RNA–Protein interactions for RNA: ENST00000414978.5

MCF2-204, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,813 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-204ENST00000414978 LARP1BQ659C4 914 aaKnown RBP3.46□□□□□ -1.86
MCF2-204ENST00000414978 ALG1LQ6GMV1 187 aa3.46□□□□□ -1.86
MCF2-204ENST00000414978 KIAA0907Q7Z7F0 614 aaPredicted RBP3.46□□□□□ -1.86
MCF2-204ENST00000414978 ZNF654Q8IZM8 581 aa3.46□□□□□ -1.86
MCF2-204ENST00000414978 AFAP1Q8N556 730 aa3.46□□□□□ -1.86
MCF2-204ENST00000414978 CSRNP1Q96S65 589 aa3.46□□□□□ -1.86
MCF2-204ENST00000414978 PRR12Q9ULL5 1215 aa3.46□□□□□ -1.86
MCF2-204ENST00000414978 NINLQ9Y2I6 1382 aa3.46□□□□□ -1.86
MCF2-204ENST00000414978 MYOM2P54296 1465 aa3.45□□□□□ -1.86
MCF2-204ENST00000414978 NOS1P29475 1434 aa3.45□□□□□ -1.86
MCF2-204ENST00000414978 IL2RAP01589 272 aa3.45□□□□□ -1.86
MCF2-204ENST00000414978 SMTNP53814 917 aa3.45□□□□□ -1.86
MCF2-204ENST00000414978 ABTB2Q8N961 1025 aa3.45□□□□□ -1.86
MCF2-204ENST00000414978 CCDC74AQ96AQ1 378 aa3.45□□□□□ -1.86
MCF2-204ENST00000414978 TMEM2Q9UHN6 1383 aa3.45□□□□□ -1.86
MCF2-204ENST00000414978 PLEKHG1Q9ULL1 1385 aa3.45□□□□□ -1.86
MCF2-204ENST00000414978 SPAG9O60271 1321 aaKnown RBP3.45□□□□□ -1.86
MCF2-204ENST00000414978 CLSTN1O94985 981 aa3.45□□□□□ -1.86
MCF2-204ENST00000414978 NOS2P35228 1153 aa3.45□□□□□ -1.86
MCF2-204ENST00000414978 GYS2P54840 703 aa3.45□□□□□ -1.86
MCF2-204ENST00000414978 FOXC1Q12948 553 aa3.45□□□□□ -1.86
MCF2-204ENST00000414978 SLC27A3Q5K4L6 730 aa3.45□□□□□ -1.86
MCF2-204ENST00000414978 PRICKLE2Q7Z3G6 844 aa3.45□□□□□ -1.86
MCF2-204ENST00000414978 RASGRP4Q8TDF6 673 aa3.45□□□□□ -1.86
MCF2-204ENST00000414978 ZDHHC1Q8WTX9 485 aa3.45□□□□□ -1.86
MCF2-204ENST00000414978 UTP3Q9NQZ2 479 aaKnown RBP eCLIP3.45□□□□□ -1.86
MCF2-204ENST00000414978 COL4A3BPQ9Y5P4 624 aa3.45□□□□□ -1.86
MCF2-204ENST00000414978 PNPLA6Q8IY17 1366 aa3.45□□□□□ -1.86
MCF2-204ENST00000414978 CEP162Q5TB80 1403 aa3.45□□□□□ -1.86
MCF2-204ENST00000414978 ERBINQ96RT1 1412 aa3.45□□□□□ -1.86
MCF2-204ENST00000414978 METTL12A8MUP2 240 aa3.45□□□□□ -1.86
MCF2-204ENST00000414978 CPNE3O75131 537 aaKnown RBP3.45□□□□□ -1.86
MCF2-204ENST00000414978 ALDH1A1P00352 501 aa3.45□□□□□ -1.86
MCF2-204ENST00000414978 CNGA1P29973 690 aa3.45□□□□□ -1.86
MCF2-204ENST00000414978 CDC25BP30305 580 aa3.45□□□□□ -1.86
MCF2-204ENST00000414978 ERVK-9P63128 1117 aa3.45□□□□□ -1.86
MCF2-204ENST00000414978 RNF187Q5TA31 235 aaPredicted RBP3.45□□□□□ -1.86
MCF2-204ENST00000414978 RAB44Q7Z6P3 723 aaPredicted RBP3.45□□□□□ -1.86
MCF2-204ENST00000414978 CCDC116Q8IYX3 515 aa3.45□□□□□ -1.86
MCF2-204ENST00000414978 JARID2Q92833 1246 aaPredicted RBP3.45□□□□□ -1.86
MCF2-204ENST00000414978 BCO2Q9BYV7 579 aa3.45□□□□□ -1.86
MCF2-204ENST00000414978 AK5Q9Y6K8 562 aa3.45□□□□□ -1.86
MCF2-204ENST00000414978 EREGO14944 169 aa3.44□□□□□ -1.86
MCF2-204ENST00000414978 PHACTR2O75167 634 aa3.44□□□□□ -1.86
MCF2-204ENST00000414978 TNFRSF21O75509 655 aa3.44□□□□□ -1.86
MCF2-204ENST00000414978 FAM163BP0C2L3 166 aa3.44□□□□□ -1.86
MCF2-204ENST00000414978 XRCC5P13010 732 aaKnown RBP3.44□□□□□ -1.86
MCF2-204ENST00000414978 LRRC69Q6ZNQ3 347 aa3.44□□□□□ -1.86
MCF2-204ENST00000414978 TMEM63CQ9P1W3 806 aa3.44□□□□□ -1.86
MCF2-204ENST00000414978 PARD3Q8TEW0 1356 aa3.44□□□□□ -1.86
MCF2-204ENST00000414978 EML1O00423 815 aa3.44□□□□□ -1.86
MCF2-204ENST00000414978 TAF1CQ15572 869 aaPredicted RBP3.44□□□□□ -1.86
MCF2-204ENST00000414978 SMAD5Q99717 465 aaKnown RBP3.44□□□□□ -1.86
MCF2-204ENST00000414978 IER2Q9BTL4 223 aa3.44□□□□□ -1.86
MCF2-204ENST00000414978 GINM1Q9NU53 330 aa3.44□□□□□ -1.86
MCF2-204ENST00000414978 TYW1Q9NV66 732 aaKnown RBP3.44□□□□□ -1.86
MCF2-204ENST00000414978 MST1RQ04912 1400 aa3.44□□□□□ -1.86
MCF2-204ENST00000414978 CDC42BPGQ6DT37 1551 aa3.44□□□□□ -1.86
MCF2-204ENST00000414978 SHANK3Q9BYB0 1731 aa3.44□□□□□ -1.86
MCF2-204ENST00000414978 PDGFRBP09619 1106 aa3.44□□□□□ -1.86
MCF2-204ENST00000414978 ACPPP15309 386 aa3.44□□□□□ -1.86
MCF2-204ENST00000414978 TBC1D8BQ0IIM8 1120 aa3.44□□□□□ -1.86
MCF2-204ENST00000414978 TRIP4Q15650 581 aaPredicted RBP3.44□□□□□ -1.86
MCF2-204ENST00000414978 MAP9Q49MG5 647 aa3.44□□□□□ -1.86
MCF2-204ENST00000414978 PDZRN4Q6ZMN7 1036 aaPredicted RBP3.44□□□□□ -1.86
MCF2-204ENST00000414978 C11orf96Q7Z7L8 435 aa3.44□□□□□ -1.86
MCF2-204ENST00000414978 CELF2-AS1Q8N7Q2 184 aa3.44□□□□□ -1.86
MCF2-204ENST00000414978 JDP2Q8WYK2 163 aa3.44□□□□□ -1.86
MCF2-204ENST00000414978 MKL1Q969V6 931 aa3.44□□□□□ -1.86
MCF2-204ENST00000414978 ITPKCQ96DU7 683 aa3.44□□□□□ -1.86
MCF2-204ENST00000414978 ZFAND3Q9H8U3 227 aa3.44□□□□□ -1.86
MCF2-204ENST00000414978 BCS1LQ9Y276 419 aa3.44□□□□□ -1.86
MCF2-204ENST00000414978 CFAP69A5D8W1 941 aa3.43□□□□□ -1.86
MCF2-204ENST00000414978 RHOQP17081 205 aa3.43□□□□□ -1.86
MCF2-204ENST00000414978 GRM5P41594 1212 aa3.43□□□□□ -1.86
MCF2-204ENST00000414978 IDH3AP50213 366 aa3.43□□□□□ -1.86
MCF2-204ENST00000414978 ERMP1Q7Z2K6 904 aa3.43□□□□□ -1.86
MCF2-204ENST00000414978 ZNF295-AS1Q8N0V1 137 aa3.43□□□□□ -1.86
MCF2-204ENST00000414978 ZNF687Q8N1G0 1237 aa3.43□□□□□ -1.86
MCF2-204ENST00000414978 RHPN1Q8TCX5 695 aa3.43□□□□□ -1.86
MCF2-204ENST00000414978 NLRP3Q96P20 1036 aa3.43□□□□□ -1.86
MCF2-204ENST00000414978 DNAJC7Q99615 494 aa3.43□□□□□ -1.86
MCF2-204ENST00000414978 NRBP1Q9UHY1 535 aa3.43□□□□□ -1.86
MCF2-204ENST00000414978 SLIT2O94813 1529 aa3.43□□□□□ -1.86
MCF2-204ENST00000414978 CYP2E1P05181 493 aaPredicted RBP3.43□□□□□ -1.86
MCF2-204ENST00000414978 SRGNP10124 158 aa3.43□□□□□ -1.86
MCF2-204ENST00000414978 BDNFP23560 247 aa3.43□□□□□ -1.86
MCF2-204ENST00000414978 APOBRQ0VD83 1088 aa3.43□□□□□ -1.86
MCF2-204ENST00000414978 SEZ6Q53EL9 994 aa3.43□□□□□ -1.86
MCF2-204ENST00000414978 RC3H1Q5TC82 1133 aaKnown RBP3.43□□□□□ -1.86
MCF2-204ENST00000414978 KIAA0825Q8IV33 1275 aa3.43□□□□□ -1.86
MCF2-204ENST00000414978 GJD3Q8N144 294 aa3.43□□□□□ -1.86
MCF2-204ENST00000414978 GOLM1Q8NBJ4 401 aa3.43□□□□□ -1.86
MCF2-204ENST00000414978 SH3TC2Q8TF17 1288 aa3.43□□□□□ -1.86
MCF2-204ENST00000414978 COL14A1Q05707 1796 aaKnown RBP3.43□□□□□ -1.86
MCF2-204ENST00000414978 CAMTA1Q9Y6Y1 1673 aa3.43□□□□□ -1.86
MCF2-204ENST00000414978 RNF223E7ERA6 249 aa3.43□□□□□ -1.86
MCF2-204ENST00000414978 LILRA1O75019 489 aa3.43□□□□□ -1.86
MCF2-204ENST00000414978 CRKP46108 304 aa3.43□□□□□ -1.86
MCF2-204ENST00000414978 CDKN1CP49918 316 aaPredicted RBP3.43□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms