RNA–Protein interactions for RNA: ENST00000409694.6

SYNE1-210, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,634 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-210ENST00000409694 PALM3A6NDB9 673 aaPredicted RBP8.8□□□□□ -1
SYNE1-210ENST00000409694 GNA11P29992 359 aa8.8□□□□□ -1
SYNE1-210ENST00000409694 GUCY1B3Q02153 619 aa8.8□□□□□ -1
SYNE1-210ENST00000409694 VTI1AQ96AJ9 217 aa8.8□□□□□ -1
SYNE1-210ENST00000409694 ZBTB24O43167 697 aaPredicted RBP8.8□□□□□ -1
SYNE1-210ENST00000409694 SLC8A1P32418 973 aa8.8□□□□□ -1
SYNE1-210ENST00000409694 DBN1Q16643 649 aa8.8□□□□□ -1
SYNE1-210ENST00000409694 BAG5Q9UL15 447 aa8.8□□□□□ -1
SYNE1-210ENST00000409694 C8orf74Q6P047 294 aa8.8□□□□□ -1
SYNE1-210ENST00000409694 NDUFAB1O14561 156 aa8.8□□□□□ -1
SYNE1-210ENST00000409694 SMIM24O75264 130 aa8.8□□□□□ -1
SYNE1-210ENST00000409694 PLCG2P16885 1265 aa8.8□□□□□ -1
SYNE1-210ENST00000409694 GUCA1BQ9UMX6 200 aa8.8□□□□□ -1
SYNE1-210ENST00000409694 EXOC7Q9UPT5 735 aa8.8□□□□□ -1
SYNE1-210ENST00000409694 AFG3L2Q9Y4W6 797 aa8.8□□□□□ -1
SYNE1-210ENST00000409694 C9orf84Q5VXU9 1444 aa8.8□□□□□ -1
SYNE1-210ENST00000409694 DAPK3O43293 454 aa8.8□□□□□ -1
SYNE1-210ENST00000409694 ZBTB43O43298 467 aa8.8□□□□□ -1
SYNE1-210ENST00000409694 HHATQ5VTY9 493 aa8.8□□□□□ -1
SYNE1-210ENST00000409694 TTF2Q9UNY4 1162 aaKnown RBP8.8□□□□□ -1
SYNE1-210ENST00000409694 SLC12A2P55011 1212 aa8.8□□□□□ -1
SYNE1-210ENST00000409694 DENND2CQ68D51 928 aa8.8□□□□□ -1
SYNE1-210ENST00000409694 NSD2O96028 1365 aa8.8□□□□□ -1
SYNE1-210ENST00000409694 PIK3R4Q99570 1358 aa8.8□□□□□ -1
SYNE1-210ENST00000409694 ARMC9Q7Z3E5 817 aa8.8□□□□□ -1
SYNE1-210ENST00000409694 CYP26C1Q6V0L0 522 aa8.79□□□□□ -1
SYNE1-210ENST00000409694 BRAPQ7Z569 592 aa8.79□□□□□ -1
SYNE1-210ENST00000409694 ARHGAP30Q7Z6I6 1101 aaPredicted RBP8.79□□□□□ -1
SYNE1-210ENST00000409694 SMAP1Q8IYB5 467 aaPredicted RBP8.79□□□□□ -1
SYNE1-210ENST00000409694 ITSN2Q9NZM3 1697 aa8.79□□□□□ -1
SYNE1-210ENST00000409694 EIF3DO15371 548 aaKnown RBP eCLIP8.79□□□□□ -1
SYNE1-210ENST00000409694 HEATR3Q7Z4Q2 680 aa8.79□□□□□ -1
SYNE1-210ENST00000409694 PDCD7Q8N8D1 485 aaKnown RBP8.79□□□□□ -1
SYNE1-210ENST00000409694 EXOC6BQ9Y2D4 811 aa8.79□□□□□ -1
SYNE1-210ENST00000409694 NSD3Q9BZ95 1437 aa8.79□□□□□ -1
SYNE1-210ENST00000409694 FANCD2Q9BXW9 1451 aa8.79□□□□□ -1
SYNE1-210ENST00000409694 KRT79Q5XKE5 535 aa8.79□□□□□ -1
SYNE1-210ENST00000409694 PTGS1P23219 599 aa8.79□□□□□ -1
SYNE1-210ENST00000409694 NAPAP54920 295 aa8.79□□□□□ -1
SYNE1-210ENST00000409694 PHEXP78562 749 aa8.79□□□□□ -1
SYNE1-210ENST00000409694 PPP2R5EQ16537 467 aa8.79□□□□□ -1
SYNE1-210ENST00000409694 ZKSCAN3Q9BRR0 538 aa8.79□□□□□ -1
SYNE1-210ENST00000409694 RNF216Q9NWF9 866 aaPredicted RBP8.79□□□□□ -1
SYNE1-210ENST00000409694 EPS15L1Q9UBC2 864 aa8.79□□□□□ -1
SYNE1-210ENST00000409694 MCM7P33993 719 aa8.79□□□□□ -1
SYNE1-210ENST00000409694 PPP2R3AQ06190 1150 aa8.79□□□□□ -1
SYNE1-210ENST00000409694 PPP1R21Q6ZMI0 780 aa8.79□□□□□ -1
SYNE1-210ENST00000409694 DPH6Q7L8W6 267 aa8.79□□□□□ -1
SYNE1-210ENST00000409694 AFMP43652 599 aa8.79□□□□□ -1
SYNE1-210ENST00000409694 XAB2Q9HCS7 855 aaKnown RBP8.79□□□□□ -1
SYNE1-210ENST00000409694 EIF2AK4Q9P2K8 1649 aaKnown RBP8.79□□□□□ -1
SYNE1-210ENST00000409694 TROVE2P10155 538 aaKnown RBP eCLIP8.79□□□□□ -1
SYNE1-210ENST00000409694 CNNM4Q6P4Q7 775 aa8.79□□□□□ -1
SYNE1-210ENST00000409694 NUP58Q9BVL2 599 aa8.79□□□□□ -1
SYNE1-210ENST00000409694 SPOPO43791 374 aa8.79□□□□□ -1
SYNE1-210ENST00000409694 CLCN1P35523 988 aa8.79□□□□□ -1
SYNE1-210ENST00000409694 BMP2KLQ5H9B9 411 aa8.79□□□□□ -1
SYNE1-210ENST00000409694 LEO1Q8WVC0 666 aaPredicted RBP8.79□□□□□ -1
SYNE1-210ENST00000409694 RNF34Q969K3 372 aa8.79□□□□□ -1
SYNE1-210ENST00000409694 TRIM4Q9C037 500 aa8.79□□□□□ -1
SYNE1-210ENST00000409694 GLT8D2Q9H1C3 349 aa8.79□□□□□ -1
SYNE1-210ENST00000409694 KRT5P13647 590 aa8.79□□□□□ -1
SYNE1-210ENST00000409694 HPDP32754 393 aaPredicted RBP8.79□□□□□ -1
SYNE1-210ENST00000409694 RAB17Q9H0T7 212 aa8.79□□□□□ -1
SYNE1-210ENST00000409694 TRMT112Q9UI30 125 aaKnown RBP8.79□□□□□ -1
SYNE1-210ENST00000409694 VSIG1Q86XK7 387 aa8.78□□□□□ -1
SYNE1-210ENST00000409694 SIRT1Q96EB6 747 aa8.78□□□□□ -1
SYNE1-210ENST00000409694 NAPGQ99747 312 aaPredicted RBP8.78□□□□□ -1
SYNE1-210ENST00000409694 RPS6KA2Q15349 733 aa8.78□□□□□ -1
SYNE1-210ENST00000409694 CCDC152Q4G0S7 254 aa8.78□□□□□ -1
SYNE1-210ENST00000409694 ECHDC1Q9NTX5 307 aa8.78□□□□□ -1
SYNE1-210ENST00000409694 AKR1B15C9JRZ8 316 aaPredicted RBP8.78□□□□□ -1
SYNE1-210ENST00000409694 PPFIA4O75335 1185 aa8.78□□□□□ -1
SYNE1-210ENST00000409694 ARHGAP4P98171 946 aa8.78□□□□□ -1
SYNE1-210ENST00000409694 ARID5AQ03989 594 aa8.78□□□□□ -1
SYNE1-210ENST00000409694 ZNF569Q5MCW4 686 aa8.78□□□□□ -1
SYNE1-210ENST00000409694 MYD88Q99836 296 aa8.78□□□□□ -1
SYNE1-210ENST00000409694 RBSNQ9H1K0 784 aa8.78□□□□□ -1
SYNE1-210ENST00000409694 EVI5O60447 810 aa8.78□□□□□ -1
SYNE1-210ENST00000409694 HAUS1Q96CS2 278 aa8.78□□□□□ -1
SYNE1-210ENST00000409694 TTC21BQ7Z4L5 1316 aa8.78□□□□□ -1
SYNE1-210ENST00000409694 YWHAEP62258 255 aaKnown RBP8.78□□□□□ -1
SYNE1-210ENST00000409694 ANKRD20A4Q4UJ75 823 aa8.78□□□□□ -1
SYNE1-210ENST00000409694 ANKRD20A8PQ5CZ79 823 aa8.78□□□□□ -1
SYNE1-210ENST00000409694 ANKRD20A2Q5SQ80 823 aa8.78□□□□□ -1
SYNE1-210ENST00000409694 ANKRD20A1Q5TYW2 823 aa8.78□□□□□ -1
SYNE1-210ENST00000409694 ANKRD20A3Q5VUR7 823 aa8.78□□□□□ -1
SYNE1-210ENST00000409694 ZNF804AQ7Z570 1209 aa8.78□□□□□ -1
SYNE1-210ENST00000409694 TXNDC2Q86VQ3 553 aa8.78□□□□□ -1
SYNE1-210ENST00000409694 IPO11Q9UI26 975 aaKnown RBP8.78□□□□□ -1
SYNE1-210ENST00000409694 TXNDC9O14530 226 aa8.78□□□□□ -1
SYNE1-210ENST00000409694 SSFA2P28290 1259 aa8.78□□□□□ -1
SYNE1-210ENST00000409694 PSMD6Q15008 389 aa8.78□□□□□ -1
SYNE1-210ENST00000409694 CCDC122Q5T0U0 273 aa8.78□□□□□ -1
SYNE1-210ENST00000409694 ALG1Q9BT22 464 aa8.78□□□□□ -1
SYNE1-210ENST00000409694 DBF4Q9UBU7 674 aaPredicted RBP8.78□□□□□ -1
SYNE1-210ENST00000409694 FAF1Q9UNN5 650 aaPredicted RBP8.78□□□□□ -1
SYNE1-210ENST00000409694 DKC1O60832 514 aaKnown RBP eCLIP8.78□□□□□ -1
SYNE1-210ENST00000409694 AOPEPQ8N6M6 819 aa8.78□□□□□ -1
SYNE1-210ENST00000409694 HELBQ8NG08 1087 aaPredicted RBP8.78□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 61.4 ms