RNA–Protein interactions for RNA: ENST00000413582.6

RFFL-203, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 5 BASIC

Gene RFFL, Length 1,217 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-203ENST00000413582 GTF2A2P52657 109 aa12.19□□□□□ -0.46
RFFL-203ENST00000413582 FOXO4P98177 505 aa12.19□□□□□ -0.46
RFFL-203ENST00000413582 IFIT5Q13325 482 aaKnown RBP12.19□□□□□ -0.46
RFFL-203ENST00000413582 ARHGEF6Q15052 776 aa12.19□□□□□ -0.46
RFFL-203ENST00000413582 SLC4A8Q2Y0W8 1093 aa12.19□□□□□ -0.46
RFFL-203ENST00000413582 TWISTNBQ3B726 338 aaPredicted RBP12.19□□□□□ -0.46
RFFL-203ENST00000413582 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.19□□□□□ -0.46
RFFL-203ENST00000413582 ARHGAP39Q9C0H5 1083 aa12.19□□□□□ -0.46
RFFL-203ENST00000413582 MYCP01106 439 aaPredicted RBP12.18□□□□□ -0.46
RFFL-203ENST00000413582 FKBP5Q13451 457 aaPredicted RBP12.18□□□□□ -0.46
RFFL-203ENST00000413582 MFSD14BQ5SR56 506 aa12.18□□□□□ -0.46
RFFL-203ENST00000413582 SH3TC2Q8TF17 1288 aa12.18□□□□□ -0.46
RFFL-203ENST00000413582 TMEM39BQ9GZU3 492 aa12.18□□□□□ -0.46
RFFL-203ENST00000413582 TDRD3Q9H7E2 651 aaKnown RBP12.18□□□□□ -0.46
RFFL-203ENST00000413582 SERPINA10Q9UK55 444 aa12.18□□□□□ -0.46
RFFL-203ENST00000413582 TTF2Q9UNY4 1162 aaKnown RBP12.18□□□□□ -0.46
RFFL-203ENST00000413582 SPDYE5A6NIY4 337 aa12.17□□□□□ -0.46
RFFL-203ENST00000413582 TLR2O60603 784 aa12.17□□□□□ -0.46
RFFL-203ENST00000413582 MAP3K9P80192 1104 aa12.17□□□□□ -0.46
RFFL-203ENST00000413582 LACTBP83111 547 aaPredicted RBP12.17□□□□□ -0.46
RFFL-203ENST00000413582 DZIP1LQ8IYY4 767 aaKnown RBP12.17□□□□□ -0.46
RFFL-203ENST00000413582 TDRD7Q8NHU6 1098 aaKnown RBP12.17□□□□□ -0.46
RFFL-203ENST00000413582 SHISA4Q96DD7 197 aa12.17□□□□□ -0.46
RFFL-203ENST00000413582 PRKRIP1Q9H875 184 aaPredicted RBP12.17□□□□□ -0.46
RFFL-203ENST00000413582 RTN4Q9NQC3 1192 aaKnown RBP12.17□□□□□ -0.46
RFFL-203ENST00000413582 RNF216Q9NWF9 866 aaPredicted RBP12.17□□□□□ -0.46
RFFL-203ENST00000413582 CHMP3Q9Y3E7 222 aa12.17□□□□□ -0.46
RFFL-203ENST00000413582 CSADQ9Y600 493 aa12.17□□□□□ -0.46
RFFL-203ENST00000413582 TCP10L2B9ZVM9 353 aa12.16□□□□□ -0.46
RFFL-203ENST00000413582 EPHA10Q5JZY3 1008 aa12.16□□□□□ -0.46
RFFL-203ENST00000413582 CHRDL2Q6WN34 429 aa12.16□□□□□ -0.46
RFFL-203ENST00000413582 ZCCHC17Q9NP64 241 aaKnown RBP12.16□□□□□ -0.46
RFFL-203ENST00000413582 SNCAIPQ9Y6H5 919 aa12.16□□□□□ -0.46
RFFL-203ENST00000413582 BTBD19C9JJ37 291 aa12.15□□□□□ -0.46
RFFL-203ENST00000413582 CRKP46108 304 aa12.15□□□□□ -0.46
RFFL-203ENST00000413582 GYG1P46976 350 aa12.15□□□□□ -0.46
RFFL-203ENST00000413582 LMBR1LQ6UX01 489 aa12.15□□□□□ -0.46
RFFL-203ENST00000413582 LDHAL6AQ6ZMR3 332 aa12.15□□□□□ -0.46
RFFL-203ENST00000413582 ZNF594Q96JF6 807 aaPredicted RBP12.15□□□□□ -0.46
RFFL-203ENST00000413582 CUL9Q8IWT3 2517 aa12.15□□□□□ -0.46
RFFL-203ENST00000413582 PLIN1O60240 522 aa12.14□□□□□ -0.47
RFFL-203ENST00000413582 GNRH1P01148 92 aa12.14□□□□□ -0.47
RFFL-203ENST00000413582 CETPP11597 493 aa12.14□□□□□ -0.47
RFFL-203ENST00000413582 TNNI2P48788 182 aa12.14□□□□□ -0.47
RFFL-203ENST00000413582 KIF22Q14807 665 aa12.14□□□□□ -0.47
RFFL-203ENST00000413582 GRIK5Q16478 980 aa12.14□□□□□ -0.47
RFFL-203ENST00000413582 CCDC27Q2M243 656 aa12.14□□□□□ -0.47
RFFL-203ENST00000413582 BEND3Q5T5X7 828 aa12.14□□□□□ -0.47
RFFL-203ENST00000413582 ERO1BQ86YB8 467 aa12.14□□□□□ -0.47
RFFL-203ENST00000413582 WWC1Q8IX03 1113 aa12.14□□□□□ -0.47
RFFL-203ENST00000413582 FAM84BQ96KN1 310 aaPredicted RBP12.14□□□□□ -0.47
RFFL-203ENST00000413582 CNNM1Q9NRU3 951 aa12.14□□□□□ -0.47
RFFL-203ENST00000413582 RBM27Q9P2N5 1060 aaKnown RBP12.14□□□□□ -0.47
RFFL-203ENST00000413582 IL16Q14005 1332 aa12.13□□□□□ -0.47
RFFL-203ENST00000413582 F6X3S4 739 aa12.13□□□□□ -0.47
RFFL-203ENST00000413582 IRF6O14896 467 aa12.13□□□□□ -0.47
RFFL-203ENST00000413582 WDHD1O75717 1129 aaPredicted RBP12.13□□□□□ -0.47
RFFL-203ENST00000413582 CTGFP29279 349 aa12.13□□□□□ -0.47
RFFL-203ENST00000413582 HIBADHP31937 336 aaKnown RBP12.13□□□□□ -0.47
RFFL-203ENST00000413582 CACNB3P54284 484 aa12.13□□□□□ -0.47
RFFL-203ENST00000413582 PRMT2P55345 433 aa12.13□□□□□ -0.47
RFFL-203ENST00000413582 PPIL2Q13356 520 aa12.13□□□□□ -0.47
RFFL-203ENST00000413582 SNAPC2Q13487 334 aa12.13□□□□□ -0.47
RFFL-203ENST00000413582 UBE4AQ14139 1066 aa12.13□□□□□ -0.47
RFFL-203ENST00000413582 MTFR1Q15390 333 aa12.13□□□□□ -0.47
RFFL-203ENST00000413582 CCDC57Q2TAC2 916 aa12.13□□□□□ -0.47
RFFL-203ENST00000413582 TAF7LQ5H9L4 462 aa12.13□□□□□ -0.47
RFFL-203ENST00000413582 UBE2Q1Q7Z7E8 422 aa12.13□□□□□ -0.47
RFFL-203ENST00000413582 WRNIP1Q96S55 665 aa12.13□□□□□ -0.47
RFFL-203ENST00000413582 RPAP1Q9BWH6 1393 aaPredicted RBP12.13□□□□□ -0.47
RFFL-203ENST00000413582 ADGRA2Q96PE1 1338 aa12.12□□□□□ -0.47
RFFL-203ENST00000413582 FANCIQ9NVI1 1328 aa12.12□□□□□ -0.47
RFFL-203ENST00000413582 MGAMO43451 1857 aa12.12□□□□□ -0.47
RFFL-203ENST00000413582 LAMA3Q16787 3333 aa12.12□□□□□ -0.47
RFFL-203ENST00000413582 GRM8O00222 908 aa12.12□□□□□ -0.47
RFFL-203ENST00000413582 C17orf99Q6UX52 265 aa12.12□□□□□ -0.47
RFFL-203ENST00000413582 ZKSCAN4Q969J2 545 aaPredicted RBP12.12□□□□□ -0.47
RFFL-203ENST00000413582 TRIM47Q96LD4 638 aa12.12□□□□□ -0.47
RFFL-203ENST00000413582 PRO3102Q9H379 93 aa12.12□□□□□ -0.47
RFFL-203ENST00000413582 SRRDQ9UH36 339 aa12.12□□□□□ -0.47
RFFL-203ENST00000413582 HDLBPQ00341 1268 aaKnown RBP12.11□□□□□ -0.47
RFFL-203ENST00000413582 CPA4Q9UI42 421 aa12.11□□□□□ -0.47
RFFL-203ENST00000413582 MYH13Q9UKX3 1938 aa12.11□□□□□ -0.47
RFFL-203ENST00000413582 COL6A3P12111 3177 aa12.11□□□□□ -0.47
RFFL-203ENST00000413582 VAMP4O75379 141 aa12.1□□□□□ -0.47
RFFL-203ENST00000413582 ECM2O94769 699 aaPredicted RBP12.1□□□□□ -0.47
RFFL-203ENST00000413582 OSBPP22059 807 aa12.1□□□□□ -0.47
RFFL-203ENST00000413582 GRK4P32298 578 aa12.1□□□□□ -0.47
RFFL-203ENST00000413582 PSMC4P43686 418 aa12.1□□□□□ -0.47
RFFL-203ENST00000413582 GJA8P48165 433 aa12.1□□□□□ -0.47
RFFL-203ENST00000413582 FBXO33Q7Z6M2 555 aa12.1□□□□□ -0.47
RFFL-203ENST00000413582 FAM83AQ86UY5 434 aa12.1□□□□□ -0.47
RFFL-203ENST00000413582 NKX2-3Q8TAU0 364 aa12.1□□□□□ -0.47
RFFL-203ENST00000413582 TBC1D22AQ8WUA7 517 aa12.1□□□□□ -0.47
RFFL-203ENST00000413582 DPF3Q92784 378 aa12.1□□□□□ -0.47
RFFL-203ENST00000413582 TEKT1Q969V4 418 aa12.1□□□□□ -0.47
RFFL-203ENST00000413582 ZDHHC15Q96MV8 337 aa12.1□□□□□ -0.47
RFFL-203ENST00000413582 PUS3Q9BZE2 481 aaKnown RBP12.1□□□□□ -0.47
RFFL-203ENST00000413582 IQSEC3Q9UPP2 1182 aaPredicted RBP12.1□□□□□ -0.47
RFFL-203ENST00000413582 RIPOR2Q9Y4F9 1068 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms