RNA–Protein interactions for RNA: ENST00000427526.6

LIG1-202, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,027 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-202ENST00000427526 AKAP2Q9Y2D5 859 aa16.68■□□□□ 0.26
LIG1-202ENST00000427526 FGAP02671 866 aa16.68■□□□□ 0.26
LIG1-202ENST00000427526 CTSWP56202 376 aa16.68■□□□□ 0.26
LIG1-202ENST00000427526 KCNQ4P56696 695 aa16.68■□□□□ 0.26
LIG1-202ENST00000427526 CHAF1AQ13111 956 aaPredicted RBP16.68■□□□□ 0.26
LIG1-202ENST00000427526 LRRFIP1Q32MZ4 808 aaKnown RBP16.68■□□□□ 0.26
LIG1-202ENST00000427526 MRFAP1L1Q96HT8 127 aa16.68■□□□□ 0.26
LIG1-202ENST00000427526 BCL2L12Q9HB09 334 aa16.68■□□□□ 0.26
LIG1-202ENST00000427526 SCARF1Q14162 830 aa16.67■□□□□ 0.26
LIG1-202ENST00000427526 DHX40Q8IX18 779 aaKnown RBP16.67■□□□□ 0.26
LIG1-202ENST00000427526 PCDHA7Q9UN72 937 aa16.67■□□□□ 0.26
LIG1-202ENST00000427526 GOLGA6L19H0YKK7 550 aa16.67■□□□□ 0.26
LIG1-202ENST00000427526 CTIFO43310 598 aaKnown RBP16.67■□□□□ 0.26
LIG1-202ENST00000427526 KINO60870 393 aaKnown RBP16.67■□□□□ 0.26
LIG1-202ENST00000427526 ME1P48163 572 aa16.67■□□□□ 0.26
LIG1-202ENST00000427526 IMMTQ16891 758 aaKnown RBP16.67■□□□□ 0.26
LIG1-202ENST00000427526 TTC39AQ5SRH9 613 aa16.67■□□□□ 0.26
LIG1-202ENST00000427526 ADALQ6DHV7 355 aa16.67■□□□□ 0.26
LIG1-202ENST00000427526 LDHAL6AQ6ZMR3 332 aa16.67■□□□□ 0.26
LIG1-202ENST00000427526 PTF1AQ7RTS3 328 aa16.67■□□□□ 0.26
LIG1-202ENST00000427526 FMR1NBQ8N0W7 255 aaPredicted RBP16.67■□□□□ 0.26
LIG1-202ENST00000427526 SUSD4Q5VX71 490 aa16.67■□□□□ 0.26
LIG1-202ENST00000427526 MB21D2Q8IYB1 491 aaPredicted RBP16.67■□□□□ 0.26
LIG1-202ENST00000427526 FSIP1Q8NA03 581 aa16.67■□□□□ 0.26
LIG1-202ENST00000427526 HPS5Q9UPZ3 1129 aa16.67■□□□□ 0.26
LIG1-202ENST00000427526 BCL9LQ86UU0 1499 aa16.66■□□□□ 0.26
LIG1-202ENST00000427526 CCDC94Q9BW85 323 aaPredicted RBP16.66■□□□□ 0.26
LIG1-202ENST00000427526 PUS7LQ9H0K6 701 aaKnown RBP16.66■□□□□ 0.26
LIG1-202ENST00000427526 RIPOR2Q9Y4F9 1068 aa16.66■□□□□ 0.26
LIG1-202ENST00000427526 A0A1W2PQ27 194 aa16.66■□□□□ 0.26
LIG1-202ENST00000427526 A0A1W2PQ64 194 aa16.66■□□□□ 0.26
LIG1-202ENST00000427526 A0A1W2PQD8 194 aa16.66■□□□□ 0.26
LIG1-202ENST00000427526 HAND2P61296 217 aa16.66■□□□□ 0.26
LIG1-202ENST00000427526 LINC00301Q8NCQ3 95 aa16.66■□□□□ 0.26
LIG1-202ENST00000427526 ABCC12Q96J65 1359 aa16.65■□□□□ 0.26
LIG1-202ENST00000427526 PDE8AO60658 829 aa16.65■□□□□ 0.26
LIG1-202ENST00000427526 ZAP70P43403 619 aa16.65■□□□□ 0.26
LIG1-202ENST00000427526 VPS72Q15906 364 aa16.65■□□□□ 0.26
LIG1-202ENST00000427526 WASHC4Q2M389 1173 aa16.65■□□□□ 0.26
LIG1-202ENST00000427526 GORABQ5T7V8 394 aa16.65■□□□□ 0.26
LIG1-202ENST00000427526 APPBP2Q92624 585 aa16.65■□□□□ 0.26
LIG1-202ENST00000427526 ANO10Q9NW15 660 aa16.65■□□□□ 0.26
LIG1-202ENST00000427526 DDX60Q8IY21 1712 aaKnown RBP16.65■□□□□ 0.26
LIG1-202ENST00000427526 ANKRD18BA2A2Z9 1011 aa16.65■□□□□ 0.26
LIG1-202ENST00000427526 PRC1O43663 620 aa16.65■□□□□ 0.26
LIG1-202ENST00000427526 ANTXR2P58335 489 aa16.65■□□□□ 0.26
LIG1-202ENST00000427526 LRRC8AQ8IWT6 810 aa16.65■□□□□ 0.26
LIG1-202ENST00000427526 MRPS27Q92552 414 aaKnown RBP16.65■□□□□ 0.26
LIG1-202ENST00000427526 CAMTA2O94983 1202 aa16.64■□□□□ 0.26
LIG1-202ENST00000427526 METTL24Q5JXM2 366 aa16.64■□□□□ 0.26
LIG1-202ENST00000427526 FBXO18Q8NFZ0 1043 aa16.64■□□□□ 0.26
LIG1-202ENST00000427526 A0A087WWV3 80 aa16.64■□□□□ 0.25
LIG1-202ENST00000427526 OTUD7BQ6GQQ9 843 aa16.64■□□□□ 0.25
LIG1-202ENST00000427526 CNNM1Q9NRU3 951 aa16.64■□□□□ 0.25
LIG1-202ENST00000427526 DHX16O60231 1041 aaKnown RBP16.64■□□□□ 0.25
LIG1-202ENST00000427526 POLR3EQ9NVU0 708 aa16.64■□□□□ 0.25
LIG1-202ENST00000427526 CLIC4Q9Y696 253 aa16.64■□□□□ 0.25
LIG1-202ENST00000427526 WDR19Q8NEZ3 1342 aa16.63■□□□□ 0.25
LIG1-202ENST00000427526 KLF18A0A0U1RQI7 1052 aa16.63■□□□□ 0.25
LIG1-202ENST00000427526 RBM6P78332 1123 aaKnown RBP16.63■□□□□ 0.25
LIG1-202ENST00000427526 FAM182BQ5T319 152 aa16.63■□□□□ 0.25
LIG1-202ENST00000427526 ANKRD7Q92527 254 aa16.63■□□□□ 0.25
LIG1-202ENST00000427526 C8orf76Q96K31 380 aa16.63■□□□□ 0.25
LIG1-202ENST00000427526 NEDD4P46934 1319 aa16.63■□□□□ 0.25
LIG1-202ENST00000427526 NDUFA8P51970 172 aa16.63■□□□□ 0.25
LIG1-202ENST00000427526 PI16Q6UXB8 463 aa16.63■□□□□ 0.25
LIG1-202ENST00000427526 SMIM5Q71RC9 77 aa16.63■□□□□ 0.25
LIG1-202ENST00000427526 NCOA7Q8NI08 942 aa16.63■□□□□ 0.25
LIG1-202ENST00000427526 BBXQ8WY36 941 aaPredicted RBP16.63■□□□□ 0.25
LIG1-202ENST00000427526 SMARCC1Q92922 1105 aaPredicted RBP16.63■□□□□ 0.25
LIG1-202ENST00000427526 C16orf45Q96MC5 204 aaPredicted RBP16.63■□□□□ 0.25
LIG1-202ENST00000427526 NUP98P52948 1817 aa16.63■□□□□ 0.25
LIG1-202ENST00000427526 A0A1B0GVL5 298 aa16.62■□□□□ 0.25
LIG1-202ENST00000427526 BECN2A8MW95 431 aa16.62■□□□□ 0.25
LIG1-202ENST00000427526 YEATS4O95619 227 aa16.62■□□□□ 0.25
LIG1-202ENST00000427526 ERCC4Q92889 916 aaPredicted RBP16.62■□□□□ 0.25
LIG1-202ENST00000427526 NEMFO60524 1076 aa16.62■□□□□ 0.25
LIG1-202ENST00000427526 ATP2B3Q16720 1220 aa16.62■□□□□ 0.25
LIG1-202ENST00000427526 FNBP4Q8N3X1 1017 aaPredicted RBP16.62■□□□□ 0.25
LIG1-202ENST00000427526 KCNG4Q8TDN1 519 aa16.62■□□□□ 0.25
LIG1-202ENST00000427526 ORC3Q9UBD5 711 aaPredicted RBP16.62■□□□□ 0.25
LIG1-202ENST00000427526 RIC1Q4ADV7 1423 aa16.62■□□□□ 0.25
LIG1-202ENST00000427526 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.62■□□□□ 0.25
LIG1-202ENST00000427526 GOLGA8BA8MQT2 603 aa16.62■□□□□ 0.25
LIG1-202ENST00000427526 ZNF213O14771 459 aa16.62■□□□□ 0.25
LIG1-202ENST00000427526 GPAA1O43292 621 aa16.62■□□□□ 0.25
LIG1-202ENST00000427526 POLR3DP05423 398 aaPredicted RBP16.62■□□□□ 0.25
LIG1-202ENST00000427526 ARID5BQ14865 1188 aa16.62■□□□□ 0.25
LIG1-202ENST00000427526 BRAPQ7Z569 592 aa16.62■□□□□ 0.25
LIG1-202ENST00000427526 CEP57L1Q8IYX8 460 aa16.62■□□□□ 0.25
LIG1-202ENST00000427526 LINC00116Q8NCU8 138 aa16.62■□□□□ 0.25
LIG1-202ENST00000427526 USP21Q9UK80 565 aa16.62■□□□□ 0.25
LIG1-202ENST00000427526 TNNT1P13805 278 aa16.61■□□□□ 0.25
LIG1-202ENST00000427526 MYSM1Q5VVJ2 828 aa16.61■□□□□ 0.25
LIG1-202ENST00000427526 RGS22Q8NE09 1264 aa16.61■□□□□ 0.25
LIG1-202ENST00000427526 HELBQ8NG08 1087 aaPredicted RBP16.61■□□□□ 0.25
LIG1-202ENST00000427526 ARID3AQ99856 593 aa16.61■□□□□ 0.25
LIG1-202ENST00000427526 UTP14AQ9BVJ6 771 aaKnown RBP16.61■□□□□ 0.25
LIG1-202ENST00000427526 NBPF3Q9H094 633 aa16.61■□□□□ 0.25
LIG1-202ENST00000427526 NIP7Q9Y221 180 aaKnown RBP eCLIP16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms