RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 PRDX5P30044 214 aa15.3■□□□□ 0.04
SKA1-203ENST00000417656 HDAC1Q13547 482 aaPredicted RBP15.3■□□□□ 0.04
SKA1-203ENST00000417656 SPATA5Q8NB90 893 aa15.3■□□□□ 0.04
SKA1-203ENST00000417656 MYO5AQ9Y4I1 1855 aaKnown RBP15.29■□□□□ 0.04
SKA1-203ENST00000417656 MAST3O60307 1309 aa15.29■□□□□ 0.04
SKA1-203ENST00000417656 AOX1Q06278 1338 aa15.29■□□□□ 0.04
SKA1-203ENST00000417656 IFIT2P09913 472 aaKnown RBP15.29■□□□□ 0.04
SKA1-203ENST00000417656 DLGAP5Q15398 846 aa15.29■□□□□ 0.04
SKA1-203ENST00000417656 NBPF9Q3BBW0 867 aa15.29■□□□□ 0.04
SKA1-203ENST00000417656 CFAP100Q494V2 611 aa15.29■□□□□ 0.04
SKA1-203ENST00000417656 CNTROBQ8N137 903 aa15.29■□□□□ 0.04
SKA1-203ENST00000417656 ZC3H15Q8WU90 426 aaKnown RBP15.29■□□□□ 0.04
SKA1-203ENST00000417656 ZBED3Q96IU2 234 aaPredicted RBP15.29■□□□□ 0.04
SKA1-203ENST00000417656 GLIS2Q9BZE0 524 aaPredicted RBP15.29■□□□□ 0.04
SKA1-203ENST00000417656 SNRKQ9NRH2 765 aa15.29■□□□□ 0.04
SKA1-203ENST00000417656 PGAP2Q9UHJ9 254 aa15.29■□□□□ 0.04
SKA1-203ENST00000417656 DOCK2Q92608 1830 aa15.29■□□□□ 0.04
SKA1-203ENST00000417656 POLR2AP24928 1970 aaKnown RBP15.28■□□□□ 0.04
SKA1-203ENST00000417656 WNT10BO00744 389 aa15.28■□□□□ 0.04
SKA1-203ENST00000417656 CRKP46108 304 aa15.28■□□□□ 0.04
SKA1-203ENST00000417656 MMP14P50281 582 aa15.28■□□□□ 0.04
SKA1-203ENST00000417656 RBM5P52756 815 aaKnown RBP eCLIP15.28■□□□□ 0.04
SKA1-203ENST00000417656 ANGEL2Q5VTE6 544 aaKnown RBP15.28■□□□□ 0.04
SKA1-203ENST00000417656 ZNF512BQ96KM6 892 aaPredicted RBP15.28■□□□□ 0.04
SKA1-203ENST00000417656 ABCF2Q9UG63 623 aa15.28■□□□□ 0.04
SKA1-203ENST00000417656 SUGT1Q9Y2Z0 365 aa15.28■□□□□ 0.04
SKA1-203ENST00000417656 TRPM7Q96QT4 1865 aa15.28■□□□□ 0.04
SKA1-203ENST00000417656 MYH2Q9UKX2 1941 aa15.27■□□□□ 0.04
SKA1-203ENST00000417656 PASKQ96RG2 1323 aa15.27■□□□□ 0.04
SKA1-203ENST00000417656 SPDYE2BA6NHP3 402 aa15.27■□□□□ 0.04
SKA1-203ENST00000417656 ADM5C9JUS6 153 aa15.27■□□□□ 0.04
SKA1-203ENST00000417656 TRAF5O00463 557 aa15.27■□□□□ 0.04
SKA1-203ENST00000417656 ITGBL1O95965 494 aaPredicted RBP15.27■□□□□ 0.04
SKA1-203ENST00000417656 LDHBP07195 334 aaKnown RBP15.27■□□□□ 0.04
SKA1-203ENST00000417656 SPDYE6P0CI01 402 aa15.27■□□□□ 0.04
SKA1-203ENST00000417656 TBC1D9Q6ZT07 1266 aa15.27■□□□□ 0.04
SKA1-203ENST00000417656 ZGPATQ8N5A5 531 aaKnown RBP15.27■□□□□ 0.04
SKA1-203ENST00000417656 MTMR14Q8NCE2 650 aa15.27■□□□□ 0.04
SKA1-203ENST00000417656 SERPINA10Q9UK55 444 aa15.27■□□□□ 0.04
SKA1-203ENST00000417656 CENPBP07199 599 aaPredicted RBP15.26■□□□□ 0.03
SKA1-203ENST00000417656 ZAP70P43403 619 aa15.26■□□□□ 0.03
SKA1-203ENST00000417656 FMR1Q06787 632 aaKnown RBP eCLIP15.26■□□□□ 0.03
SKA1-203ENST00000417656 DIXDC1Q155Q3 683 aa15.26■□□□□ 0.03
SKA1-203ENST00000417656 DZIP1Q86YF9 867 aaKnown RBP15.26■□□□□ 0.03
SKA1-203ENST00000417656 TEKT1Q969V4 418 aa15.26■□□□□ 0.03
SKA1-203ENST00000417656 DCPSQ96C86 337 aaKnown RBP15.26■□□□□ 0.03
SKA1-203ENST00000417656 SCAF8Q9UPN6 1271 aaKnown RBP15.26■□□□□ 0.03
SKA1-203ENST00000417656 NDUFB9Q9Y6M9 179 aa15.26■□□□□ 0.03
SKA1-203ENST00000417656 PITPNM2Q9BZ72 1349 aa15.25■□□□□ 0.03
SKA1-203ENST00000417656 CLRN2A0PK11 232 aa15.25■□□□□ 0.03
SKA1-203ENST00000417656 IGHDP01880 384 aa15.25■□□□□ 0.03
SKA1-203ENST00000417656 HSPA6P17066 643 aa15.25■□□□□ 0.03
SKA1-203ENST00000417656 HDLBPQ00341 1268 aaKnown RBP15.25■□□□□ 0.03
SKA1-203ENST00000417656 DLK2Q6UY11 383 aa15.25■□□□□ 0.03
SKA1-203ENST00000417656 KRT26Q7Z3Y9 468 aa15.25■□□□□ 0.03
SKA1-203ENST00000417656 USP48Q86UV5 1035 aa15.25■□□□□ 0.03
SKA1-203ENST00000417656 GCC1Q96CN9 775 aa15.25■□□□□ 0.03
SKA1-203ENST00000417656 PRMT6Q96LA8 375 aaPredicted RBP15.25■□□□□ 0.03
SKA1-203ENST00000417656 RWDD1Q9H446 243 aaPredicted RBP15.25■□□□□ 0.03
SKA1-203ENST00000417656 CYP2E1P05181 493 aaPredicted RBP15.24■□□□□ 0.03
SKA1-203ENST00000417656 SPTY2D1Q68D10 685 aaPredicted RBP15.24■□□□□ 0.03
SKA1-203ENST00000417656 ERICH6Q7L0X2 663 aa15.24■□□□□ 0.03
SKA1-203ENST00000417656 CDC37L1Q7L3B6 337 aa15.24■□□□□ 0.03
SKA1-203ENST00000417656 SULF1Q8IWU6 871 aa15.24■□□□□ 0.03
SKA1-203ENST00000417656 PIH1D3Q9NQM4 214 aaKnown RBP15.24■□□□□ 0.03
SKA1-203ENST00000417656 DAGLAQ9Y4D2 1042 aa15.24■□□□□ 0.03
SKA1-203ENST00000417656 MYO1BO43795 1136 aa15.23■□□□□ 0.03
SKA1-203ENST00000417656 APLP1P51693 650 aa15.23■□□□□ 0.03
SKA1-203ENST00000417656 MECOMQ03112 1051 aa15.23■□□□□ 0.03
SKA1-203ENST00000417656 SPDYE2Q495Y8 402 aa15.23■□□□□ 0.03
SKA1-203ENST00000417656 ANKRD45Q5TZF3 282 aa15.23■□□□□ 0.03
SKA1-203ENST00000417656 TSHZ3Q63HK5 1081 aa15.23■□□□□ 0.03
SKA1-203ENST00000417656 HHIPL2Q6UWX4 724 aa15.23■□□□□ 0.03
SKA1-203ENST00000417656 APOBEC3FQ8IUX4 373 aaKnown RBP15.23■□□□□ 0.03
SKA1-203ENST00000417656 SMC5Q8IY18 1101 aa15.23■□□□□ 0.03
SKA1-203ENST00000417656 OTUD7AQ8TE49 926 aaPredicted RBP15.23■□□□□ 0.03
SKA1-203ENST00000417656 ZDHHC15Q96MV8 337 aa15.23■□□□□ 0.03
SKA1-203ENST00000417656 DNAJC2Q99543 621 aaKnown RBP15.23■□□□□ 0.03
SKA1-203ENST00000417656 TDRD3Q9H7E2 651 aaKnown RBP15.23■□□□□ 0.03
SKA1-203ENST00000417656 VEZTQ9HBM0 779 aa15.23■□□□□ 0.03
SKA1-203ENST00000417656 RAI14Q9P0K7 980 aa15.23■□□□□ 0.03
SKA1-203ENST00000417656 LRP2BPQ9P2M1 347 aa15.23■□□□□ 0.03
SKA1-203ENST00000417656 GAKO14976 1311 aa15.22■□□□□ 0.03
SKA1-203ENST00000417656 ZNF384Q8TF68 577 aa15.22■□□□□ 0.03
SKA1-203ENST00000417656 PPIL4Q8WUA2 492 aaKnown RBP eCLIP15.22■□□□□ 0.03
SKA1-203ENST00000417656 ANTXR1Q9H6X2 564 aa15.22■□□□□ 0.03
SKA1-203ENST00000417656 ZNF408Q9H9D4 720 aa15.22■□□□□ 0.03
SKA1-203ENST00000417656 ZNF70Q9UC06 446 aaPredicted RBP15.22■□□□□ 0.03
SKA1-203ENST00000417656 MYH7P12883 1935 aa15.21■□□□□ 0.03
SKA1-203ENST00000417656 MROH7-TTC4A0A0A0MT08 1334 aa15.21■□□□□ 0.03
SKA1-203ENST00000417656 ATP5JP18859 108 aa15.21■□□□□ 0.03
SKA1-203ENST00000417656 HTRA3P83110 453 aa15.21■□□□□ 0.03
SKA1-203ENST00000417656 B4GALNT3Q6L9W6 998 aa15.21■□□□□ 0.03
SKA1-203ENST00000417656 APOBEC3HQ6NTF7 200 aaKnown RBP15.21■□□□□ 0.03
SKA1-203ENST00000417656 NSUN4Q96CB9 384 aaKnown RBP15.21■□□□□ 0.03
SKA1-203ENST00000417656 EDC3Q96F86 508 aaKnown RBP15.21■□□□□ 0.03
SKA1-203ENST00000417656 CDCA5Q96FF9 252 aa15.21■□□□□ 0.03
SKA1-203ENST00000417656 GPATCH3Q96I76 525 aa15.21■□□□□ 0.03
SKA1-203ENST00000417656 MRIQ9BWK5 157 aa15.21■□□□□ 0.03
SKA1-203ENST00000417656 BOLA2Q9H3K6 86 aa15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms