RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 TRPM4Q8TD43 1214 aa9.37□□□□□ -0.91
USP40-202ENST00000409945 OSMRQ99650 979 aa9.37□□□□□ -0.91
USP40-202ENST00000409945 SUV39H2Q9H5I1 410 aa9.37□□□□□ -0.91
USP40-202ENST00000409945 PCDHGB7Q9Y5F8 929 aa9.37□□□□□ -0.91
USP40-202ENST00000409945 DUOX2Q9NRD8 1548 aa9.37□□□□□ -0.91
USP40-202ENST00000409945 DAPK1P53355 1430 aa9.37□□□□□ -0.91
USP40-202ENST00000409945 SCAMP3O14828 347 aaKnown RBP9.37□□□□□ -0.91
USP40-202ENST00000409945 BMP4P12644 408 aa9.37□□□□□ -0.91
USP40-202ENST00000409945 CEBPAP49715 358 aaPredicted RBP9.37□□□□□ -0.91
USP40-202ENST00000409945 KIAA0319Q5VV43 1072 aa9.37□□□□□ -0.91
USP40-202ENST00000409945 TRERF1Q96PN7 1200 aa9.37□□□□□ -0.91
USP40-202ENST00000409945 TRIM56Q9BRZ2 755 aaKnown RBP9.37□□□□□ -0.91
USP40-202ENST00000409945 EHD4Q9H223 541 aa9.37□□□□□ -0.91
USP40-202ENST00000409945 RASSF4Q9H2L5 321 aa9.37□□□□□ -0.91
USP40-202ENST00000409945 PRR12Q9ULL5 1215 aa9.37□□□□□ -0.91
USP40-202ENST00000409945 DNMT1P26358 1616 aaKnown RBP9.36□□□□□ -0.91
USP40-202ENST00000409945 PREX1Q8TCU6 1659 aa9.36□□□□□ -0.91
USP40-202ENST00000409945 ZMYM3Q14202 1370 aa9.36□□□□□ -0.91
USP40-202ENST00000409945 KIF15Q9NS87 1388 aa9.36□□□□□ -0.91
USP40-202ENST00000409945 SPRED3Q2MJR0 410 aa9.36□□□□□ -0.91
USP40-202ENST00000409945 ZNF394Q53GI3 561 aa9.36□□□□□ -0.91
USP40-202ENST00000409945 FCHSD1Q86WN1 690 aa9.36□□□□□ -0.91
USP40-202ENST00000409945 CROCC2H7BZ55 1655 aa9.36□□□□□ -0.91
USP40-202ENST00000409945 EIF2AK4Q9P2K8 1649 aaKnown RBP9.35□□□□□ -0.91
USP40-202ENST00000409945 KANK1Q14678 1352 aa9.35□□□□□ -0.91
USP40-202ENST00000409945 C3P01024 1663 aa9.35□□□□□ -0.91
USP40-202ENST00000409945 CLTCQ00610 1675 aaKnown RBP9.35□□□□□ -0.91
USP40-202ENST00000409945 H3BM21 787 aa9.35□□□□□ -0.91
USP40-202ENST00000409945 HOXD8P13378 290 aaPredicted RBP9.35□□□□□ -0.91
USP40-202ENST00000409945 EDN3P14138 238 aa9.35□□□□□ -0.91
USP40-202ENST00000409945 MX2P20592 715 aa9.35□□□□□ -0.91
USP40-202ENST00000409945 MAP3K10Q02779 954 aa9.35□□□□□ -0.91
USP40-202ENST00000409945 MDFIQ99750 246 aa9.35□□□□□ -0.91
USP40-202ENST00000409945 RRP7BPQ9NSQ0 103 aa9.35□□□□□ -0.91
USP40-202ENST00000409945 ABCC5O15440 1437 aa9.35□□□□□ -0.91
USP40-202ENST00000409945 NPATQ14207 1427 aa9.35□□□□□ -0.91
USP40-202ENST00000409945 FCGRTP55899 365 aa9.35□□□□□ -0.91
USP40-202ENST00000409945 GPLD1P80108 840 aa9.35□□□□□ -0.91
USP40-202ENST00000409945 C1orf229Q6ZS94 237 aaPredicted RBP9.35□□□□□ -0.91
USP40-202ENST00000409945 ERBINQ96RT1 1412 aa9.35□□□□□ -0.91
USP40-202ENST00000409945 LIN7BQ9HAP6 207 aa9.35□□□□□ -0.91
USP40-202ENST00000409945 COPRSQ9NQ92 184 aa9.35□□□□□ -0.91
USP40-202ENST00000409945 PHF24Q9UPV7 400 aa9.35□□□□□ -0.91
USP40-202ENST00000409945 KDM5DQ9BY66 1539 aa9.34□□□□□ -0.91
USP40-202ENST00000409945 NEURL1BA8MQ27 555 aa9.34□□□□□ -0.91
USP40-202ENST00000409945 NRLP54845 237 aa9.34□□□□□ -0.91
USP40-202ENST00000409945 CCNJLQ8IV13 435 aa9.34□□□□□ -0.91
USP40-202ENST00000409945 UBE2OQ9C0C9 1292 aaKnown RBP9.34□□□□□ -0.91
USP40-202ENST00000409945 FAM8A1Q9UBU6 413 aa9.34□□□□□ -0.91
USP40-202ENST00000409945 LMTK3Q96Q04 1460 aa9.34□□□□□ -0.91
USP40-202ENST00000409945 LOC102724428A0A0B4J2F2 783 aa9.33□□□□□ -0.92
USP40-202ENST00000409945 CPB1P15086 417 aa9.33□□□□□ -0.92
USP40-202ENST00000409945 SIK1P57059 783 aa9.33□□□□□ -0.92
USP40-202ENST00000409945 RACK1P63244 317 aaKnown RBP9.33□□□□□ -0.92
USP40-202ENST00000409945 HYAL2Q12891 473 aa9.33□□□□□ -0.92
USP40-202ENST00000409945 PMEPA1Q969W9 287 aa9.33□□□□□ -0.92
USP40-202ENST00000409945 COL25A1Q9BXS0 654 aaPredicted RBP9.33□□□□□ -0.92
USP40-202ENST00000409945 TNNI2P48788 182 aa9.33□□□□□ -0.92
USP40-202ENST00000409945 FGD1P98174 961 aa9.33□□□□□ -0.92
USP40-202ENST00000409945 POP1Q99575 1024 aaKnown RBP9.33□□□□□ -0.92
USP40-202ENST00000409945 USP31Q70CQ4 1352 aa9.32□□□□□ -0.92
USP40-202ENST00000409945 ZC3H13Q5T200 1668 aaKnown RBP9.32□□□□□ -0.92
USP40-202ENST00000409945 ZNF76P36508 570 aa9.32□□□□□ -0.92
USP40-202ENST00000409945 PERM1Q5SV97 790 aa9.32□□□□□ -0.92
USP40-202ENST00000409945 FOXR1Q6PIV2 292 aa9.32□□□□□ -0.92
USP40-202ENST00000409945 OXCT2Q9BYC2 517 aaPredicted RBP9.32□□□□□ -0.92
USP40-202ENST00000409945 EIF2AK2P19525 551 aaKnown RBP9.31□□□□□ -0.92
USP40-202ENST00000409945 ERCC5P28715 1186 aaPredicted RBP9.31□□□□□ -0.92
USP40-202ENST00000409945 FAM35AQ86V20 835 aa9.31□□□□□ -0.92
USP40-202ENST00000409945 NXPE3Q969Y0 559 aa9.31□□□□□ -0.92
USP40-202ENST00000409945 GGA1Q9UJY5 639 aa9.31□□□□□ -0.92
USP40-202ENST00000409945 SLC6A14Q9UN76 642 aa9.31□□□□□ -0.92
USP40-202ENST00000409945 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP9.31□□□□□ -0.92
USP40-202ENST00000409945 RNF17Q9BXT8 1623 aaKnown RBP9.31□□□□□ -0.92
USP40-202ENST00000409945 SIN3BO75182 1162 aa9.31□□□□□ -0.92
USP40-202ENST00000409945 HSPA2P54652 639 aa9.31□□□□□ -0.92
USP40-202ENST00000409945 PRPF40BQ6NWY9 871 aaKnown RBP9.31□□□□□ -0.92
USP40-202ENST00000409945 NCOA1Q15788 1441 aa9.3□□□□□ -0.92
USP40-202ENST00000409945 TMEM238LA0A1B0GVL6 79 aa9.3□□□□□ -0.92
USP40-202ENST00000409945 ITGAEP38570 1179 aa9.3□□□□□ -0.92
USP40-202ENST00000409945 FAAP100Q0VG06 881 aa9.3□□□□□ -0.92
USP40-202ENST00000409945 TNFRSF25Q93038 417 aa9.3□□□□□ -0.92
USP40-202ENST00000409945 MUC3BQ9H195 1237 aa9.3□□□□□ -0.92
USP40-202ENST00000409945 ACBD3Q9H3P7 528 aa9.3□□□□□ -0.92
USP40-202ENST00000409945 TRIM33Q9UPN9 1127 aa9.3□□□□□ -0.92
USP40-202ENST00000409945 ADGRL2O95490 1459 aa9.3□□□□□ -0.92
USP40-202ENST00000409945 VSIG8P0DPA2 414 aa9.29□□□□□ -0.92
USP40-202ENST00000409945 ADH7P40394 386 aa9.29□□□□□ -0.92
USP40-202ENST00000409945 ASAP3Q8TDY4 903 aa9.29□□□□□ -0.92
USP40-202ENST00000409945 RNF34Q969K3 372 aa9.29□□□□□ -0.92
USP40-202ENST00000409945 FRMD6Q96NE9 622 aa9.29□□□□□ -0.92
USP40-202ENST00000409945 PBX4Q9BYU1 374 aa9.29□□□□□ -0.92
USP40-202ENST00000409945 AKAP2Q9Y2D5 859 aa9.29□□□□□ -0.92
USP40-202ENST00000409945 PZPP20742 1482 aa9.29□□□□□ -0.92
USP40-202ENST00000409945 PTPRKQ15262 1439 aa9.29□□□□□ -0.92
USP40-202ENST00000409945 TAF1CQ15572 869 aaPredicted RBP9.29□□□□□ -0.92
USP40-202ENST00000409945 ZNF787Q6DD87 383 aa9.29□□□□□ -0.92
USP40-202ENST00000409945 LPIN3Q9BQK8 851 aa9.29□□□□□ -0.92
USP40-202ENST00000409945 ROCK1Q13464 1354 aa9.28□□□□□ -0.92
USP40-202ENST00000409945 TNRQ92752 1358 aa9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms