RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 BBOX1O75936 387 aa10.56□□□□□ -0.72
LIG4-202ENST00000405925 NASPP49321 788 aaPredicted RBP10.56□□□□□ -0.72
LIG4-202ENST00000405925 TRIM28Q13263 835 aaKnown RBP10.56□□□□□ -0.72
LIG4-202ENST00000405925 TTLL5Q6EMB2 1281 aa10.56□□□□□ -0.72
LIG4-202ENST00000405925 KIAA0825Q8IV33 1275 aa10.56□□□□□ -0.72
LIG4-202ENST00000405925 IL27Q8NEV9 243 aa10.56□□□□□ -0.72
LIG4-202ENST00000405925 LETM1O95202 739 aaPredicted RBP10.55□□□□□ -0.72
LIG4-202ENST00000405925 PTH1RQ03431 593 aa10.55□□□□□ -0.72
LIG4-202ENST00000405925 CEP131Q9UPN4 1083 aa10.55□□□□□ -0.72
LIG4-202ENST00000405925 DTNBO60941 627 aa10.55□□□□□ -0.72
LIG4-202ENST00000405925 TCP10Q12799 353 aa10.55□□□□□ -0.72
LIG4-202ENST00000405925 CCDC178Q5BJE1 867 aa10.55□□□□□ -0.72
LIG4-202ENST00000405925 TSPY26PQ9H489 355 aa10.55□□□□□ -0.72
LIG4-202ENST00000405925 RPS6KB1P23443 525 aa10.55□□□□□ -0.72
LIG4-202ENST00000405925 NFIXQ14938 502 aa10.55□□□□□ -0.72
LIG4-202ENST00000405925 LINC00116Q8NCU8 138 aa10.55□□□□□ -0.72
LIG4-202ENST00000405925 LEMD3Q9Y2U8 911 aa10.55□□□□□ -0.72
LIG4-202ENST00000405925 COL5A2P05997 1499 aaPredicted RBP10.55□□□□□ -0.72
LIG4-202ENST00000405925 HSPA4P34932 840 aa10.54□□□□□ -0.72
LIG4-202ENST00000405925 GNAQP50148 359 aa10.54□□□□□ -0.72
LIG4-202ENST00000405925 EIF6P56537 245 aaKnown RBP10.54□□□□□ -0.72
LIG4-202ENST00000405925 CTDSPL2Q05D32 466 aa10.54□□□□□ -0.72
LIG4-202ENST00000405925 TGFBRAP1Q8WUH2 860 aa10.54□□□□□ -0.72
LIG4-202ENST00000405925 SDR42E1Q8WUS8 393 aa10.54□□□□□ -0.72
LIG4-202ENST00000405925 BAG4O95429 457 aaKnown RBP10.54□□□□□ -0.72
LIG4-202ENST00000405925 CCDC192P0DO97 292 aa10.54□□□□□ -0.72
LIG4-202ENST00000405925 PAXIP1Q6ZW49 1069 aaPredicted RBP10.54□□□□□ -0.72
LIG4-202ENST00000405925 CELF1Q92879 486 aaKnown RBP10.54□□□□□ -0.72
LIG4-202ENST00000405925 PXDNQ92626 1479 aa10.54□□□□□ -0.72
LIG4-202ENST00000405925 SIPA1L2Q9P2F8 1722 aaPredicted RBP10.54□□□□□ -0.72
LIG4-202ENST00000405925 USP17L12C9JPN9 530 aa10.54□□□□□ -0.72
LIG4-202ENST00000405925 USP17L21D6R901 530 aa10.54□□□□□ -0.72
LIG4-202ENST00000405925 SCNN1DP51172 638 aa10.54□□□□□ -0.72
LIG4-202ENST00000405925 GRAPQ13588 217 aa10.54□□□□□ -0.72
LIG4-202ENST00000405925 GRAPLQ8TC17 118 aaPredicted RBP10.54□□□□□ -0.72
LIG4-202ENST00000405925 NOC3LQ8WTT2 800 aaKnown RBP10.54□□□□□ -0.72
LIG4-202ENST00000405925 CCDC12Q8WUD4 166 aaPredicted RBP10.54□□□□□ -0.72
LIG4-202ENST00000405925 PTPDC1A2A3K4 754 aa10.53□□□□□ -0.72
LIG4-202ENST00000405925 ZSCAN22P10073 491 aaPredicted RBP10.53□□□□□ -0.72
LIG4-202ENST00000405925 MRE11P49959 708 aa10.53□□□□□ -0.72
LIG4-202ENST00000405925 CAMK4Q16566 473 aa10.53□□□□□ -0.72
LIG4-202ENST00000405925 DSCC1Q9BVC3 393 aa10.53□□□□□ -0.72
LIG4-202ENST00000405925 PALD1Q9ULE6 856 aa10.53□□□□□ -0.72
LIG4-202ENST00000405925 HSPD1P10809 573 aaKnown RBP10.53□□□□□ -0.72
LIG4-202ENST00000405925 LMOD1P29536 600 aaPredicted RBP10.53□□□□□ -0.72
LIG4-202ENST00000405925 PDIA6Q15084 440 aa10.53□□□□□ -0.72
LIG4-202ENST00000405925 CUL5Q93034 780 aa10.53□□□□□ -0.72
LIG4-202ENST00000405925 TEKT1Q969V4 418 aa10.53□□□□□ -0.72
LIG4-202ENST00000405925 CDHR2Q9BYE9 1310 aa10.53□□□□□ -0.72
LIG4-202ENST00000405925 ZBTB7AO95365 584 aa10.53□□□□□ -0.72
LIG4-202ENST00000405925 HEATR3Q7Z4Q2 680 aa10.53□□□□□ -0.72
LIG4-202ENST00000405925 GPR101Q96P66 508 aaPredicted RBP10.53□□□□□ -0.72
LIG4-202ENST00000405925 TRIM5Q9C035 493 aa10.53□□□□□ -0.72
LIG4-202ENST00000405925 ANGEL1Q9UNK9 670 aaKnown RBP10.53□□□□□ -0.72
LIG4-202ENST00000405925 KIF20BQ96Q89 1820 aa10.53□□□□□ -0.72
LIG4-202ENST00000405925 DHX8Q14562 1220 aaKnown RBP10.53□□□□□ -0.72
LIG4-202ENST00000405925 DLGAP5Q15398 846 aa10.53□□□□□ -0.72
LIG4-202ENST00000405925 DBNDD1Q9H9R9 158 aa10.53□□□□□ -0.72
LIG4-202ENST00000405925 NCOA5Q9HCD5 579 aaKnown RBP10.53□□□□□ -0.72
LIG4-202ENST00000405925 BSDC1Q9NW68 430 aaPredicted RBP10.53□□□□□ -0.72
LIG4-202ENST00000405925 TNNI2P48788 182 aa10.52□□□□□ -0.72
LIG4-202ENST00000405925 RAB3GAP1Q15042 981 aa10.52□□□□□ -0.72
LIG4-202ENST00000405925 ANO8Q9HCE9 1232 aaPredicted RBP10.52□□□□□ -0.72
LIG4-202ENST00000405925 CARMIL3Q8ND23 1372 aa10.52□□□□□ -0.73
LIG4-202ENST00000405925 RTL9Q8NET4 1388 aa10.52□□□□□ -0.73
LIG4-202ENST00000405925 SYCE3A1L190 88 aa10.52□□□□□ -0.73
LIG4-202ENST00000405925 PATL2C9JE40 543 aaKnown RBP10.52□□□□□ -0.73
LIG4-202ENST00000405925 PPP4R3BQ5MIZ7 849 aa10.52□□□□□ -0.73
LIG4-202ENST00000405925 USP40Q9NVE5 1235 aa10.52□□□□□ -0.73
LIG4-202ENST00000405925 KDM6AO15550 1401 aaPredicted RBP10.52□□□□□ -0.73
LIG4-202ENST00000405925 CAMTA2O94983 1202 aa10.52□□□□□ -0.73
LIG4-202ENST00000405925 FGAP02671 866 aa10.52□□□□□ -0.73
LIG4-202ENST00000405925 CALM1P0DP23 149 aa10.52□□□□□ -0.73
LIG4-202ENST00000405925 CALM2P0DP24 149 aa10.52□□□□□ -0.73
LIG4-202ENST00000405925 CALM3P0DP25 149 aa10.52□□□□□ -0.73
LIG4-202ENST00000405925 RASGRF1Q13972 1273 aa10.52□□□□□ -0.73
LIG4-202ENST00000405925 UBE3CQ15386 1083 aa10.52□□□□□ -0.73
LIG4-202ENST00000405925 TMC4Q7Z404 712 aa10.52□□□□□ -0.73
LIG4-202ENST00000405925 FSIP1Q8NA03 581 aa10.52□□□□□ -0.73
LIG4-202ENST00000405925 TMEM87BQ96K49 555 aa10.52□□□□□ -0.73
LIG4-202ENST00000405925 MYL10Q9BUA6 226 aa10.52□□□□□ -0.73
LIG4-202ENST00000405925 E7EWF7 191 aa10.51□□□□□ -0.73
LIG4-202ENST00000405925 NPR1P16066 1061 aa10.51□□□□□ -0.73
LIG4-202ENST00000405925 RC3H1Q5TC82 1133 aaKnown RBP10.51□□□□□ -0.73
LIG4-202ENST00000405925 CERS3Q8IU89 383 aa10.51□□□□□ -0.73
LIG4-202ENST00000405925 CEP57L1Q8IYX8 460 aa10.51□□□□□ -0.73
LIG4-202ENST00000405925 IFNL3Q8IZI9 196 aa10.51□□□□□ -0.73
LIG4-202ENST00000405925 ATP10DQ9P241 1426 aa10.51□□□□□ -0.73
LIG4-202ENST00000405925 FOXO4P98177 505 aa10.51□□□□□ -0.73
LIG4-202ENST00000405925 MAP3K11Q16584 847 aa10.51□□□□□ -0.73
LIG4-202ENST00000405925 AKNAD1Q5T1N1 836 aa10.51□□□□□ -0.73
LIG4-202ENST00000405925 PI4K2BQ8TCG2 481 aa10.51□□□□□ -0.73
LIG4-202ENST00000405925 PANK2Q9BZ23 570 aa10.51□□□□□ -0.73
LIG4-202ENST00000405925 ZSCAN16Q9H4T2 348 aaPredicted RBP10.51□□□□□ -0.73
LIG4-202ENST00000405925 BMP2KQ9NSY1 1161 aaPredicted RBP10.51□□□□□ -0.73
LIG4-202ENST00000405925 IFT172Q9UG01 1749 aa10.51□□□□□ -0.73
LIG4-202ENST00000405925 ZMYM1Q5SVZ6 1142 aa10.51□□□□□ -0.73
LIG4-202ENST00000405925 ZNF589Q86UQ0 364 aaPredicted RBP10.51□□□□□ -0.73
LIG4-202ENST00000405925 INTS4Q96HW7 963 aaKnown RBP10.51□□□□□ -0.73
LIG4-202ENST00000405925 MINPP1Q9UNW1 487 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms