RNA–Protein interactions for RNA: ENST00000437564.5

MCF2-205, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MCF2, Length 1,988 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-205ENST00000437564 CAPS2Q9BXY5 557 aa7.41□□□□□ -1.22
MCF2-205ENST00000437564 TRMT1Q9NXH9 659 aaKnown RBP7.41□□□□□ -1.22
MCF2-205ENST00000437564 MAP3K20Q9NYL2 800 aaKnown RBP7.41□□□□□ -1.22
MCF2-205ENST00000437564 DDX25Q9UHL0 483 aaKnown RBP7.41□□□□□ -1.22
MCF2-205ENST00000437564 TMCC3Q9ULS5 477 aa7.41□□□□□ -1.22
MCF2-205ENST00000437564 COG6Q9Y2V7 657 aa7.41□□□□□ -1.22
MCF2-205ENST00000437564 TMED5Q9Y3A6 229 aa7.41□□□□□ -1.22
MCF2-205ENST00000437564 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP7.41□□□□□ -1.22
MCF2-205ENST00000437564 SLC30A1Q9Y6M5 507 aa7.41□□□□□ -1.22
MCF2-205ENST00000437564 MAP3K5Q99683 1374 aa7.4□□□□□ -1.22
MCF2-205ENST00000437564 CCDC171Q6TFL3 1326 aa7.4□□□□□ -1.22
MCF2-205ENST00000437564 TBKBP1A7MCY6 615 aa7.4□□□□□ -1.22
MCF2-205ENST00000437564 PRPF40AO75400 957 aaKnown RBP7.4□□□□□ -1.22
MCF2-205ENST00000437564 SEC24BO95487 1268 aa7.4□□□□□ -1.22
MCF2-205ENST00000437564 RPSAP08865 295 aaKnown RBP7.4□□□□□ -1.22
MCF2-205ENST00000437564 LMNB1P20700 586 aa7.4□□□□□ -1.22
MCF2-205ENST00000437564 CUL3Q13618 768 aa7.4□□□□□ -1.22
MCF2-205ENST00000437564 ARHGEF6Q15052 776 aa7.4□□□□□ -1.22
MCF2-205ENST00000437564 NAA16Q6N069 864 aaPredicted RBP7.4□□□□□ -1.22
MCF2-205ENST00000437564 TLDC1Q6P9B6 456 aa7.4□□□□□ -1.22
MCF2-205ENST00000437564 RPAP2Q8IXW5 612 aaPredicted RBP7.4□□□□□ -1.22
MCF2-205ENST00000437564 DRC7Q8IY82 874 aa7.4□□□□□ -1.22
MCF2-205ENST00000437564 CEP57L1Q8IYX8 460 aa7.4□□□□□ -1.22
MCF2-205ENST00000437564 LMBR1Q8WVP7 490 aa7.4□□□□□ -1.22
MCF2-205ENST00000437564 SPIRE2Q8WWL2 714 aa7.4□□□□□ -1.22
MCF2-205ENST00000437564 RTF1Q92541 710 aaKnown RBP7.4□□□□□ -1.22
MCF2-205ENST00000437564 HOOK2Q96ED9 719 aa7.4□□□□□ -1.22
MCF2-205ENST00000437564 VMP1Q96GC9 406 aa7.4□□□□□ -1.22
MCF2-205ENST00000437564 OSBPL10Q9BXB5 764 aa7.4□□□□□ -1.22
MCF2-205ENST00000437564 VCX3BQ9H321 246 aa7.4□□□□□ -1.22
MCF2-205ENST00000437564 LMBRD1Q9NUN5 540 aa7.4□□□□□ -1.22
MCF2-205ENST00000437564 ZNHIT6Q9NWK9 470 aaKnown RBP7.4□□□□□ -1.22
MCF2-205ENST00000437564 DKK3Q9UBP4 350 aa7.4□□□□□ -1.22
MCF2-205ENST00000437564 DIS3Q9Y2L1 958 aaKnown RBP7.4□□□□□ -1.22
MCF2-205ENST00000437564 PCDHGC5Q9Y5F6 944 aa7.4□□□□□ -1.22
MCF2-205ENST00000437564 SETD5Q9C0A6 1442 aa7.4□□□□□ -1.22
MCF2-205ENST00000437564 INSRP06213 1382 aa7.4□□□□□ -1.22
MCF2-205ENST00000437564 BOLA2-SMG1P6H3BVE0 249 aa7.4□□□□□ -1.23
MCF2-205ENST00000437564 TSPY4P0CV99 314 aa7.4□□□□□ -1.23
MCF2-205ENST00000437564 TSPY10P0CW01 314 aa7.4□□□□□ -1.23
MCF2-205ENST00000437564 CLK1P49759 484 aaKnown RBP7.4□□□□□ -1.23
MCF2-205ENST00000437564 MAP3K9P80192 1104 aa7.4□□□□□ -1.23
MCF2-205ENST00000437564 WASHC5Q12768 1159 aa7.4□□□□□ -1.23
MCF2-205ENST00000437564 NAA25Q14CX7 972 aa7.4□□□□□ -1.23
MCF2-205ENST00000437564 ELF2Q15723 593 aa7.4□□□□□ -1.23
MCF2-205ENST00000437564 RC3H1Q5TC82 1133 aaKnown RBP7.4□□□□□ -1.23
MCF2-205ENST00000437564 CAPRIN2Q6IMN6 1127 aaKnown RBP7.4□□□□□ -1.23
MCF2-205ENST00000437564 SKAP1Q86WV1 359 aa7.4□□□□□ -1.23
MCF2-205ENST00000437564 CEP57Q86XR8 500 aa7.4□□□□□ -1.23
MCF2-205ENST00000437564 CEP112Q8N8E3 955 aa7.4□□□□□ -1.23
MCF2-205ENST00000437564 SERBP1Q8NC51 408 aaKnown RBP eCLIP7.4□□□□□ -1.23
MCF2-205ENST00000437564 WHAMMQ8TF30 809 aa7.4□□□□□ -1.23
MCF2-205ENST00000437564 TEKT4Q8WW24 435 aa7.4□□□□□ -1.23
MCF2-205ENST00000437564 PARD6BQ9BYG5 372 aa7.4□□□□□ -1.23
MCF2-205ENST00000437564 SLC7A5P2Q9GIP4 190 aa7.4□□□□□ -1.23
MCF2-205ENST00000437564 TAOK3Q9H2K8 898 aa7.4□□□□□ -1.23
MCF2-205ENST00000437564 PAIP2BQ9ULR5 123 aaKnown RBP7.4□□□□□ -1.23
MCF2-205ENST00000437564 CORO1CQ9ULV4 474 aaPredicted RBP7.4□□□□□ -1.23
MCF2-205ENST00000437564 MAPK8IP1Q9UQF2 711 aa7.4□□□□□ -1.23
MCF2-205ENST00000437564 EIF4G1Q04637 1599 aaKnown RBP7.39□□□□□ -1.23
MCF2-205ENST00000437564 VPS8Q8N3P4 1428 aa7.39□□□□□ -1.23
MCF2-205ENST00000437564 MTUS2Q5JR59 1369 aa7.39□□□□□ -1.23
MCF2-205ENST00000437564 PIK3R4Q99570 1358 aa7.39□□□□□ -1.23
MCF2-205ENST00000437564 EVI5O60447 810 aa7.39□□□□□ -1.23
MCF2-205ENST00000437564 GIGYF1O75420 1035 aaPredicted RBP7.39□□□□□ -1.23
MCF2-205ENST00000437564 RNF8O76064 485 aa7.39□□□□□ -1.23
MCF2-205ENST00000437564 FECHP22830 423 aa7.39□□□□□ -1.23
MCF2-205ENST00000437564 SLC8A1P32418 973 aa7.39□□□□□ -1.23
MCF2-205ENST00000437564 CCT8P50990 548 aa7.39□□□□□ -1.23
MCF2-205ENST00000437564 ARPC4P59998 168 aa7.39□□□□□ -1.23
MCF2-205ENST00000437564 KCNB1Q14721 858 aa7.39□□□□□ -1.23
MCF2-205ENST00000437564 COBLL1Q53SF7 1204 aa7.39□□□□□ -1.23
MCF2-205ENST00000437564 EMC10Q5UCC4 262 aa7.39□□□□□ -1.23
MCF2-205ENST00000437564 TTLL7Q6ZT98 887 aa7.39□□□□□ -1.23
MCF2-205ENST00000437564 TMC6Q7Z403 805 aa7.39□□□□□ -1.23
MCF2-205ENST00000437564 FAM200AQ8TCP9 573 aa7.39□□□□□ -1.23
MCF2-205ENST00000437564 PPP2R3CQ969Q6 453 aa7.39□□□□□ -1.23
MCF2-205ENST00000437564 LRRC45Q96CN5 670 aa7.39□□□□□ -1.23
MCF2-205ENST00000437564 TCHPQ9BT92 498 aa7.39□□□□□ -1.23
MCF2-205ENST00000437564 CCDC68Q9H2F9 335 aa7.39□□□□□ -1.23
MCF2-205ENST00000437564 PCDH18Q9HCL0 1135 aa7.39□□□□□ -1.23
MCF2-205ENST00000437564 TUBGCP4Q9UGJ1 667 aa7.39□□□□□ -1.23
MCF2-205ENST00000437564 PCSK1NQ9UHG2 260 aa7.39□□□□□ -1.23
MCF2-205ENST00000437564 ZNF215Q9UL58 517 aaPredicted RBP7.39□□□□□ -1.23
MCF2-205ENST00000437564 MAFFQ9ULX9 164 aa7.39□□□□□ -1.23
MCF2-205ENST00000437564 TTLL3Q9Y4R7 772 aa7.39□□□□□ -1.23
MCF2-205ENST00000437564 NUTM2FA1L443 756 aa7.39□□□□□ -1.23
MCF2-205ENST00000437564 GOLGA6L4A6NEF3 574 aa7.39□□□□□ -1.23
MCF2-205ENST00000437564 M0R2C6 588 aa7.39□□□□□ -1.23
MCF2-205ENST00000437564 TBCAO75347 108 aaKnown RBP7.39□□□□□ -1.23
MCF2-205ENST00000437564 STAM2O75886 525 aa7.39□□□□□ -1.23
MCF2-205ENST00000437564 ADCY5O95622 1261 aa7.39□□□□□ -1.23
MCF2-205ENST00000437564 CAVIN2O95810 425 aa7.39□□□□□ -1.23
MCF2-205ENST00000437564 INPP5BP32019 993 aa7.39□□□□□ -1.23
MCF2-205ENST00000437564 NUCB1Q02818 461 aa7.39□□□□□ -1.23
MCF2-205ENST00000437564 MYBPC3Q14896 1274 aa7.39□□□□□ -1.23
MCF2-205ENST00000437564 WTAPQ15007 396 aa7.39□□□□□ -1.23
MCF2-205ENST00000437564 ENOX2Q16206 610 aaKnown RBP7.39□□□□□ -1.23
MCF2-205ENST00000437564 TSR1Q2NL82 804 aaKnown RBP7.39□□□□□ -1.23
MCF2-205ENST00000437564 PLEKHO1Q53GL0 409 aaPredicted RBP7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms