RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.35■□□□□ 0.21
LINC00339-202ENST00000416769 BRI3BPQ8WY22 251 aa16.35■□□□□ 0.21
LINC00339-202ENST00000416769 OPTNQ96CV9 577 aa16.35■□□□□ 0.21
LINC00339-202ENST00000416769 MS4A4AQ96JQ5 239 aa16.35■□□□□ 0.21
LINC00339-202ENST00000416769 NBPF7P0C2Y1 421 aaPredicted RBP16.34■□□□□ 0.21
LINC00339-202ENST00000416769 EN2P19622 333 aaPredicted RBP16.34■□□□□ 0.21
LINC00339-202ENST00000416769 IREB2P48200 963 aaKnown RBP16.34■□□□□ 0.21
LINC00339-202ENST00000416769 DZIP1LQ8IYY4 767 aaKnown RBP16.34■□□□□ 0.21
LINC00339-202ENST00000416769 PTPN22Q9Y2R2 807 aa16.34■□□□□ 0.21
LINC00339-202ENST00000416769 CHAF1AQ13111 956 aaPredicted RBP16.33■□□□□ 0.2
LINC00339-202ENST00000416769 VGLL4Q14135 290 aa16.33■□□□□ 0.2
LINC00339-202ENST00000416769 LRRC24Q50LG9 513 aa16.33■□□□□ 0.2
LINC00339-202ENST00000416769 ANKRD13AQ8IZ07 590 aa16.33■□□□□ 0.2
LINC00339-202ENST00000416769 PCDH10Q9P2E7 1040 aa16.33■□□□□ 0.2
LINC00339-202ENST00000416769 RBBP6Q7Z6E9 1792 aaKnown RBP16.33■□□□□ 0.2
LINC00339-202ENST00000416769 TESPA1A2RU30 521 aaPredicted RBP16.32■□□□□ 0.2
LINC00339-202ENST00000416769 ECM2O94769 699 aaPredicted RBP16.32■□□□□ 0.2
LINC00339-202ENST00000416769 MYCP01106 439 aaPredicted RBP16.32■□□□□ 0.2
LINC00339-202ENST00000416769 HIBADHP31937 336 aaKnown RBP16.32■□□□□ 0.2
LINC00339-202ENST00000416769 CRKP46108 304 aa16.32■□□□□ 0.2
LINC00339-202ENST00000416769 INHBEP58166 350 aa16.32■□□□□ 0.2
LINC00339-202ENST00000416769 WDR63Q8IWG1 891 aa16.32■□□□□ 0.2
LINC00339-202ENST00000416769 FAM43AQ8N2R8 423 aa16.32■□□□□ 0.2
LINC00339-202ENST00000416769 KLHDC4Q8TBB5 520 aa16.32■□□□□ 0.2
LINC00339-202ENST00000416769 C9orf78Q9NZ63 289 aaPredicted RBP16.32■□□□□ 0.2
LINC00339-202ENST00000416769 ANKRD44Q8N8A2 993 aa16.31■□□□□ 0.2
LINC00339-202ENST00000416769 OTUD5Q96G74 571 aa16.31■□□□□ 0.2
LINC00339-202ENST00000416769 ERO1AQ96HE7 468 aa16.31■□□□□ 0.2
LINC00339-202ENST00000416769 ARHGAP39Q9C0H5 1083 aa16.31■□□□□ 0.2
LINC00339-202ENST00000416769 BICC1Q9H694 974 aaKnown RBP16.31■□□□□ 0.2
LINC00339-202ENST00000416769 EFCC1Q9HA90 598 aa16.31■□□□□ 0.2
LINC00339-202ENST00000416769 SERPINA10Q9UK55 444 aa16.31■□□□□ 0.2
LINC00339-202ENST00000416769 RIPOR2Q9Y4F9 1068 aa16.31■□□□□ 0.2
LINC00339-202ENST00000416769 CCL15-CCL14A0A0B4J2E2 113 aa16.3■□□□□ 0.2
LINC00339-202ENST00000416769 SP3Q02447 781 aa16.3■□□□□ 0.2
LINC00339-202ENST00000416769 UBE4AQ14139 1066 aa16.3■□□□□ 0.2
LINC00339-202ENST00000416769 CCL15Q16663 113 aa16.3■□□□□ 0.2
LINC00339-202ENST00000416769 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.3■□□□□ 0.24e-7■■■■■ 38.1
LINC00339-202ENST00000416769 ARMC5Q96C12 935 aa16.3■□□□□ 0.2
LINC00339-202ENST00000416769 PTCH2Q9Y6C5 1203 aa16.3■□□□□ 0.2
LINC00339-202ENST00000416769 CEP290O15078 2479 aa16.3■□□□□ 0.2
LINC00339-202ENST00000416769 ALDH1L1O75891 902 aa16.29■□□□□ 0.2
LINC00339-202ENST00000416769 FBXO33Q7Z6M2 555 aa16.29■□□□□ 0.2
LINC00339-202ENST00000416769 SRCIN1Q9C0H9 1055 aa16.29■□□□□ 0.2
LINC00339-202ENST00000416769 SNCAIPQ9Y6H5 919 aa16.29■□□□□ 0.2
LINC00339-202ENST00000416769 BCAMP50895 628 aa16.28■□□□□ 0.2
LINC00339-202ENST00000416769 TAF1CQ15572 869 aaPredicted RBP16.28■□□□□ 0.2
LINC00339-202ENST00000416769 NCBP3Q53F19 620 aaKnown RBP16.28■□□□□ 0.2
LINC00339-202ENST00000416769 VGLL2Q8N8G2 317 aa16.28■□□□□ 0.2
LINC00339-202ENST00000416769 ZKSCAN4Q969J2 545 aaPredicted RBP16.28■□□□□ 0.2
LINC00339-202ENST00000416769 UNCXA6NJT0 531 aa16.27■□□□□ 0.2
LINC00339-202ENST00000416769 MAP3K9P80192 1104 aa16.27■□□□□ 0.2
LINC00339-202ENST00000416769 TNFAIP1Q13829 316 aa16.27■□□□□ 0.2
LINC00339-202ENST00000416769 HABP4Q5JVS0 413 aaKnown RBP16.27■□□□□ 0.2
LINC00339-202ENST00000416769 ZNF333Q96JL9 665 aa16.27■□□□□ 0.2
LINC00339-202ENST00000416769 UTYO14607 1347 aa16.26■□□□□ 0.19
LINC00339-202ENST00000416769 TRIOBPQ9H2D6 2365 aa16.26■□□□□ 0.19
LINC00339-202ENST00000416769 RABL6Q3YEC7 729 aaPredicted RBP16.26■□□□□ 0.19
LINC00339-202ENST00000416769 METTL24Q5JXM2 366 aa16.26■□□□□ 0.19
LINC00339-202ENST00000416769 OTUD7BQ6GQQ9 843 aa16.26■□□□□ 0.19
LINC00339-202ENST00000416769 SH3TC2Q8TF17 1288 aa16.26■□□□□ 0.19
LINC00339-202ENST00000416769 SPDYE5A6NIY4 337 aa16.25■□□□□ 0.19
LINC00339-202ENST00000416769 BTBD19C9JJ37 291 aa16.25■□□□□ 0.19
LINC00339-202ENST00000416769 CTGFP29279 349 aa16.25■□□□□ 0.19
LINC00339-202ENST00000416769 INTS3Q68E01 1043 aaKnown RBP16.25■□□□□ 0.19
LINC00339-202ENST00000416769 APOBEC3HQ6NTF7 200 aaKnown RBP16.25■□□□□ 0.19
LINC00339-202ENST00000416769 WRNIP1Q96S55 665 aa16.25■□□□□ 0.19
LINC00339-202ENST00000416769 MROH5Q6ZUA9 1318 aa16.24■□□□□ 0.19
LINC00339-202ENST00000416769 IRF6O14896 467 aa16.24■□□□□ 0.19
LINC00339-202ENST00000416769 INPP5BP32019 993 aa16.24■□□□□ 0.19
LINC00339-202ENST00000416769 MIGA2Q7L4E1 593 aa16.24■□□□□ 0.19
LINC00339-202ENST00000416769 VPS37DQ86XT2 251 aa16.24■□□□□ 0.19
LINC00339-202ENST00000416769 MRPL50Q8N5N7 158 aaKnown RBP16.24■□□□□ 0.19
LINC00339-202ENST00000416769 CSADQ9Y600 493 aa16.24■□□□□ 0.19
LINC00339-202ENST00000416769 GTF2A2P52657 109 aa16.23■□□□□ 0.19
LINC00339-202ENST00000416769 TEKT1Q969V4 418 aa16.23■□□□□ 0.19
LINC00339-202ENST00000416769 ZFYVE28Q9HCC9 887 aa16.23■□□□□ 0.19
LINC00339-202ENST00000416769 ZNF521Q96K83 1311 aa16.22■□□□□ 0.19
LINC00339-202ENST00000416769 MYH13Q9UKX3 1938 aa16.22■□□□□ 0.19
LINC00339-202ENST00000416769 FRAT2O75474 233 aaPredicted RBP16.22■□□□□ 0.19
LINC00339-202ENST00000416769 PDE8BO95263 885 aa16.22■□□□□ 0.19
LINC00339-202ENST00000416769 TNNI2P48788 182 aa16.22■□□□□ 0.19
LINC00339-202ENST00000416769 DIXDC1Q155Q3 683 aa16.22■□□□□ 0.19
LINC00339-202ENST00000416769 SLC9C1Q4G0N8 1177 aa16.22■□□□□ 0.19
LINC00339-202ENST00000416769 ZDHHC15Q96MV8 337 aa16.22■□□□□ 0.19
LINC00339-202ENST00000416769 SLURP2P0DP57 97 aa16.21■□□□□ 0.19
LINC00339-202ENST00000416769 FGFR2P21802 821 aa16.21■□□□□ 0.19
LINC00339-202ENST00000416769 RFX5P48382 616 aaPredicted RBP16.21■□□□□ 0.19
LINC00339-202ENST00000416769 NFIAQ12857 509 aa16.21■□□□□ 0.19
LINC00339-202ENST00000416769 USP44Q9H0E7 712 aa16.21■□□□□ 0.19
LINC00339-202ENST00000416769 CPA4Q9UI42 421 aa16.21■□□□□ 0.19
LINC00339-202ENST00000416769 TLR2O60603 784 aa16.2■□□□□ 0.18
LINC00339-202ENST00000416769 FXR1P51114 621 aaKnown RBP eCLIP16.2■□□□□ 0.18
LINC00339-202ENST00000416769 LACTBP83111 547 aaPredicted RBP16.2■□□□□ 0.18
LINC00339-202ENST00000416769 TCP10Q12799 353 aa16.2■□□□□ 0.18
LINC00339-202ENST00000416769 ERO1BQ86YB8 467 aa16.2■□□□□ 0.18
LINC00339-202ENST00000416769 ZFPM1Q8IX07 1006 aa16.2■□□□□ 0.18
LINC00339-202ENST00000416769 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.2■□□□□ 0.18
LINC00339-202ENST00000416769 SSH1Q8WYL5 1049 aa16.2■□□□□ 0.18
LINC00339-202ENST00000416769 AK9Q5TCS8 1911 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms