210ENST00000449684 NEUROD6Q96NK8 337 aa19.2■□□□□ 0.66
LIMS1-210ENST00000449684 TMOD2Q9NZR1 351 aa19.2■□□□□ 0.66
LIMS1-210ENST00000449684 DENND2AQ9ULE3 1009 aa19.2■□□□□ 0.66
LIMS1-210ENST00000449684 ECM29Q5VYK3 1845 aa19.19■□□□□ 0.66
LIMS1-210ENST00000449684 MS4A1P11836 297 aa19.19■□□□□ 0.66
LIMS1-210ENST00000449684 TIMM10P62072 90 aa19.19■□□□□ 0.66
LIMS1-210ENST00000449684 OS9Q13438 667 aaPredicted RBP19.19■□□□□ 0.66
LIMS1-210ENST00000449684 RASA3Q14644 834 aa19.19■□□□□ 0.66
LIMS1-210ENST00000449684 GRIK5Q16478 980 aa19.19■□□□□ 0.66
LIMS1-210ENST00000449684 SPDYE2Q495Y8 402 aa19.19■□□□□ 0.66
LIMS1-210ENST00000449684 GORABQ5T7V8 394 aa19.19■□□□□ 0.66
LIMS1-210ENST00000449684 REM2Q8IYK8 340 aaPredicted RBP19.19■□□□□ 0.66
LIMS1-210ENST00000449684 ARAP2Q8WZ64 1704 aa19.18■□□□□ 0.66
LIMS1-210ENST00000449684 PNMA6EA0A0J9YXQ4 647 aa19.18■□□□□ 0.66
LIMS1-210ENST00000449684 A0A1B0GUL7 405 aa19.18■□□□□ 0.66
LIMS1-210ENST00000449684 TCP10L2B9ZVM9 353 aa19.18■□□□□ 0.66
LIMS1-210ENST00000449684 SEMA3EO15041 775 aa19.18■□□□□ 0.66
LIMS1-210ENST00000449684 PHKA1P46020 1223 aa19.18■□□□□ 0.66
LIMS1-210ENST00000449684 LDHBP07195 334 aaKnown RBP19.17■□□□□ 0.66
LIMS1-210ENST00000449684 ADORA1P30542 326 aa19.17■□□□□ 0.66
LIMS1-210ENST00000449684 MVPQ14764 893 aaKnown RBP19.17■□□□□ 0.66
LIMS1-210ENST00000449684 NBPF12Q5TAG4 269 aaPredicted RBP19.17■□□□□ 0.66
LIMS1-210ENST00000449684 CCDC102BQ68D86 513 aa19.17■□□□□ 0.66
LIMS1-210ENST00000449684 MRIQ9BWK5 157 aa19.17■□□□□ 0.66
LIMS1-210ENST00000449684 C1orf115Q9H7X2 142 aa19.17■□□□□ 0.66
LIMS1-210ENST00000449684 AOX1Q06278 1338 aa19.17■□□□□ 0.66
LIMS1-210ENST00000449684 MYH13Q9UKX3 1938 aa19.17■□□□□ 0.66
LIMS1-210ENST00000449684 CAPN15O75808 1086 aa19.16■□□□□ 0.66
LIMS1-210ENST00000449684 IREB2P48200 963 aaKnown RBP19.16■□□□□ 0.66
LIMS1-210ENST00000449684 ZGPATQ8N5A5 531 aaKnown RBP19.16■□□□□ 0.66
LIMS1-210ENST00000449684 XAGE2Q96GT9 111 aa19.16■□□□□ 0.66
LIMS1-210ENST00000449684 ZDHHC15Q96MV8 337 aa19.16■□□□□ 0.66
LIMS1-210ENST00000449684 RLBP1P12271 317 aa19.15■□□□□ 0.66
LIMS1-210ENST00000449684 ATP8B2P98198 1209 aa19.15■□□□□ 0.66
LIMS1-210ENST00000449684 MKRN3Q13064 507 aaKnown RBP19.15■□□□□ 0.66
LIMS1-210ENST00000449684 HHIPL2Q6UWX4 724 aa19.15■□□□□ 0.66
LIMS1-210ENST00000449684 SLC10A4Q96EP9 437 aa19.15■□□□□ 0.66
LIMS1-210ENST00000449684 CSRNP1Q96S65 589 aa19.15■□□□□ 0.66
LIMS1-210ENST00000449684 FZD1Q9UP38 647 aa19.15■□□□□ 0.66
LIMS1-210ENST00000449684 ZBTB7BO15156 539 aaPredicted RBP19.14■□□□□ 0.65
LIMS1-210ENST00000449684 TRPA1O75762 1119 aa19.14■□□□□ 0.65
LIMS1-210ENST00000449684 PANK1Q8TE04 598 aa19.14■□□□□ 0.65
LIMS1-210ENST00000449684 ABCF2Q9UG63 623 aa19.14■□□□□ 0.65
LIMS1-210ENST00000449684 SURF6O75683 361 aaKnown RBP19.13■□□□□ 0.65
LIMS1-210ENST00000449684 PRDX5P30044 214 aa19.13■□□□□ 0.65
LIMS1-210ENST00000449684 CACNB3P54284 484 aa19.13■□□□□ 0.65
LIMS1-210ENST00000449684 LDLRAD1Q5T700 205 aa19.13■□□□□ 0.65
LIMS1-210ENST00000449684 TMEM39BQ9GZU3 492 aa19.13■□□□□ 0.65
LIMS1-210ENST00000449684 RNF186Q9NXI6 227 aa19.13■□□□□ 0.65
LIMS1-210ENST00000449684 SAGE1Q9NXZ1 904 aa19.13■□□□□ 0.65
LIMS1-210ENST00000449684 SALL1Q9NSC2 1324 aa19.12■□□□□ 0.65
LIMS1-210ENST00000449684 SREBF2Q12772 1141 aa19.12■□□□□ 0.65
LIMS1-210ENST00000449684 RASGRF1Q13972 1273 aa19.12■□□□□ 0.65
LIMS1-210ENST00000449684 MAP3K11Q16584 847 aa19.12■□□□□ 0.65
LIMS1-210ENST00000449684 SPTY2D1Q68D10 685 aaPredicted RBP19.12■□□□□ 0.65
LIMS1-210ENST00000449684 APOBEC3HQ6NTF7 200 aaKnown RBP19.12■□□□□ 0.65
LIMS1-210ENST00000449684 DZIP1Q86YF9 867 aaKnown RBP19.12■□□□□ 0.65
LIMS1-210ENST00000449684 SSH3Q8TE77 659 aa19.12■□□□□ 0.65
LIMS1-210ENST00000449684 RCAN3Q9UKA8 241 aa19.12■□□□□ 0.65
LIMS1-210ENST00000449684 UNCXA6NJT0 531 aa19.11■□□□□ 0.65
LIMS1-210ENST00000449684 POLA2Q14181 598 aa19.11■□□□□ 0.65
LIMS1-210ENST00000449684 DIXDC1Q155Q3 683 aa19.11■□□□□ 0.65
LIMS1-210ENST00000449684 SLF2Q8IX21 1173 aa19.11■□□□□ 0.65
LIMS1-210ENST00000449684 ANKRD13AQ8IZ07 590 aa19.11■□□□□ 0.65
LIMS1-210ENST00000449684 HOOK2Q96ED9 719 aa19.11■□□□□ 0.65
LIMS1-210ENST00000449684 AKAP11Q9UKA4 1901 aa19.11■□□□□ 0.65
LIMS1-210ENST00000449684 USP2O75604 605 aaPredicted RBP19.1■□□□□ 0.65
LIMS1-210ENST00000449684 SPRYD7Q5W111 196 aa19.1■□□□□ 0.65
LIMS1-210ENST00000449684 FKBP1CQ5VVH2 108 aa19.09■□□□□ 0.65
LIMS1-210ENST00000449684 ERICH6Q7L0X2 663 aa19.09■□□□□ 0.65
LIMS1-210ENST00000449684 FAM83AQ86UY5 434 aa19.09■□□□□ 0.65
LIMS1-210ENST00000449684 CLMNQ96JQ2 1002 aa19.09■□□□□ 0.65
LIMS1-210ENST00000449684 CHMP4BQ9H444 224 aaKnown RBP19.09■□□□□ 0.65
LIMS1-210ENST00000449684 USP40Q9NVE5 1235 aa19.09■□□□□ 0.65
LIMS1-210ENST00000449684 DAGLAQ9Y4D2 1042 aa19.09■□□□□ 0.65
LIMS1-210ENST00000449684 SSC5DA1L4H1 1573 aa19.09■□□□□ 0.65
LIMS1-210ENST00000449684 PDS5AQ29RF7 1337 aaKnown RBP19.08■□□□□ 0.65
LIMS1-210ENST00000449684 ZBTB22O15209 634 aa19.08■□□□□ 0.64
LIMS1-210ENST00000449684 UQCRFS1P1P0C7P4 283 aa19.08■□□□□ 0.64
LIMS1-210ENST00000449684 CCDC158Q5M9N0 1113 aa19.08■□□□□ 0.64
LIMS1-210ENST00000449684 TTC39AQ5SRH9 613 aa19.08■□□□□ 0.64
LIMS1-210ENST00000449684 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.08■□□□□ 0.64
LIMS1-210ENST00000449684 TEPSINQ96N21 525 aa19.08■□□□□ 0.64
LIMS1-210ENST00000449684 DDX19BQ9UMR2 479 aa19.08■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms