RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 RPAP2Q8IXW5 612 aaPredicted RBP14.89□□□□□ -0.03
CCDC88A-204ENST00000413716 SERPINB6P35237 376 aa14.89□□□□□ -0.03
CCDC88A-204ENST00000413716 ATP2B3Q16720 1220 aa14.89□□□□□ -0.03
CCDC88A-204ENST00000413716 CASC4Q6P4E1 433 aa14.89□□□□□ -0.03
CCDC88A-204ENST00000413716 STAC3Q96MF2 364 aa14.89□□□□□ -0.03
CCDC88A-204ENST00000413716 RBSNQ9H1K0 784 aa14.89□□□□□ -0.03
CCDC88A-204ENST00000413716 VAT1LQ9HCJ6 419 aa14.89□□□□□ -0.03
CCDC88A-204ENST00000413716 RIPOR2Q9Y4F9 1068 aa14.89□□□□□ -0.03
CCDC88A-204ENST00000413716 RPGRIP1Q96KN7 1286 aa14.88□□□□□ -0.03
CCDC88A-204ENST00000413716 TEKT2Q9UIF3 430 aa14.88□□□□□ -0.03
CCDC88A-204ENST00000413716 SCINQ9Y6U3 715 aa14.88□□□□□ -0.03
CCDC88A-204ENST00000413716 SOGA1O94964 1423 aa14.88□□□□□ -0.03
CCDC88A-204ENST00000413716 TSPY2A6NKD2 308 aa14.88□□□□□ -0.03
CCDC88A-204ENST00000413716 UTP14CQ5TAP6 766 aaKnown RBP14.88□□□□□ -0.03
CCDC88A-204ENST00000413716 ARMC9Q7Z3E5 817 aa14.88□□□□□ -0.03
CCDC88A-204ENST00000413716 MRRFQ96E11 262 aaKnown RBP14.88□□□□□ -0.03
CCDC88A-204ENST00000413716 PALMDQ9NP74 551 aa14.88□□□□□ -0.03
CCDC88A-204ENST00000413716 ESRRGP62508 458 aa14.88□□□□□ -0.03
CCDC88A-204ENST00000413716 EVI5LQ96CN4 794 aa14.88□□□□□ -0.03
CCDC88A-204ENST00000413716 CCDC88BA6NC98 1476 aa14.88□□□□□ -0.03
CCDC88A-204ENST00000413716 LIN9Q5TKA1 542 aa14.88□□□□□ -0.03
CCDC88A-204ENST00000413716 RNF34Q969K3 372 aa14.88□□□□□ -0.03
CCDC88A-204ENST00000413716 WDR44Q5JSH3 913 aa14.88□□□□□ -0.03
CCDC88A-204ENST00000413716 TROVE2P10155 538 aaKnown RBP eCLIP14.88□□□□□ -0.03
CCDC88A-204ENST00000413716 DDX54Q8TDD1 881 aaKnown RBP14.88□□□□□ -0.03
CCDC88A-204ENST00000413716 USP16Q9Y5T5 823 aa14.88□□□□□ -0.03
CCDC88A-204ENST00000413716 SETD1BQ9UPS6 1966 aaKnown RBP14.88□□□□□ -0.03
CCDC88A-204ENST00000413716 E9PMD0 336 aa14.88□□□□□ -0.03
CCDC88A-204ENST00000413716 HS2ST1Q7LGA3 356 aa14.88□□□□□ -0.03
CCDC88A-204ENST00000413716 CCDC85AQ96PX6 553 aaPredicted RBP14.88□□□□□ -0.03
CCDC88A-204ENST00000413716 TACO1Q9BSH4 297 aaKnown RBP14.88□□□□□ -0.03
CCDC88A-204ENST00000413716 CABP5Q9NP86 173 aa14.88□□□□□ -0.03
CCDC88A-204ENST00000413716 BAIAP2L1Q9UHR4 511 aa14.88□□□□□ -0.03
CCDC88A-204ENST00000413716 GDPD2Q9HCC8 539 aa14.87□□□□□ -0.03
CCDC88A-204ENST00000413716 VWA3BQ502W6 1294 aa14.87□□□□□ -0.03
CCDC88A-204ENST00000413716 HS1BP3Q53T59 392 aa14.87□□□□□ -0.03
CCDC88A-204ENST00000413716 JADE1Q6IE81 842 aa14.87□□□□□ -0.03
CCDC88A-204ENST00000413716 NSMCE1Q8WV22 266 aa14.87□□□□□ -0.03
CCDC88A-204ENST00000413716 IWS1Q96ST2 819 aa14.87□□□□□ -0.03
CCDC88A-204ENST00000413716 NCOA7Q8NI08 942 aa14.87□□□□□ -0.03
CCDC88A-204ENST00000413716 TFIP11Q9UBB9 837 aaKnown RBP14.87□□□□□ -0.03
CCDC88A-204ENST00000413716 EXOC6BQ9Y2D4 811 aa14.87□□□□□ -0.03
CCDC88A-204ENST00000413716 GOLGA8QA0A0J9YX86 632 aa14.87□□□□□ -0.03
CCDC88A-204ENST00000413716 GOLGA8OA6NCC3 632 aa14.87□□□□□ -0.03
CCDC88A-204ENST00000413716 GOLGA8NF8WBI6 632 aa14.87□□□□□ -0.03
CCDC88A-204ENST00000413716 VGLL3A8MV65 326 aa14.87□□□□□ -0.03
CCDC88A-204ENST00000413716 KARSQ15046 597 aaKnown RBP14.87□□□□□ -0.03
CCDC88A-204ENST00000413716 RASIP1Q5U651 963 aa14.87□□□□□ -0.03
CCDC88A-204ENST00000413716 NUCKS1Q9H1E3 243 aaKnown RBP14.87□□□□□ -0.03
CCDC88A-204ENST00000413716 ATP6V0A1Q93050 837 aa14.87□□□□□ -0.03
CCDC88A-204ENST00000413716 SATB2Q9UPW6 733 aa14.87□□□□□ -0.03
CCDC88A-204ENST00000413716 PYGLP06737 847 aa14.87□□□□□ -0.03
CCDC88A-204ENST00000413716 ANKRD20A4Q4UJ75 823 aa14.87□□□□□ -0.03
CCDC88A-204ENST00000413716 ANKRD20A8PQ5CZ79 823 aa14.87□□□□□ -0.03
CCDC88A-204ENST00000413716 ANKRD20A2Q5SQ80 823 aa14.87□□□□□ -0.03
CCDC88A-204ENST00000413716 ANKRD20A1Q5TYW2 823 aa14.87□□□□□ -0.03
CCDC88A-204ENST00000413716 CDCA7LQ96GN5 454 aa14.87□□□□□ -0.03
CCDC88A-204ENST00000413716 MAFGO15525 162 aa14.86□□□□□ -0.03
CCDC88A-204ENST00000413716 LMNAP02545 664 aaKnown RBP14.86□□□□□ -0.03
CCDC88A-204ENST00000413716 ABTB1Q969K4 478 aaPredicted RBP14.86□□□□□ -0.03
CCDC88A-204ENST00000413716 NKTRP30414 1462 aaKnown RBP14.86□□□□□ -0.03
CCDC88A-204ENST00000413716 LRGUKQ96M69 825 aa14.86□□□□□ -0.03
CCDC88A-204ENST00000413716 CLSTN2Q9H4D0 955 aa14.86□□□□□ -0.03
CCDC88A-204ENST00000413716 ARHGEF9O43307 516 aa14.86□□□□□ -0.03
CCDC88A-204ENST00000413716 LMNB2Q03252 620 aa14.86□□□□□ -0.03
CCDC88A-204ENST00000413716 ESCO1Q5FWF5 840 aa14.86□□□□□ -0.03
CCDC88A-204ENST00000413716 NUDCD3Q8IVD9 361 aa14.86□□□□□ -0.03
CCDC88A-204ENST00000413716 ZBTB9Q96C00 473 aa14.86□□□□□ -0.03
CCDC88A-204ENST00000413716 TBC1D8O95759 1140 aa14.86□□□□□ -0.03
CCDC88A-204ENST00000413716 ZBTB41Q5SVQ8 909 aa14.86□□□□□ -0.03
CCDC88A-204ENST00000413716 FAM71BQ8TC56 605 aa14.86□□□□□ -0.03
CCDC88A-204ENST00000413716 NAPGQ99747 312 aaPredicted RBP14.86□□□□□ -0.03
CCDC88A-204ENST00000413716 CALM1P0DP23 149 aa14.86□□□□□ -0.03
CCDC88A-204ENST00000413716 CALM2P0DP24 149 aa14.86□□□□□ -0.03
CCDC88A-204ENST00000413716 CALM3P0DP25 149 aa14.86□□□□□ -0.03
CCDC88A-204ENST00000413716 P3H4Q92791 437 aa14.86□□□□□ -0.03
CCDC88A-204ENST00000413716 EVCP57679 992 aa14.86□□□□□ -0.03
CCDC88A-204ENST00000413716 BAG2O95816 211 aa14.86□□□□□ -0.03
CCDC88A-204ENST00000413716 NXNQ6DKJ4 435 aa14.86□□□□□ -0.03
CCDC88A-204ENST00000413716 ORC3Q9UBD5 711 aaPredicted RBP14.86□□□□□ -0.03
CCDC88A-204ENST00000413716 MRPS27Q92552 414 aaKnown RBP14.86□□□□□ -0.03
CCDC88A-204ENST00000413716 CCDC68Q9H2F9 335 aa14.86□□□□□ -0.03
CCDC88A-204ENST00000413716 GABPB1Q06547 395 aaPredicted RBP14.85□□□□□ -0.03
CCDC88A-204ENST00000413716 FHOD3Q2V2M9 1422 aa14.85□□□□□ -0.03
CCDC88A-204ENST00000413716 GFAPP14136 432 aa14.85□□□□□ -0.03
CCDC88A-204ENST00000413716 KRT15P19012 456 aa14.85□□□□□ -0.03
CCDC88A-204ENST00000413716 PPP2R5DQ14738 602 aa14.85□□□□□ -0.03
CCDC88A-204ENST00000413716 EPB41P11171 864 aaKnown RBP14.85□□□□□ -0.03
CCDC88A-204ENST00000413716 POTEB3A0JP26 581 aa14.85□□□□□ -0.03
CCDC88A-204ENST00000413716 RNF40O75150 1001 aa14.85□□□□□ -0.03
CCDC88A-204ENST00000413716 PCYT1AP49585 367 aa14.85□□□□□ -0.03
CCDC88A-204ENST00000413716 DCAF17Q5H9S7 520 aaPredicted RBP14.85□□□□□ -0.03
CCDC88A-204ENST00000413716 IFIT1BQ5T764 474 aaKnown RBP14.85□□□□□ -0.03
CCDC88A-204ENST00000413716 POTEBQ6S5H4 581 aa14.85□□□□□ -0.03
CCDC88A-204ENST00000413716 HEATR3Q7Z4Q2 680 aa14.85□□□□□ -0.03
CCDC88A-204ENST00000413716 CEP19Q96LK0 163 aa14.85□□□□□ -0.03
CCDC88A-204ENST00000413716 KLHL14Q9P2G3 628 aa14.85□□□□□ -0.03
CCDC88A-204ENST00000413716 SNCBQ16143 134 aa14.85□□□□□ -0.03
CCDC88A-204ENST00000413716 SULT6B1Q6IMI4 303 aa14.85□□□□□ -0.03
CCDC88A-204ENST00000413716 NLRP7Q8WX94 980 aa14.85□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 99.8 ms