RNA–Protein interactions for RNA: ENST00000417088.2

RPS28-201, Transcript of ribosomal protein S28, humanhuman

TSL 2

Gene RPS28, Length 334 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-201ENST00000417088 FBXO46Q6PJ61 603 aaPredicted RBP18.64■□□□□ 0.57
RPS28-201ENST00000417088 ANKRD13AQ8IZ07 590 aa18.64■□□□□ 0.57
RPS28-201ENST00000417088 TEPSINQ96N21 525 aa18.64■□□□□ 0.57
RPS28-201ENST00000417088 USP44Q9H0E7 712 aa18.64■□□□□ 0.57
RPS28-201ENST00000417088 VPS37DQ86XT2 251 aa18.63■□□□□ 0.57
RPS28-201ENST00000417088 CDAN1Q8IWY9 1227 aa18.63■□□□□ 0.57
RPS28-201ENST00000417088 KLHDC4Q8TBB5 520 aa18.63■□□□□ 0.57
RPS28-201ENST00000417088 TCP10L2B9ZVM9 353 aa18.62■□□□□ 0.57
RPS28-201ENST00000417088 SLFN5Q08AF3 891 aa18.62■□□□□ 0.57
RPS28-201ENST00000417088 CHAF1AQ13111 956 aaPredicted RBP18.62■□□□□ 0.57
RPS28-201ENST00000417088 CAVIN4Q5BKX8 364 aa18.62■□□□□ 0.57
RPS28-201ENST00000417088 FRAT2O75474 233 aaPredicted RBP18.61■□□□□ 0.57
RPS28-201ENST00000417088 SLC34A2O95436 690 aa18.61■□□□□ 0.57
RPS28-201ENST00000417088 BCAMP50895 628 aa18.61■□□□□ 0.57
RPS28-201ENST00000417088 TBC1D22AQ8WUA7 517 aa18.61■□□□□ 0.57
RPS28-201ENST00000417088 TMEM39BQ9GZU3 492 aa18.61■□□□□ 0.57
RPS28-201ENST00000417088 FGFR2P21802 821 aa18.6■□□□□ 0.57
RPS28-201ENST00000417088 HDLBPQ00341 1268 aaKnown RBP18.6■□□□□ 0.57
RPS28-201ENST00000417088 PTPN18Q99952 460 aa18.6■□□□□ 0.57
RPS28-201ENST00000417088 ELP3Q9H9T3 547 aa18.6■□□□□ 0.57
RPS28-201ENST00000417088 ARAP2Q8WZ64 1704 aa18.6■□□□□ 0.57
RPS28-201ENST00000417088 TESPA1A2RU30 521 aaPredicted RBP18.59■□□□□ 0.57
RPS28-201ENST00000417088 RFX5P48382 616 aaPredicted RBP18.59■□□□□ 0.57
RPS28-201ENST00000417088 TNNI2P48788 182 aa18.59■□□□□ 0.57
RPS28-201ENST00000417088 OTUD7BQ6GQQ9 843 aa18.59■□□□□ 0.57
RPS28-201ENST00000417088 PPP1R3FQ6ZSY5 799 aaPredicted RBP18.59■□□□□ 0.57
RPS28-201ENST00000417088 OPTNQ96CV9 577 aa18.59■□□□□ 0.57
RPS28-201ENST00000417088 LAMB1P07942 1786 aa18.59■□□□□ 0.57
RPS28-201ENST00000417088 KIF16BQ96L93 1317 aa18.58■□□□□ 0.57
RPS28-201ENST00000417088 CRHR2Q13324 411 aa18.58■□□□□ 0.56
RPS28-201ENST00000417088 PUM3Q15397 648 aaKnown RBP18.58■□□□□ 0.56
RPS28-201ENST00000417088 ALDH1L2Q3SY69 923 aa18.58■□□□□ 0.56
RPS28-201ENST00000417088 TEKT1Q969V4 418 aa18.58■□□□□ 0.56
RPS28-201ENST00000417088 CDCA7LQ96GN5 454 aa18.58■□□□□ 0.56
RPS28-201ENST00000417088 MRIQ9BWK5 157 aa18.58■□□□□ 0.56
RPS28-201ENST00000417088 TRIM17Q9Y577 477 aa18.58■□□□□ 0.56
RPS28-201ENST00000417088 EYA2O00167 538 aa18.57■□□□□ 0.56
RPS28-201ENST00000417088 IFIT1P09914 478 aaKnown RBP18.57■□□□□ 0.56
RPS28-201ENST00000417088 CACNB3P54284 484 aa18.57■□□□□ 0.56
RPS28-201ENST00000417088 MAP3K9P80192 1104 aa18.57■□□□□ 0.56
RPS28-201ENST00000417088 OTOP1Q7RTM1 612 aa18.57■□□□□ 0.56
RPS28-201ENST00000417088 DDX55Q8NHQ9 600 aaKnown RBP eCLIP18.57■□□□□ 0.562e-6■□□□□ 9.9
RPS28-201ENST00000417088 CNKSR2Q8WXI2 1034 aa18.57■□□□□ 0.56
RPS28-201ENST00000417088 MS4A4AQ96JQ5 239 aa18.57■□□□□ 0.56
RPS28-201ENST00000417088 ZDHHC15Q96MV8 337 aa18.57■□□□□ 0.56
RPS28-201ENST00000417088 OTOFQ9HC10 1997 aa18.57■□□□□ 0.56
RPS28-201ENST00000417088 VGLL4Q14135 290 aa18.56■□□□□ 0.56
RPS28-201ENST00000417088 SMC4Q9NTJ3 1288 aa18.56■□□□□ 0.56
RPS28-201ENST00000417088 SUGT1Q9Y2Z0 365 aa18.56■□□□□ 0.56
RPS28-201ENST00000417088 APOBEC3HQ6NTF7 200 aaKnown RBP18.55■□□□□ 0.56
RPS28-201ENST00000417088 TRMT2AQ8IZ69 625 aaKnown RBP18.55■□□□□ 0.56
RPS28-201ENST00000417088 BRI3BPQ8WY22 251 aa18.55■□□□□ 0.56
RPS28-201ENST00000417088 ERO1AQ96HE7 468 aa18.55■□□□□ 0.56
RPS28-201ENST00000417088 MAST3O60307 1309 aa18.54■□□□□ 0.56
RPS28-201ENST00000417088 SLC5A1P13866 664 aa18.54■□□□□ 0.56
RPS28-201ENST00000417088 HHIPL2Q6UWX4 724 aa18.54■□□□□ 0.56
RPS28-201ENST00000417088 ATG9AQ7Z3C6 839 aa18.54■□□□□ 0.56
RPS28-201ENST00000417088 FAM83AQ86UY5 434 aa18.54■□□□□ 0.56
RPS28-201ENST00000417088 CD99L2Q8TCZ2 262 aa18.54■□□□□ 0.56
RPS28-201ENST00000417088 LPIN2Q92539 896 aa18.54■□□□□ 0.56
RPS28-201ENST00000417088 CSADQ9Y600 493 aa18.54■□□□□ 0.56
RPS28-201ENST00000417088 HTTP42858 3142 aa18.53■□□□□ 0.56
RPS28-201ENST00000417088 GTF2A2P52657 109 aa18.53■□□□□ 0.56
RPS28-201ENST00000417088 SP3Q02447 781 aa18.53■□□□□ 0.56
RPS28-201ENST00000417088 FKBP1CQ5VVH2 108 aa18.53■□□□□ 0.56
RPS28-201ENST00000417088 OTUD5Q96G74 571 aa18.53■□□□□ 0.56
RPS28-201ENST00000417088 TMOD2Q9NZR1 351 aa18.53■□□□□ 0.56
RPS28-201ENST00000417088 CCL15-CCL14A0A0B4J2E2 113 aa18.52■□□□□ 0.56
RPS28-201ENST00000417088 SPDYE5A6NIY4 337 aa18.52■□□□□ 0.56
RPS28-201ENST00000417088 UBTFL1P0CB47 393 aaPredicted RBP18.52■□□□□ 0.56
RPS28-201ENST00000417088 CAP1Q01518 475 aa18.52■□□□□ 0.56
RPS28-201ENST00000417088 CCL15Q16663 113 aa18.52■□□□□ 0.56
RPS28-201ENST00000417088 WDR66Q8TBY9 1149 aa18.52■□□□□ 0.56
RPS28-201ENST00000417088 PTPN22Q9Y2R2 807 aa18.52■□□□□ 0.56
RPS28-201ENST00000417088 SNCAIPQ9Y6H5 919 aa18.52■□□□□ 0.56
RPS28-201ENST00000417088 TAF1CQ15572 869 aaPredicted RBP18.51■□□□□ 0.55
RPS28-201ENST00000417088 PRPF38BQ5VTL8 546 aaKnown RBP18.51■□□□□ 0.55
RPS28-201ENST00000417088 SIL1Q9H173 461 aa18.51■□□□□ 0.55
RPS28-201ENST00000417088 EFCC1Q9HA90 598 aa18.51■□□□□ 0.55
RPS28-201ENST00000417088 FBXO3Q9UK99 471 aa18.51■□□□□ 0.55
RPS28-201ENST00000417088 NOB1Q9ULX3 412 aaKnown RBP18.51■□□□□ 0.55
RPS28-201ENST00000417088 CIAO1O76071 339 aa18.5■□□□□ 0.55
RPS28-201ENST00000417088 ERO1BQ86YB8 467 aa18.5■□□□□ 0.55
RPS28-201ENST00000417088 FAM43AQ8N2R8 423 aa18.5■□□□□ 0.55
RPS28-201ENST00000417088 ZKSCAN4Q969J2 545 aaPredicted RBP18.5■□□□□ 0.55
RPS28-201ENST00000417088 HOOK2Q96ED9 719 aa18.5■□□□□ 0.55
RPS28-201ENST00000417088 WRNIP1Q96S55 665 aa18.5■□□□□ 0.55
RPS28-201ENST00000417088 CT47B1P0C2W7 299 aaPredicted RBP18.49■□□□□ 0.55
RPS28-201ENST00000417088 ATP2B3Q16720 1220 aa18.49■□□□□ 0.55
RPS28-201ENST00000417088 INTS3Q68E01 1043 aaKnown RBP18.49■□□□□ 0.55
RPS28-201ENST00000417088 ZFYVE28Q9HCC9 887 aa18.49■□□□□ 0.55
RPS28-201ENST00000417088 CEP126Q9P2H0 1117 aa18.49■□□□□ 0.55
RPS28-201ENST00000417088 DAGLAQ9Y4D2 1042 aa18.49■□□□□ 0.55
RPS28-201ENST00000417088 RPAP1Q9BWH6 1393 aaPredicted RBP18.49■□□□□ 0.55
RPS28-201ENST00000417088 PRDX5P30044 214 aa18.48■□□□□ 0.55
RPS28-201ENST00000417088 DIXDC1Q155Q3 683 aa18.48■□□□□ 0.55
RPS28-201ENST00000417088 FAM151AQ8WW52 585 aa18.48■□□□□ 0.55
RPS28-201ENST00000417088 API5Q9BZZ5 524 aaKnown RBP18.48■□□□□ 0.55
RPS28-201ENST00000417088 POTEFA5A3E0 1075 aa18.47■□□□□ 0.55
RPS28-201ENST00000417088 IRF6O14896 467 aa18.47■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms