RNA–Protein interactions for RNA: ENST00000400018.7

SKA3-203, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SKA3, Length 2,745 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-203ENST00000400018 ATP2B4P23634 1241 aa14.03□□□□□ -0.16
SKA3-203ENST00000400018 RBM25P49756 843 aaKnown RBP14.03□□□□□ -0.16
SKA3-203ENST00000400018 PRELPP51888 382 aa14.03□□□□□ -0.16
SKA3-203ENST00000400018 NEK4P51957 841 aa14.03□□□□□ -0.16
SKA3-203ENST00000400018 KIAA0825Q8IV33 1275 aa14.03□□□□□ -0.16
SKA3-203ENST00000400018 IPO9Q96P70 1041 aaKnown RBP14.03□□□□□ -0.16
SKA3-203ENST00000400018 MED23Q9ULK4 1368 aa14.03□□□□□ -0.16
SKA3-203ENST00000400018 CYP21A2P08686 494 aa14.03□□□□□ -0.16
SKA3-203ENST00000400018 CACNB3P54284 484 aa14.03□□□□□ -0.16
SKA3-203ENST00000400018 CREB3L3Q68CJ9 461 aa14.03□□□□□ -0.16
SKA3-203ENST00000400018 STOX1Q6ZVD7 989 aa14.03□□□□□ -0.16
SKA3-203ENST00000400018 RAB11FIP4Q86YS3 637 aa14.03□□□□□ -0.16
SKA3-203ENST00000400018 TDRD7Q8NHU6 1098 aaKnown RBP14.03□□□□□ -0.16
SKA3-203ENST00000400018 GPHNQ9NQX3 736 aaPredicted RBP14.03□□□□□ -0.16
SKA3-203ENST00000400018 GNL3LQ9NVN8 582 aaKnown RBP14.03□□□□□ -0.16
SKA3-203ENST00000400018 YDJCA8MPS7 323 aa14.02□□□□□ -0.16
SKA3-203ENST00000400018 PPIP5K2O43314 1243 aa14.02□□□□□ -0.16
SKA3-203ENST00000400018 STYK1Q6J9G0 422 aa14.02□□□□□ -0.16
SKA3-203ENST00000400018 ZNF804AQ7Z570 1209 aa14.02□□□□□ -0.16
SKA3-203ENST00000400018 CNKSR1Q969H4 720 aa14.02□□□□□ -0.16
SKA3-203ENST00000400018 COL4A5P29400 1685 aa14.02□□□□□ -0.16
SKA3-203ENST00000400018 SLC27A2O14975 620 aa14.02□□□□□ -0.17
SKA3-203ENST00000400018 MAP3K12Q12852 859 aa14.02□□□□□ -0.17
SKA3-203ENST00000400018 AIDAQ96BJ3 306 aa14.02□□□□□ -0.17
SKA3-203ENST00000400018 NSUN4Q96CB9 384 aaKnown RBP14.02□□□□□ -0.17
SKA3-203ENST00000400018 JAKMIP1Q96N16 626 aaKnown RBP14.02□□□□□ -0.17
SKA3-203ENST00000400018 PODXL2Q9NZ53 605 aa14.02□□□□□ -0.17
SKA3-203ENST00000400018 TACC3Q9Y6A5 838 aa14.02□□□□□ -0.17
SKA3-203ENST00000400018 FGAP02671 866 aa14.01□□□□□ -0.17
SKA3-203ENST00000400018 CASTP20810 708 aaKnown RBP14.01□□□□□ -0.17
SKA3-203ENST00000400018 CTDSPL2Q05D32 466 aa14.01□□□□□ -0.17
SKA3-203ENST00000400018 NAA16Q6N069 864 aaPredicted RBP14.01□□□□□ -0.17
SKA3-203ENST00000400018 RUFY2Q8WXA3 655 aa14.01□□□□□ -0.17
SKA3-203ENST00000400018 APPBP2Q92624 585 aa14.01□□□□□ -0.17
SKA3-203ENST00000400018 MAP4K1Q92918 833 aa14.01□□□□□ -0.17
SKA3-203ENST00000400018 EPB41L4AQ9HCS5 686 aaPredicted RBP14.01□□□□□ -0.17
SKA3-203ENST00000400018 SCN9AQ15858 1988 aa14.01□□□□□ -0.17
SKA3-203ENST00000400018 ECE2O60344 883 aa14.01□□□□□ -0.17
SKA3-203ENST00000400018 HSPA4P34932 840 aa14.01□□□□□ -0.17
SKA3-203ENST00000400018 NECTIN1Q15223 517 aa14.01□□□□□ -0.17
SKA3-203ENST00000400018 TMX4Q9H1E5 349 aaPredicted RBP14.01□□□□□ -0.17
SKA3-203ENST00000400018 PIM2Q9P1W9 311 aa14.01□□□□□ -0.17
SKA3-203ENST00000400018 CYP2D6P10635 497 aa14□□□□□ -0.17
SKA3-203ENST00000400018 DZIP1Q86YF9 867 aaKnown RBP14□□□□□ -0.17
SKA3-203ENST00000400018 PPIL4Q8WUA2 492 aaKnown RBP eCLIP14□□□□□ -0.17
SKA3-203ENST00000400018 ARAP2Q8WZ64 1704 aa14□□□□□ -0.17
SKA3-203ENST00000400018 PRDM1O75626 825 aa13.99□□□□□ -0.17
SKA3-203ENST00000400018 ZNF512BQ96KM6 892 aaPredicted RBP13.99□□□□□ -0.17
SKA3-203ENST00000400018 STRBPQ96SI9 672 aaKnown RBP13.99□□□□□ -0.17
SKA3-203ENST00000400018 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.99□□□□□ -0.17
SKA3-203ENST00000400018 SLC4A4Q9Y6R1 1079 aa13.99□□□□□ -0.17
SKA3-203ENST00000400018 MINDY4BA8MYZ0 360 aa13.99□□□□□ -0.17
SKA3-203ENST00000400018 LDHBP07195 334 aaKnown RBP13.99□□□□□ -0.17
SKA3-203ENST00000400018 DALRD3Q5D0E6 543 aaKnown RBP13.99□□□□□ -0.17
SKA3-203ENST00000400018 SAP30BPQ9UHR5 308 aaKnown RBP13.99□□□□□ -0.17
SKA3-203ENST00000400018 BRPF3Q9ULD4 1205 aa13.99□□□□□ -0.17
SKA3-203ENST00000400018 LARGE1O95461 756 aa13.99□□□□□ -0.17
SKA3-203ENST00000400018 TTF1Q15361 905 aaPredicted RBP13.99□□□□□ -0.17
SKA3-203ENST00000400018 LARGE2Q8N3Y3 721 aa13.99□□□□□ -0.17
SKA3-203ENST00000400018 NBPF3Q9H094 633 aa13.99□□□□□ -0.17
SKA3-203ENST00000400018 SPON1Q9HCB6 807 aa13.99□□□□□ -0.17
SKA3-203ENST00000400018 ADAMTSL1Q8N6G6 1762 aa13.98□□□□□ -0.17
SKA3-203ENST00000400018 NFKBIEO00221 500 aa13.98□□□□□ -0.17
SKA3-203ENST00000400018 SH3RF3Q8TEJ3 882 aaPredicted RBP13.98□□□□□ -0.17
SKA3-203ENST00000400018 KDM4AO75164 1064 aa13.98□□□□□ -0.17
SKA3-203ENST00000400018 HMGB2P26583 209 aaKnown RBP13.98□□□□□ -0.17
SKA3-203ENST00000400018 HELLSQ9NRZ9 838 aa13.98□□□□□ -0.17
SKA3-203ENST00000400018 QSER1Q2KHR3 1735 aa13.98□□□□□ -0.17
SKA3-203ENST00000400018 GSG1L2A8MUP6 293 aa13.97□□□□□ -0.17
SKA3-203ENST00000400018 IL1R1P14778 569 aa13.97□□□□□ -0.17
SKA3-203ENST00000400018 STK3Q13188 491 aa13.97□□□□□ -0.17
SKA3-203ENST00000400018 PICALMQ13492 652 aa13.97□□□□□ -0.17
SKA3-203ENST00000400018 RRP12Q5JTH9 1297 aaKnown RBP13.97□□□□□ -0.17
SKA3-203ENST00000400018 ZKSCAN3Q9BRR0 538 aa13.97□□□□□ -0.17
SKA3-203ENST00000400018 TTF2Q9UNY4 1162 aaKnown RBP13.97□□□□□ -0.17
SKA3-203ENST00000400018 LTBP1Q14766 1721 aa13.97□□□□□ -0.17
SKA3-203ENST00000400018 MAGEB6P1A0A0J9YX57 407 aa13.97□□□□□ -0.17
SKA3-203ENST00000400018 HIP1O00291 1037 aa13.97□□□□□ -0.17
SKA3-203ENST00000400018 TBC1D10CQ8IV04 446 aa13.97□□□□□ -0.17
SKA3-203ENST00000400018 MAPKAPK5Q8IW41 473 aa13.97□□□□□ -0.17
SKA3-203ENST00000400018 RIOK1Q9BRS2 568 aaKnown RBP13.97□□□□□ -0.17
SKA3-203ENST00000400018 USP17L8P0C7I0 530 aa13.96□□□□□ -0.17
SKA3-203ENST00000400018 RBM5P52756 815 aaKnown RBP eCLIP13.96□□□□□ -0.17
SKA3-203ENST00000400018 FOXD4L5Q5VV16 416 aaPredicted RBP13.96□□□□□ -0.17
SKA3-203ENST00000400018 ZGPATQ8N5A5 531 aaKnown RBP13.96□□□□□ -0.17
SKA3-203ENST00000400018 FOXD4L4Q8WXT5 416 aaPredicted RBP13.96□□□□□ -0.17
SKA3-203ENST00000400018 TOMM22Q9NS69 142 aa13.96□□□□□ -0.17
SKA3-203ENST00000400018 MYH7P12883 1935 aa13.96□□□□□ -0.17
SKA3-203ENST00000400018 BAZ2AQ9UIF9 1905 aaKnown RBP13.96□□□□□ -0.17
SKA3-203ENST00000400018 EGFRP00533 1210 aa13.96□□□□□ -0.18
SKA3-203ENST00000400018 UBE3CQ15386 1083 aa13.96□□□□□ -0.18
SKA3-203ENST00000400018 TGFBRAP1Q8WUH2 860 aa13.96□□□□□ -0.18
SKA3-203ENST00000400018 CHAMP1Q96JM3 812 aa13.96□□□□□ -0.18
SKA3-203ENST00000400018 SYT17Q9BSW7 474 aa13.96□□□□□ -0.18
SKA3-203ENST00000400018 SENP2Q9HC62 589 aa13.96□□□□□ -0.18
SKA3-203ENST00000400018 NAP1L2Q9ULW6 460 aaPredicted RBP13.96□□□□□ -0.18
SKA3-203ENST00000400018 CCDC93Q567U6 631 aa13.95□□□□□ -0.18
SKA3-203ENST00000400018 RBM26Q5T8P6 1007 aaKnown RBP13.95□□□□□ -0.18
SKA3-203ENST00000400018 ARHGAP27Q6ZUM4 889 aa13.95□□□□□ -0.18
SKA3-203ENST00000400018 IFNL3Q8IZI9 196 aa13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms