RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 GIGYF2Q6Y7W6 1299 aaKnown RBP19.43■□□□□ 0.7
PTPRF-209ENST00000438120 PLCD3Q8N3E9 789 aa19.43■□□□□ 0.7
PTPRF-209ENST00000438120 GJA3Q9Y6H8 435 aa19.43■□□□□ 0.7
PTPRF-209ENST00000438120 ATP10BO94823 1461 aa19.43■□□□□ 0.7
PTPRF-209ENST00000438120 GNA11P29992 359 aa19.43■□□□□ 0.7
PTPRF-209ENST00000438120 KIF5AQ12840 1032 aa19.43■□□□□ 0.7
PTPRF-209ENST00000438120 NDUFB9Q9Y6M9 179 aa19.43■□□□□ 0.7
PTPRF-209ENST00000438120 SMIM23A6NLE4 172 aa19.42■□□□□ 0.7
PTPRF-209ENST00000438120 TEX11Q8IYF3 940 aa19.42■□□□□ 0.7
PTPRF-209ENST00000438120 CTAGE9A4FU28 777 aa19.42■□□□□ 0.7
PTPRF-209ENST00000438120 UFL1O94874 794 aa19.42■□□□□ 0.7
PTPRF-209ENST00000438120 CHMP2AO43633 222 aa19.42■□□□□ 0.7
PTPRF-209ENST00000438120 FERP16591 822 aa19.42■□□□□ 0.7
PTPRF-209ENST00000438120 RAPGEF1Q13905 1077 aa19.42■□□□□ 0.7
PTPRF-209ENST00000438120 PRDM1O75626 825 aa19.42■□□□□ 0.7
PTPRF-209ENST00000438120 GRIPAP1Q4V328 841 aa19.42■□□□□ 0.7
PTPRF-209ENST00000438120 IQCGQ9H095 443 aaKnown RBP19.42■□□□□ 0.7
PTPRF-209ENST00000438120 HARSP12081 509 aaKnown RBP19.42■□□□□ 0.7
PTPRF-209ENST00000438120 HS2ST1Q7LGA3 356 aa19.42■□□□□ 0.7
PTPRF-209ENST00000438120 IP6K1Q92551 441 aa19.42■□□□□ 0.7
PTPRF-209ENST00000438120 USP26Q9BXU7 913 aa19.42■□□□□ 0.7
PTPRF-209ENST00000438120 PRIMPOLQ96LW4 560 aa19.41■□□□□ 0.7
PTPRF-209ENST00000438120 UIMC1Q96RL1 719 aa19.41■□□□□ 0.7
PTPRF-209ENST00000438120 TRAPPC8Q9Y2L5 1435 aa19.41■□□□□ 0.7
PTPRF-209ENST00000438120 TAF5LO75529 589 aa19.41■□□□□ 0.7
PTPRF-209ENST00000438120 ZYXQ15942 572 aaKnown RBP19.41■□□□□ 0.7
PTPRF-209ENST00000438120 FCHSD1Q86WN1 690 aa19.41■□□□□ 0.7
PTPRF-209ENST00000438120 RBM17Q96I25 401 aaKnown RBP19.41■□□□□ 0.7
PTPRF-209ENST00000438120 PUS7Q96PZ0 661 aaKnown RBP19.41■□□□□ 0.7
PTPRF-209ENST00000438120 PPP1R9BQ96SB3 815 aa19.41■□□□□ 0.7
PTPRF-209ENST00000438120 DBNDD2Q9BQY9 259 aa19.41■□□□□ 0.7
PTPRF-209ENST00000438120 ZHX1Q9UKY1 873 aaPredicted RBP19.41■□□□□ 0.7
PTPRF-209ENST00000438120 POLD1P28340 1107 aa19.41■□□□□ 0.7
PTPRF-209ENST00000438120 RASAL2Q9UJF2 1139 aa19.41■□□□□ 0.7
PTPRF-209ENST00000438120 EYA3Q99504 573 aa19.4■□□□□ 0.7
PTPRF-209ENST00000438120 DDX21Q9NR30 783 aaKnown RBP eCLIP19.4■□□□□ 0.7
PTPRF-209ENST00000438120 BICDL2A1A5D9 508 aa19.4■□□□□ 0.7
PTPRF-209ENST00000438120 CCT6AP40227 531 aaKnown RBP19.4■□□□□ 0.7
PTPRF-209ENST00000438120 CNBD1Q8NA66 436 aa19.4■□□□□ 0.7
PTPRF-209ENST00000438120 ARFGAP3Q9NP61 516 aa19.4■□□□□ 0.7
PTPRF-209ENST00000438120 SSX2IPQ9Y2D8 614 aa19.4■□□□□ 0.7
PTPRF-209ENST00000438120 ZNF569Q5MCW4 686 aa19.4■□□□□ 0.7
PTPRF-209ENST00000438120 NCOA5Q9HCD5 579 aaKnown RBP19.4■□□□□ 0.7
PTPRF-209ENST00000438120 CALCOCO1Q9P1Z2 691 aa19.4■□□□□ 0.7
PTPRF-209ENST00000438120 ZNF790Q6PG37 636 aa19.4■□□□□ 0.7
PTPRF-209ENST00000438120 KRT83P78385 493 aa19.4■□□□□ 0.7
PTPRF-209ENST00000438120 RAPGEF6Q8TEU7 1601 aa19.39■□□□□ 0.7
PTPRF-209ENST00000438120 TESK2Q96S53 571 aa19.39■□□□□ 0.7
PTPRF-209ENST00000438120 LGR6Q9HBX8 967 aa19.39■□□□□ 0.7
PTPRF-209ENST00000438120 KRT86O43790 486 aa19.39■□□□□ 0.69
PTPRF-209ENST00000438120 DENND2AQ9ULE3 1009 aa19.39■□□□□ 0.69
PTPRF-209ENST00000438120 TNNI3KQ59H18 835 aa19.39■□□□□ 0.69
PTPRF-209ENST00000438120 FPGT-TNNI3KV9GXZ4 949 aa19.39■□□□□ 0.69
PTPRF-209ENST00000438120 MRPS9P82933 396 aaKnown RBP19.39■□□□□ 0.69
PTPRF-209ENST00000438120 BRAPQ7Z569 592 aa19.39■□□□□ 0.69
PTPRF-209ENST00000438120 CCDC63Q8NA47 563 aa19.39■□□□□ 0.69
PTPRF-209ENST00000438120 IFT81Q8WYA0 676 aa19.39■□□□□ 0.69
PTPRF-209ENST00000438120 HELLSQ9NRZ9 838 aa19.39■□□□□ 0.69
PTPRF-209ENST00000438120 DYNC1I1O14576 645 aa19.38■□□□□ 0.69
PTPRF-209ENST00000438120 IQUBQ8NA54 791 aa19.38■□□□□ 0.69
PTPRF-209ENST00000438120 XAGE2Q96GT9 111 aa19.38■□□□□ 0.69
PTPRF-209ENST00000438120 CCNL1Q9UK58 526 aaPredicted RBP19.38■□□□□ 0.69
PTPRF-209ENST00000438120 CTNND2Q9UQB3 1225 aa19.38■□□□□ 0.69
PTPRF-209ENST00000438120 MAPK8IP1Q9UQF2 711 aa19.38■□□□□ 0.69
PTPRF-209ENST00000438120 ZBTB7BO15156 539 aaPredicted RBP19.38■□□□□ 0.69
PTPRF-209ENST00000438120 RHOXF2BP0C7M4 288 aa19.38■□□□□ 0.69
PTPRF-209ENST00000438120 NCBP1Q09161 790 aaKnown RBP19.38■□□□□ 0.69
PTPRF-209ENST00000438120 PIK3AP1Q6ZUJ8 805 aa19.38■□□□□ 0.69
PTPRF-209ENST00000438120 RHOXF2Q9BQY4 288 aa19.38■□□□□ 0.69
PTPRF-209ENST00000438120 EYA2O00167 538 aa19.38■□□□□ 0.69
PTPRF-209ENST00000438120 A1BGP04217 495 aa19.38■□□□□ 0.69
PTPRF-209ENST00000438120 MXRA7P84157 204 aa19.38■□□□□ 0.69
PTPRF-209ENST00000438120 TTC6Q86TZ1 520 aa19.38■□□□□ 0.69
PTPRF-209ENST00000438120 ATRIPQ8WXE1 791 aa19.38■□□□□ 0.69
PTPRF-209ENST00000438120 SYT10Q6XYQ8 523 aa19.38■□□□□ 0.69
PTPRF-209ENST00000438120 FAM227BQ96M60 508 aa19.38■□□□□ 0.69
PTPRF-209ENST00000438120 SELENOSQ9BQE4 189 aa19.38■□□□□ 0.69
PTPRF-209ENST00000438120 RBM28Q9NW13 759 aaKnown RBP19.38■□□□□ 0.69
PTPRF-209ENST00000438120 HIBADHP31937 336 aaKnown RBP19.37■□□□□ 0.69
PTPRF-209ENST00000438120 OTUD7BQ6GQQ9 843 aa19.37■□□□□ 0.69
PTPRF-209ENST00000438120 PLBD2Q8NHP8 589 aa19.37■□□□□ 0.69
PTPRF-209ENST00000438120 FBF1Q8TES7 1133 aa19.37■□□□□ 0.69
PTPRF-209ENST00000438120 CCDC25Q86WR0 208 aa19.37■□□□□ 0.69
PTPRF-209ENST00000438120 RPS6KB1P23443 525 aa19.37■□□□□ 0.69
PTPRF-209ENST00000438120 LMBR1Q8WVP7 490 aa19.37■□□□□ 0.69
PTPRF-209ENST00000438120 DDX17Q92841 729 aaKnown RBP19.37■□□□□ 0.69
PTPRF-209ENST00000438120 ORAI2Q96SN7 254 aa19.37■□□□□ 0.69
PTPRF-209ENST00000438120 MYL10Q9BUA6 226 aa19.37■□□□□ 0.69
PTPRF-209ENST00000438120 SLC27A2O14975 620 aa19.36■□□□□ 0.69
PTPRF-209ENST00000438120 PRPHP41219 470 aa19.36■□□□□ 0.69
PTPRF-209ENST00000438120 DNAJC21Q5F1R6 531 aaKnown RBP19.36■□□□□ 0.69
PTPRF-209ENST00000438120 FAM173BQ6P4H8 233 aa19.36■□□□□ 0.69
PTPRF-209ENST00000438120 SMC5Q8IY18 1101 aa19.36■□□□□ 0.69
PTPRF-209ENST00000438120 IPO4Q8TEX9 1081 aaKnown RBP19.36■□□□□ 0.69
PTPRF-209ENST00000438120 AATFQ9NY61 560 aaKnown RBP eCLIP19.36■□□□□ 0.69
PTPRF-209ENST00000438120 METTL22Q9BUU2 404 aaPredicted RBP19.36■□□□□ 0.69
PTPRF-209ENST00000438120 V9GY48 417 aaPredicted RBP19.36■□□□□ 0.69
PTPRF-209ENST00000438120 SV2BQ7L1I2 683 aa19.36■□□□□ 0.69
PTPRF-209ENST00000438120 TRAF5O00463 557 aa19.36■□□□□ 0.69
PTPRF-209ENST00000438120 KIF4AO95239 1232 aa19.36■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms