RNA–Protein interactions for RNA: ENST00000419533.1

UBR4-206, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 5

Gene UBR4, Length 5,583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-206ENST00000419533 UQCRHLA0A096LP55 91 aa9.66□□□□□ -0.86
UBR4-206ENST00000419533 SPDYE3A6NKU9 549 aa9.66□□□□□ -0.86
UBR4-206ENST00000419533 UQCRHP07919 91 aa9.66□□□□□ -0.86
UBR4-206ENST00000419533 CALML3P27482 149 aa9.66□□□□□ -0.86
UBR4-206ENST00000419533 STX1AQ16623 288 aa9.66□□□□□ -0.86
UBR4-206ENST00000419533 ESYT1Q9BSJ8 1104 aa9.66□□□□□ -0.86
UBR4-206ENST00000419533 GGA1Q9UJY5 639 aa9.66□□□□□ -0.86
UBR4-206ENST00000419533 PDE8AO60658 829 aa9.66□□□□□ -0.86
UBR4-206ENST00000419533 PHACTR3Q96KR7 559 aa9.66□□□□□ -0.86
UBR4-206ENST00000419533 BCS1LQ9Y276 419 aa9.66□□□□□ -0.86
UBR4-206ENST00000419533 H0YHG0 523 aa9.66□□□□□ -0.86
UBR4-206ENST00000419533 KIF5CO60282 957 aa9.66□□□□□ -0.86
UBR4-206ENST00000419533 NMIQ13287 307 aaPredicted RBP9.66□□□□□ -0.86
UBR4-206ENST00000419533 CERS3Q8IU89 383 aa9.66□□□□□ -0.86
UBR4-206ENST00000419533 HOOK2Q96ED9 719 aa9.66□□□□□ -0.86
UBR4-206ENST00000419533 ATF5Q9Y2D1 282 aaPredicted RBP9.66□□□□□ -0.86
UBR4-206ENST00000419533 GJA3Q9Y6H8 435 aa9.66□□□□□ -0.86
UBR4-206ENST00000419533 CCDC172P0C7W6 258 aa9.66□□□□□ -0.86
UBR4-206ENST00000419533 METTL22Q9BUU2 404 aaPredicted RBP9.66□□□□□ -0.86
UBR4-206ENST00000419533 PRC1O43663 620 aa9.65□□□□□ -0.86
UBR4-206ENST00000419533 IGHDP01880 384 aa9.65□□□□□ -0.86
UBR4-206ENST00000419533 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP9.65□□□□□ -0.86
UBR4-206ENST00000419533 CRKLP46109 303 aaKnown RBP9.65□□□□□ -0.86
UBR4-206ENST00000419533 NCBP1Q09161 790 aaKnown RBP9.65□□□□□ -0.86
UBR4-206ENST00000419533 DPY19L2Q6NUT2 758 aa9.65□□□□□ -0.86
UBR4-206ENST00000419533 FNBP4Q8N3X1 1017 aaPredicted RBP9.65□□□□□ -0.86
UBR4-206ENST00000419533 BICC1Q9H694 974 aaKnown RBP9.65□□□□□ -0.86
UBR4-206ENST00000419533 PODXL2Q9NZ53 605 aa9.65□□□□□ -0.86
UBR4-206ENST00000419533 WWC3Q9ULE0 1092 aa9.65□□□□□ -0.86
UBR4-206ENST00000419533 RAD50Q92878 1312 aa9.65□□□□□ -0.86
UBR4-206ENST00000419533 HIBADHP31937 336 aaKnown RBP9.65□□□□□ -0.86
UBR4-206ENST00000419533 MIGA1Q8NAN2 632 aa9.65□□□□□ -0.86
UBR4-206ENST00000419533 TFIP11Q9UBB9 837 aaKnown RBP9.65□□□□□ -0.86
UBR4-206ENST00000419533 PUM3Q15397 648 aaKnown RBP9.65□□□□□ -0.87
UBR4-206ENST00000419533 LEKR1Q6ZMV7 388 aa9.65□□□□□ -0.87
UBR4-206ENST00000419533 Q6ZUG5 572 aa9.65□□□□□ -0.87
UBR4-206ENST00000419533 ITGA6P23229 1130 aa9.64□□□□□ -0.87
UBR4-206ENST00000419533 USP8P40818 1118 aa9.64□□□□□ -0.87
UBR4-206ENST00000419533 STAT6P42226 847 aa9.64□□□□□ -0.87
UBR4-206ENST00000419533 CEP85Q6P2H3 762 aa9.64□□□□□ -0.87
UBR4-206ENST00000419533 TAX1BP1Q86VP1 789 aa9.64□□□□□ -0.87
UBR4-206ENST00000419533 KCNG4Q8TDN1 519 aa9.64□□□□□ -0.87
UBR4-206ENST00000419533 NAP1L4Q99733 375 aaKnown RBP9.64□□□□□ -0.87
UBR4-206ENST00000419533 CENPHQ9H3R5 247 aa9.64□□□□□ -0.87
UBR4-206ENST00000419533 AXIN2Q9Y2T1 843 aa9.64□□□□□ -0.87
UBR4-206ENST00000419533 NCAPD2Q15021 1401 aa9.64□□□□□ -0.87
UBR4-206ENST00000419533 SSFA2P28290 1259 aa9.64□□□□□ -0.87
UBR4-206ENST00000419533 C2CD5Q86YS7 1000 aa9.64□□□□□ -0.87
UBR4-206ENST00000419533 MPNDQ8N594 471 aa9.64□□□□□ -0.87
UBR4-206ENST00000419533 ZNF496Q96IT1 587 aaPredicted RBP9.64□□□□□ -0.87
UBR4-206ENST00000419533 CAVIN2O95810 425 aa9.64□□□□□ -0.87
UBR4-206ENST00000419533 IL6STP40189 918 aaPredicted RBP9.64□□□□□ -0.87
UBR4-206ENST00000419533 PICK1Q9NRD5 415 aa9.64□□□□□ -0.87
UBR4-206ENST00000419533 EYA2O00167 538 aa9.64□□□□□ -0.87
UBR4-206ENST00000419533 GNA11P29992 359 aa9.64□□□□□ -0.87
UBR4-206ENST00000419533 TEX11Q8IYF3 940 aa9.64□□□□□ -0.87
UBR4-206ENST00000419533 FERMT1Q9BQL6 677 aa9.64□□□□□ -0.87
UBR4-206ENST00000419533 TBC1D2Q9BYX2 928 aa9.64□□□□□ -0.87
UBR4-206ENST00000419533 PANK2Q9BZ23 570 aa9.64□□□□□ -0.87
UBR4-206ENST00000419533 GBP3Q9H0R5 595 aa9.64□□□□□ -0.87
UBR4-206ENST00000419533 RBM28Q9NW13 759 aaKnown RBP9.64□□□□□ -0.87
UBR4-206ENST00000419533 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.64□□□□□ -0.87
UBR4-206ENST00000419533 KRT13P13646 458 aa9.64□□□□□ -0.87
UBR4-206ENST00000419533 CTNNA2P26232 953 aa9.64□□□□□ -0.87
UBR4-206ENST00000419533 DPP8Q6V1X1 898 aaPredicted RBP9.64□□□□□ -0.87
UBR4-206ENST00000419533 ARHGAP27Q6ZUM4 889 aa9.64□□□□□ -0.87
UBR4-206ENST00000419533 TSPYL6Q8N831 410 aa9.64□□□□□ -0.87
UBR4-206ENST00000419533 HELLSQ9NRZ9 838 aa9.64□□□□□ -0.87
UBR4-206ENST00000419533 FAM89AQ96GI7 184 aa9.63□□□□□ -0.87
UBR4-206ENST00000419533 ALS2CR12Q96Q35 445 aa9.63□□□□□ -0.87
UBR4-206ENST00000419533 TMOD4Q9NZQ9 345 aa9.63□□□□□ -0.87
UBR4-206ENST00000419533 CLIP2Q9UDT6 1046 aa9.63□□□□□ -0.87
UBR4-206ENST00000419533 ASAP1Q9ULH1 1129 aa9.63□□□□□ -0.87
UBR4-206ENST00000419533 SYKP43405 635 aa9.63□□□□□ -0.87
UBR4-206ENST00000419533 TRIM47Q96LD4 638 aa9.63□□□□□ -0.87
UBR4-206ENST00000419533 TSPYL1Q9H0U9 437 aa9.63□□□□□ -0.87
UBR4-206ENST00000419533 DCTPP1Q9H773 170 aa9.63□□□□□ -0.87
UBR4-206ENST00000419533 PUF60Q9UHX1 559 aaKnown RBP9.63□□□□□ -0.87
UBR4-206ENST00000419533 NEMFO60524 1076 aa9.63□□□□□ -0.87
UBR4-206ENST00000419533 UBE2HP62256 183 aa9.63□□□□□ -0.87
UBR4-206ENST00000419533 SLC16A10Q8TF71 515 aa9.63□□□□□ -0.87
UBR4-206ENST00000419533 PIGBQ92521 554 aa9.63□□□□□ -0.87
UBR4-206ENST00000419533 RPS6KA4O75676 772 aa9.63□□□□□ -0.87
UBR4-206ENST00000419533 GSDMDP57764 484 aa9.63□□□□□ -0.87
UBR4-206ENST00000419533 LARGE2Q8N3Y3 721 aa9.63□□□□□ -0.87
UBR4-206ENST00000419533 WDR66Q8TBY9 1149 aa9.63□□□□□ -0.87
UBR4-206ENST00000419533 CCDC97Q96F63 343 aaPredicted RBP9.63□□□□□ -0.87
UBR4-206ENST00000419533 LRRC2Q9BYS8 371 aa9.63□□□□□ -0.87
UBR4-206ENST00000419533 CCDC171Q6TFL3 1326 aa9.63□□□□□ -0.87
UBR4-206ENST00000419533 A1BGP04217 495 aa9.62□□□□□ -0.87
UBR4-206ENST00000419533 ZSCAN22P10073 491 aaPredicted RBP9.62□□□□□ -0.87
UBR4-206ENST00000419533 CASQ1P31415 396 aa9.62□□□□□ -0.87
UBR4-206ENST00000419533 PAFAH1B1P43034 410 aa9.62□□□□□ -0.87
UBR4-206ENST00000419533 CTNNBL1Q8WYA6 563 aaPredicted RBP9.62□□□□□ -0.87
UBR4-206ENST00000419533 TBC1D5Q92609 795 aa9.62□□□□□ -0.87
UBR4-206ENST00000419533 TNPO1Q92973 898 aaKnown RBP9.62□□□□□ -0.87
UBR4-206ENST00000419533 TMX3Q96JJ7 454 aa9.62□□□□□ -0.87
UBR4-206ENST00000419533 GTPBP4Q9BZE4 634 aaKnown RBP9.62□□□□□ -0.87
UBR4-206ENST00000419533 PARP1P09874 1014 aaKnown RBP9.62□□□□□ -0.87
UBR4-206ENST00000419533 MCM3P25205 808 aa9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms