RNA–Protein interactions for RNA: ENST00000441602.5

VPS50-205, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,474 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-205ENST00000441602 UFL1O94874 794 aa7.1□□□□□ -1.27
VPS50-205ENST00000441602 DCAF8Q5TAQ9 597 aa7.1□□□□□ -1.27
VPS50-205ENST00000441602 BRF1Q92994 677 aa7.1□□□□□ -1.27
VPS50-205ENST00000441602 EYA3Q99504 573 aa7.1□□□□□ -1.27
VPS50-205ENST00000441602 UBR3Q6ZT12 1888 aa7.1□□□□□ -1.27
VPS50-205ENST00000441602 PPEF1O14829 653 aaPredicted RBP7.1□□□□□ -1.27
VPS50-205ENST00000441602 PRC1O43663 620 aa7.1□□□□□ -1.27
VPS50-205ENST00000441602 STX6O43752 255 aa7.1□□□□□ -1.27
VPS50-205ENST00000441602 MBD3O95983 291 aa7.1□□□□□ -1.27
VPS50-205ENST00000441602 GJB2P29033 226 aa7.1□□□□□ -1.27
VPS50-205ENST00000441602 GIMAP6Q6P9H5 292 aa7.1□□□□□ -1.27
VPS50-205ENST00000441602 TBC1D22AQ8WUA7 517 aa7.1□□□□□ -1.27
VPS50-205ENST00000441602 ZNF274Q96GC6 653 aaPredicted RBP7.1□□□□□ -1.27
VPS50-205ENST00000441602 TMEM87BQ96K49 555 aa7.1□□□□□ -1.27
VPS50-205ENST00000441602 ARMT1Q9H993 441 aa7.1□□□□□ -1.27
VPS50-205ENST00000441602 IQSEC3Q9UPP2 1182 aaPredicted RBP7.1□□□□□ -1.27
VPS50-205ENST00000441602 TCRBV5S4A2TA0A5A2 114 aa7.1□□□□□ -1.27
VPS50-205ENST00000441602 CDKL5O76039 1030 aa7.1□□□□□ -1.27
VPS50-205ENST00000441602 BAG3O95817 575 aa7.1□□□□□ -1.27
VPS50-205ENST00000441602 ZSCAN22P10073 491 aaPredicted RBP7.1□□□□□ -1.27
VPS50-205ENST00000441602 PCP11498 1178 aaKnown RBP7.1□□□□□ -1.27
VPS50-205ENST00000441602 HAND2P61296 217 aa7.1□□□□□ -1.27
VPS50-205ENST00000441602 GSE1Q14687 1217 aa7.1□□□□□ -1.27
VPS50-205ENST00000441602 MCTP1Q6DN14 999 aa7.1□□□□□ -1.27
VPS50-205ENST00000441602 SP8Q8IXZ3 490 aa7.1□□□□□ -1.27
VPS50-205ENST00000441602 IFNL3Q8IZI9 196 aa7.1□□□□□ -1.27
VPS50-205ENST00000441602 SYAP1Q96A49 352 aaPredicted RBP7.1□□□□□ -1.27
VPS50-205ENST00000441602 MTA3Q9BTC8 594 aa7.1□□□□□ -1.27
VPS50-205ENST00000441602 NSFL1CQ9UNZ2 370 aaKnown RBP7.1□□□□□ -1.27
VPS50-205ENST00000441602 DUOX1Q9NRD9 1551 aa7.1□□□□□ -1.27
VPS50-205ENST00000441602 C6orf229H3BNL8 230 aa7.09□□□□□ -1.27
VPS50-205ENST00000441602 H3BQV1 296 aa7.09□□□□□ -1.27
VPS50-205ENST00000441602 SNAP23O00161 211 aa7.09□□□□□ -1.27
VPS50-205ENST00000441602 CPLX1O14810 134 aa7.09□□□□□ -1.27
VPS50-205ENST00000441602 PFKFB2O60825 505 aa7.09□□□□□ -1.27
VPS50-205ENST00000441602 LDHBP07195 334 aaKnown RBP7.09□□□□□ -1.27
VPS50-205ENST00000441602 DDR1Q08345 913 aa7.09□□□□□ -1.27
VPS50-205ENST00000441602 ME3Q16798 604 aa7.09□□□□□ -1.27
VPS50-205ENST00000441602 L1TD1Q5T7N2 865 aaKnown RBP7.09□□□□□ -1.27
VPS50-205ENST00000441602 IFFO2Q5TF58 517 aa7.09□□□□□ -1.27
VPS50-205ENST00000441602 LARP1BQ659C4 914 aaKnown RBP7.09□□□□□ -1.27
VPS50-205ENST00000441602 MFSD6Q6ZSS7 791 aa7.09□□□□□ -1.27
VPS50-205ENST00000441602 COL23A1Q86Y22 540 aaPredicted RBP7.09□□□□□ -1.27
VPS50-205ENST00000441602 GTF3C6Q969F1 213 aa7.09□□□□□ -1.27
VPS50-205ENST00000441602 TOMM22Q9NS69 142 aa7.09□□□□□ -1.27
VPS50-205ENST00000441602 TPCN1Q9ULQ1 816 aa7.09□□□□□ -1.27
VPS50-205ENST00000441602 ISY1Q9ULR0 285 aaKnown RBP7.09□□□□□ -1.27
VPS50-205ENST00000441602 MYH7P12883 1935 aa7.09□□□□□ -1.27
VPS50-205ENST00000441602 VPS37CA5D8V6 355 aaPredicted RBP7.09□□□□□ -1.27
VPS50-205ENST00000441602 PLCG2P16885 1265 aa7.09□□□□□ -1.27
VPS50-205ENST00000441602 EXOSC10Q01780 885 aaKnown RBP7.09□□□□□ -1.27
VPS50-205ENST00000441602 TOB2Q14106 344 aaPredicted RBP7.09□□□□□ -1.27
VPS50-205ENST00000441602 TTLL5Q6EMB2 1281 aa7.09□□□□□ -1.27
VPS50-205ENST00000441602 NFXL1Q6ZNB6 911 aa7.09□□□□□ -1.27
VPS50-205ENST00000441602 AMIGO3Q86WK7 504 aa7.09□□□□□ -1.27
VPS50-205ENST00000441602 FBXL16Q8N461 479 aa7.09□□□□□ -1.27
VPS50-205ENST00000441602 MASTLQ96GX5 879 aa7.09□□□□□ -1.27
VPS50-205ENST00000441602 SALL1Q9NSC2 1324 aa7.09□□□□□ -1.28
VPS50-205ENST00000441602 KLRG2A4D1S0 409 aaPredicted RBP7.08□□□□□ -1.28
VPS50-205ENST00000441602 MMP10P09238 476 aa7.08□□□□□ -1.28
VPS50-205ENST00000441602 ZNF827Q17R98 1081 aa7.08□□□□□ -1.28
VPS50-205ENST00000441602 PROM2Q8N271 834 aa7.08□□□□□ -1.28
VPS50-205ENST00000441602 TMTC2Q8N394 836 aa7.08□□□□□ -1.28
VPS50-205ENST00000441602 NECAB1Q8N987 351 aa7.08□□□□□ -1.28
VPS50-205ENST00000441602 TCEANC2Q96MN5 208 aa7.08□□□□□ -1.28
VPS50-205ENST00000441602 PODXL2Q9NZ53 605 aa7.08□□□□□ -1.28
VPS50-205ENST00000441602 DDX49Q9Y6V7 483 aaKnown RBP7.08□□□□□ -1.28
VPS50-205ENST00000441602 STK3Q13188 491 aa7.08□□□□□ -1.28
VPS50-205ENST00000441602 SLFNL1Q499Z3 407 aa7.08□□□□□ -1.28
VPS50-205ENST00000441602 AKNAD1Q5T1N1 836 aa7.08□□□□□ -1.28
VPS50-205ENST00000441602 STOX1Q6ZVD7 989 aa7.08□□□□□ -1.28
VPS50-205ENST00000441602 AKAP11Q9UKA4 1901 aa7.08□□□□□ -1.28
VPS50-205ENST00000441602 H0YIN7 160 aa7.08□□□□□ -1.28
VPS50-205ENST00000441602 CHGBP05060 677 aa7.08□□□□□ -1.28
VPS50-205ENST00000441602 GPSM2P81274 684 aa7.08□□□□□ -1.28
VPS50-205ENST00000441602 FOXD4L5Q5VV16 416 aaPredicted RBP7.08□□□□□ -1.28
VPS50-205ENST00000441602 CC2D2BQ6DHV5 1058 aa7.08□□□□□ -1.28
VPS50-205ENST00000441602 MB21D2Q8IYB1 491 aaPredicted RBP7.08□□□□□ -1.28
VPS50-205ENST00000441602 TDRD7Q8NHU6 1098 aaKnown RBP7.08□□□□□ -1.28
VPS50-205ENST00000441602 FOXD4L4Q8WXT5 416 aaPredicted RBP7.08□□□□□ -1.28
VPS50-205ENST00000441602 ESR2Q92731 530 aa7.08□□□□□ -1.28
VPS50-205ENST00000441602 CNKSR1Q969H4 720 aa7.08□□□□□ -1.28
VPS50-205ENST00000441602 AGXT2Q9BYV1 514 aa7.08□□□□□ -1.28
VPS50-205ENST00000441602 ATP8A2Q9NTI2 1148 aa7.08□□□□□ -1.28
VPS50-205ENST00000441602 ATP6V0A2Q9Y487 856 aa7.08□□□□□ -1.28
VPS50-205ENST00000441602 RGPD3A6NKT7 1758 aaPredicted RBP7.08□□□□□ -1.28
VPS50-205ENST00000441602 RGPD4Q7Z3J3 1758 aa7.08□□□□□ -1.28
VPS50-205ENST00000441602 KLF18A0A0U1RQI7 1052 aa7.07□□□□□ -1.28
VPS50-205ENST00000441602 CCDC69A6NI79 296 aa7.07□□□□□ -1.28
VPS50-205ENST00000441602 GOLGA8BA8MQT2 603 aa7.07□□□□□ -1.28
VPS50-205ENST00000441602 F13A1P00488 732 aa7.07□□□□□ -1.28
VPS50-205ENST00000441602 SYT1P21579 422 aa7.07□□□□□ -1.28
VPS50-205ENST00000441602 DEKP35659 375 aaKnown RBP7.07□□□□□ -1.28
VPS50-205ENST00000441602 SLC15A2Q16348 729 aa7.07□□□□□ -1.28
VPS50-205ENST00000441602 CCDC178Q5BJE1 867 aa7.07□□□□□ -1.28
VPS50-205ENST00000441602 STYK1Q6J9G0 422 aa7.07□□□□□ -1.28
VPS50-205ENST00000441602 LCORLQ8N3X6 602 aa7.07□□□□□ -1.28
VPS50-205ENST00000441602 MPNDQ8N594 471 aa7.07□□□□□ -1.28
VPS50-205ENST00000441602 MIGA1Q8NAN2 632 aa7.07□□□□□ -1.28
VPS50-205ENST00000441602 LARP6Q9BRS8 491 aaKnown RBP7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms