RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 CNNM1Q9NRU3 951 aa8.06□□□□□ -1.12
VPS53-204ENST00000437048 RTL1A6NKG5 1358 aa8.06□□□□□ -1.12
VPS53-204ENST00000437048 GCKP35557 465 aa8.06□□□□□ -1.12
VPS53-204ENST00000437048 TRIM58Q8NG06 486 aa8.06□□□□□ -1.12
VPS53-204ENST00000437048 KIF2CQ99661 725 aa8.06□□□□□ -1.12
VPS53-204ENST00000437048 LCMT1Q9UIC8 334 aa8.06□□□□□ -1.12
VPS53-204ENST00000437048 AKR1B15C9JRZ8 316 aaPredicted RBP8.06□□□□□ -1.12
VPS53-204ENST00000437048 TBCAO75347 108 aaKnown RBP8.06□□□□□ -1.12
VPS53-204ENST00000437048 F13A1P00488 732 aa8.06□□□□□ -1.12
VPS53-204ENST00000437048 NOP2P46087 812 aaKnown RBP8.06□□□□□ -1.12
VPS53-204ENST00000437048 DRP2Q13474 957 aa8.06□□□□□ -1.12
VPS53-204ENST00000437048 SIL1Q9H173 461 aa8.06□□□□□ -1.12
VPS53-204ENST00000437048 PPARDQ03181 441 aa8.05□□□□□ -1.12
VPS53-204ENST00000437048 KRT13P13646 458 aa8.05□□□□□ -1.12
VPS53-204ENST00000437048 KLHL14Q9P2G3 628 aa8.05□□□□□ -1.12
VPS53-204ENST00000437048 ABCD1P33897 745 aa8.05□□□□□ -1.12
VPS53-204ENST00000437048 C8orf74Q6P047 294 aa8.05□□□□□ -1.12
VPS53-204ENST00000437048 CTTNBP2NLQ9P2B4 639 aa8.05□□□□□ -1.12
VPS53-204ENST00000437048 ZNF76P36508 570 aa8.05□□□□□ -1.12
VPS53-204ENST00000437048 ARHGAP4P98171 946 aa8.05□□□□□ -1.12
VPS53-204ENST00000437048 TTC22Q5TAA0 569 aa8.05□□□□□ -1.12
VPS53-204ENST00000437048 TMCO5AQ8N6Q1 288 aa8.05□□□□□ -1.12
VPS53-204ENST00000437048 PPIP5K1Q6PFW1 1433 aa8.05□□□□□ -1.12
VPS53-204ENST00000437048 THAP12O43422 761 aa8.05□□□□□ -1.12
VPS53-204ENST00000437048 HSPA6P17066 643 aa8.05□□□□□ -1.12
VPS53-204ENST00000437048 KRBA2Q6ZNG9 492 aa8.05□□□□□ -1.12
VPS53-204ENST00000437048 NOX5Q96PH1 765 aa8.05□□□□□ -1.12
VPS53-204ENST00000437048 CDC25BP30305 580 aa8.05□□□□□ -1.12
VPS53-204ENST00000437048 VPS52Q8N1B4 723 aa8.05□□□□□ -1.12
VPS53-204ENST00000437048 SPECC1L-ADORA2AF8WAN1 911 aa8.05□□□□□ -1.12
VPS53-204ENST00000437048 MRFAP1L1Q96HT8 127 aa8.05□□□□□ -1.12
VPS53-204ENST00000437048 TRIM4Q9C037 500 aa8.05□□□□□ -1.12
VPS53-204ENST00000437048 UQCRFS1P1P0C7P4 283 aa8.05□□□□□ -1.12
VPS53-204ENST00000437048 SEL1L2Q5TEA6 688 aa8.05□□□□□ -1.12
VPS53-204ENST00000437048 MOV10L1Q9BXT6 1211 aaKnown RBP8.05□□□□□ -1.12
VPS53-204ENST00000437048 RASEFQ8IZ41 740 aa8.05□□□□□ -1.12
VPS53-204ENST00000437048 NEK11Q8NG66 645 aa8.05□□□□□ -1.12
VPS53-204ENST00000437048 PPP1R9BQ96SB3 815 aa8.05□□□□□ -1.12
VPS53-204ENST00000437048 ZNF213O14771 459 aa8.05□□□□□ -1.12
VPS53-204ENST00000437048 KIRREL3Q8IZU9 778 aa8.05□□□□□ -1.12
VPS53-204ENST00000437048 WHAMMQ8TF30 809 aa8.05□□□□□ -1.12
VPS53-204ENST00000437048 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP8.04□□□□□ -1.121e-7■■■■□ 26.6
VPS53-204ENST00000437048 ANGPTL3Q9Y5C1 460 aa8.04□□□□□ -1.12
VPS53-204ENST00000437048 SYNJ1O43426 1573 aa8.04□□□□□ -1.12
VPS53-204ENST00000437048 ANO6Q4KMQ2 910 aa8.04□□□□□ -1.12
VPS53-204ENST00000437048 CENPKQ9BS16 269 aa8.04□□□□□ -1.12
VPS53-204ENST00000437048 ALDH1L1O75891 902 aa8.04□□□□□ -1.12
VPS53-204ENST00000437048 TROVE2P10155 538 aaKnown RBP eCLIP8.04□□□□□ -1.12
VPS53-204ENST00000437048 PLCD1P51178 756 aa8.04□□□□□ -1.12
VPS53-204ENST00000437048 EVA1CP58658 441 aa8.04□□□□□ -1.12
VPS53-204ENST00000437048 CFAP43Q8NDM7 1665 aa8.04□□□□□ -1.12
VPS53-204ENST00000437048 HCLS1P14317 486 aaPredicted RBP8.04□□□□□ -1.12
VPS53-204ENST00000437048 EIF3BP55884 814 aaKnown RBP8.04□□□□□ -1.12
VPS53-204ENST00000437048 STK10O94804 968 aaKnown RBP8.04□□□□□ -1.12
VPS53-204ENST00000437048 IFIT1P09914 478 aaKnown RBP8.04□□□□□ -1.12
VPS53-204ENST00000437048 HS2ST1Q7LGA3 356 aa8.04□□□□□ -1.12
VPS53-204ENST00000437048 TXLNGQ9NUQ3 528 aa8.04□□□□□ -1.12
VPS53-204ENST00000437048 EPS15L1Q9UBC2 864 aa8.04□□□□□ -1.12
VPS53-204ENST00000437048 FOXP2O15409 715 aa8.04□□□□□ -1.12
VPS53-204ENST00000437048 PRPF6O94906 941 aaKnown RBP8.04□□□□□ -1.12
VPS53-204ENST00000437048 GNA11P29992 359 aa8.04□□□□□ -1.12
VPS53-204ENST00000437048 PHBP35232 272 aa8.04□□□□□ -1.12
VPS53-204ENST00000437048 KIFC3Q9BVG8 833 aa8.04□□□□□ -1.12
VPS53-204ENST00000437048 NAIPQ13075 1403 aa8.04□□□□□ -1.12
VPS53-204ENST00000437048 TATP17735 454 aaPredicted RBP8.04□□□□□ -1.12
VPS53-204ENST00000437048 TPD52P55327 224 aaPredicted RBP8.04□□□□□ -1.12
VPS53-204ENST00000437048 C20orf194Q5TEA3 1177 aa8.04□□□□□ -1.12
VPS53-204ENST00000437048 GRK7Q8WTQ7 553 aa8.04□□□□□ -1.12
VPS53-204ENST00000437048 BICD1Q96G01 975 aa8.04□□□□□ -1.12
VPS53-204ENST00000437048 GSTO1P78417 241 aa8.04□□□□□ -1.12
VPS53-204ENST00000437048 SNCBQ16143 134 aa8.04□□□□□ -1.12
VPS53-204ENST00000437048 ANKRD20A3Q5VUR7 823 aa8.04□□□□□ -1.12
VPS53-204ENST00000437048 TMOD2Q9NZR1 351 aa8.04□□□□□ -1.12
VPS53-204ENST00000437048 GOLGA8BA8MQT2 603 aa8.04□□□□□ -1.12
VPS53-204ENST00000437048 IGHMBP2P38935 993 aaKnown RBP8.04□□□□□ -1.12
VPS53-204ENST00000437048 ST5P78524 1137 aa8.04□□□□□ -1.12
VPS53-204ENST00000437048 DDX27Q96GQ7 796 aaKnown RBP8.04□□□□□ -1.12
VPS53-204ENST00000437048 IQGAP2Q13576 1575 aa8.04□□□□□ -1.12
VPS53-204ENST00000437048 SDCCAG8Q86SQ7 713 aaPredicted RBP8.03□□□□□ -1.12
VPS53-204ENST00000437048 LARP6Q9BRS8 491 aaKnown RBP8.03□□□□□ -1.12
VPS53-204ENST00000437048 ODF2LQ9ULJ1 636 aa8.03□□□□□ -1.12
VPS53-204ENST00000437048 TCP1P17987 556 aaKnown RBP8.03□□□□□ -1.12
VPS53-204ENST00000437048 IRX1P78414 480 aaPredicted RBP8.03□□□□□ -1.12
VPS53-204ENST00000437048 EFHD1Q9BUP0 239 aa8.03□□□□□ -1.12
VPS53-204ENST00000437048 UBE4BO95155 1302 aa8.03□□□□□ -1.12
VPS53-204ENST00000437048 STX10O60499 249 aa8.03□□□□□ -1.12
VPS53-204ENST00000437048 RFC1P35251 1148 aaPredicted RBP8.03□□□□□ -1.12
VPS53-204ENST00000437048 TBC1D9Q6ZT07 1266 aa8.03□□□□□ -1.12
VPS53-204ENST00000437048 MRPL40Q9NQ50 206 aaKnown RBP8.03□□□□□ -1.12
VPS53-204ENST00000437048 KIF11P52732 1056 aa8.03□□□□□ -1.12
VPS53-204ENST00000437048 LRRC23Q53EV4 343 aaPredicted RBP8.03□□□□□ -1.12
VPS53-204ENST00000437048 ZC4H2Q9NQZ6 224 aa8.03□□□□□ -1.12
VPS53-204ENST00000437048 DBF4Q9UBU7 674 aaPredicted RBP8.03□□□□□ -1.12
VPS53-204ENST00000437048 BZW2Q9Y6E2 419 aaKnown RBP8.03□□□□□ -1.12
VPS53-204ENST00000437048 SOS2Q07890 1332 aaPredicted RBP8.03□□□□□ -1.12
VPS53-204ENST00000437048 CEBPZQ03701 1054 aaKnown RBP8.03□□□□□ -1.12
VPS53-204ENST00000437048 CCDC186Q7Z3E2 898 aa8.03□□□□□ -1.12
VPS53-204ENST00000437048 PNMA2Q9UL42 364 aa8.03□□□□□ -1.12
VPS53-204ENST00000437048 GOLGA4Q13439 2230 aaKnown RBP8.03□□□□□ -1.12
VPS53-204ENST00000437048 AK9Q5TCS8 1911 aa8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms