RNA–Protein interactions for RNA: ENST00000396386.6

CBX3-202, Transcript of chromobox 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CBX3, Length 1,857 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-202ENST00000396386 MBD4O95243 580 aa17.61■□□□□ 0.41
CBX3-202ENST00000396386 PDIA3P30101 505 aaKnown RBP17.61■□□□□ 0.41
CBX3-202ENST00000396386 TRDNQ13061 729 aa17.61■□□□□ 0.41
CBX3-202ENST00000396386 ALX1Q15699 326 aa17.61■□□□□ 0.41
CBX3-202ENST00000396386 DDX11Q96FC9 970 aa17.61■□□□□ 0.41
CBX3-202ENST00000396386 NLRP3Q96P20 1036 aa17.61■□□□□ 0.41
CBX3-202ENST00000396386 NBPF3Q9H094 633 aa17.61■□□□□ 0.41
CBX3-202ENST00000396386 H3BQV1 296 aa17.61■□□□□ 0.41
CBX3-202ENST00000396386 ONECUT3O60422 494 aaPredicted RBP17.61■□□□□ 0.41
CBX3-202ENST00000396386 IFFO2Q5TF58 517 aa17.61■□□□□ 0.41
CBX3-202ENST00000396386 TBC1D10CQ8IV04 446 aa17.61■□□□□ 0.41
CBX3-202ENST00000396386 SEPT12Q8IYM1 358 aa17.61■□□□□ 0.41
CBX3-202ENST00000396386 ARHGEF1Q92888 912 aaKnown RBP17.61■□□□□ 0.41
CBX3-202ENST00000396386 COL1A1P02452 1464 aaPredicted RBP17.6■□□□□ 0.41
CBX3-202ENST00000396386 SALL1Q9NSC2 1324 aa17.6■□□□□ 0.41
CBX3-202ENST00000396386 CTDNEP1O95476 244 aa17.6■□□□□ 0.41
CBX3-202ENST00000396386 ANTXR2P58335 489 aa17.6■□□□□ 0.41
CBX3-202ENST00000396386 CCT2P78371 535 aaKnown RBP17.6■□□□□ 0.41
CBX3-202ENST00000396386 CCDC183Q5T5S1 534 aa17.6■□□□□ 0.41
CBX3-202ENST00000396386 TPTE2Q6XPS3 522 aa17.6■□□□□ 0.41
CBX3-202ENST00000396386 CELF1Q92879 486 aaKnown RBP17.6■□□□□ 0.41
CBX3-202ENST00000396386 MINPP1Q9UNW1 487 aa17.6■□□□□ 0.41
CBX3-202ENST00000396386 ELP1O95163 1332 aa17.6■□□□□ 0.41
CBX3-202ENST00000396386 PNPLA7Q6ZV29 1317 aa17.6■□□□□ 0.41
CBX3-202ENST00000396386 CACNA1SQ13698 1873 aa17.59■□□□□ 0.41
CBX3-202ENST00000396386 CARMIL3Q8ND23 1372 aa17.59■□□□□ 0.41
CBX3-202ENST00000396386 BRWD3Q6RI45 1802 aa17.59■□□□□ 0.41
CBX3-202ENST00000396386 GNAT2P19087 354 aa17.59■□□□□ 0.41
CBX3-202ENST00000396386 RESTQ13127 1097 aa17.59■□□□□ 0.41
CBX3-202ENST00000396386 NAA16Q6N069 864 aaPredicted RBP17.59■□□□□ 0.41
CBX3-202ENST00000396386 NCOA5Q9HCD5 579 aaKnown RBP17.59■□□□□ 0.41
CBX3-202ENST00000396386 LRP2BPQ9P2M1 347 aa17.59■□□□□ 0.41
CBX3-202ENST00000396386 ECM29Q5VYK3 1845 aa17.59■□□□□ 0.41
CBX3-202ENST00000396386 GOLGA8BA8MQT2 603 aa17.58■□□□□ 0.41
CBX3-202ENST00000396386 PATL2C9JE40 543 aaKnown RBP17.58■□□□□ 0.41
CBX3-202ENST00000396386 CAVIN4Q5BKX8 364 aa17.58■□□□□ 0.41
CBX3-202ENST00000396386 AMIGO3Q86WK7 504 aa17.58■□□□□ 0.41
CBX3-202ENST00000396386 NAPBQ9H115 298 aa17.58■□□□□ 0.41
CBX3-202ENST00000396386 ARMT1Q9H993 441 aa17.58■□□□□ 0.41
CBX3-202ENST00000396386 EPB41L4AQ9HCS5 686 aaPredicted RBP17.58■□□□□ 0.41
CBX3-202ENST00000396386 KLF18A0A0U1RQI7 1052 aa17.58■□□□□ 0.4
CBX3-202ENST00000396386 RFC4P35249 363 aa17.58■□□□□ 0.4
CBX3-202ENST00000396386 GYG1P46976 350 aa17.58■□□□□ 0.4
CBX3-202ENST00000396386 ANP32BQ92688 251 aaKnown RBP17.58■□□□□ 0.4
CBX3-202ENST00000396386 BCL11BQ9C0K0 894 aaPredicted RBP17.58■□□□□ 0.4
CBX3-202ENST00000396386 ZSCAN16Q9H4T2 348 aaPredicted RBP17.58■□□□□ 0.4
CBX3-202ENST00000396386 GPHNQ9NQX3 736 aaPredicted RBP17.58■□□□□ 0.4
CBX3-202ENST00000396386 EP400Q96L91 3159 aa17.57■□□□□ 0.4
CBX3-202ENST00000396386 RPS8P62241 208 aaKnown RBP17.57■□□□□ 0.4
CBX3-202ENST00000396386 IFNL3Q8IZI9 196 aa17.57■□□□□ 0.4
CBX3-202ENST00000396386 SCAND2PQ9GZW5 306 aaPredicted RBP17.57■□□□□ 0.4
CBX3-202ENST00000396386 RBSNQ9H1K0 784 aa17.57■□□□□ 0.4
CBX3-202ENST00000396386 KIAA1551Q9HCM1 1747 aa17.57■□□□□ 0.4
CBX3-202ENST00000396386 DHX16O60231 1041 aaKnown RBP17.56■□□□□ 0.4
CBX3-202ENST00000396386 TRAPPC3LQ5T215 181 aa17.56■□□□□ 0.4
CBX3-202ENST00000396386 TTC6Q86TZ1 520 aa17.56■□□□□ 0.4
CBX3-202ENST00000396386 VPS37DQ86XT2 251 aa17.56■□□□□ 0.4
CBX3-202ENST00000396386 LCORLQ8N3X6 602 aa17.56■□□□□ 0.4
CBX3-202ENST00000396386 NACAP1Q9BZK3 213 aa17.56■□□□□ 0.4
CBX3-202ENST00000396386 ANKRD2Q9GZV1 360 aa17.56■□□□□ 0.4
CBX3-202ENST00000396386 DENND2AQ9ULE3 1009 aa17.56■□□□□ 0.4
CBX3-202ENST00000396386 IQSEC3Q9UPP2 1182 aaPredicted RBP17.56■□□□□ 0.4
CBX3-202ENST00000396386 NPHP1O15259 732 aa17.56■□□□□ 0.4
CBX3-202ENST00000396386 LETM1O95202 739 aaPredicted RBP17.56■□□□□ 0.4
CBX3-202ENST00000396386 ADRA2BP18089 450 aa17.56■□□□□ 0.4
CBX3-202ENST00000396386 CCDC173Q0VFZ6 552 aa17.56■□□□□ 0.4
CBX3-202ENST00000396386 FAM173BQ6P4H8 233 aa17.56■□□□□ 0.4
CBX3-202ENST00000396386 FAM196AQ6ZSG2 479 aa17.56■□□□□ 0.4
CBX3-202ENST00000396386 TSPY26PQ9H489 355 aa17.56■□□□□ 0.4
CBX3-202ENST00000396386 ANGEL1Q9UNK9 670 aaKnown RBP17.56■□□□□ 0.4
CBX3-202ENST00000396386 CCDC88AQ3V6T2 1871 aa17.56■□□□□ 0.4
CBX3-202ENST00000396386 NEDD4P46934 1319 aa17.56■□□□□ 0.4
CBX3-202ENST00000396386 GSG1L2A8MUP6 293 aa17.55■□□□□ 0.4
CBX3-202ENST00000396386 SEMA3EO15041 775 aa17.55■□□□□ 0.4
CBX3-202ENST00000396386 CYP7A1P22680 504 aa17.55■□□□□ 0.4
CBX3-202ENST00000396386 SPATA32Q96LK8 384 aa17.55■□□□□ 0.4
CBX3-202ENST00000396386 SLC4A4Q9Y6R1 1079 aa17.55■□□□□ 0.4
CBX3-202ENST00000396386 SRCAPQ6ZRS2 3230 aa17.55■□□□□ 0.4
CBX3-202ENST00000396386 LAMB1P07942 1786 aa17.55■□□□□ 0.4
CBX3-202ENST00000396386 SH2B2O14492 632 aaPredicted RBP17.54■□□□□ 0.4
CBX3-202ENST00000396386 RXRBP28702 533 aa17.54■□□□□ 0.4
CBX3-202ENST00000396386 TDO2P48775 406 aa17.54■□□□□ 0.4
CBX3-202ENST00000396386 CYB5R4Q7L1T6 521 aa17.54■□□□□ 0.4
CBX3-202ENST00000396386 UPF1Q92900 1129 aaKnown RBP eCLIP17.54■□□□□ 0.41e-20■□□□□ 9.9
CBX3-202ENST00000396386 TMEM87BQ96K49 555 aa17.54■□□□□ 0.4
CBX3-202ENST00000396386 RAI14Q9P0K7 980 aa17.54■□□□□ 0.4
CBX3-202ENST00000396386 ABCF2Q9UG63 623 aa17.54■□□□□ 0.4
CBX3-202ENST00000396386 HPS5Q9UPZ3 1129 aa17.54■□□□□ 0.4
CBX3-202ENST00000396386 PDS5AQ29RF7 1337 aaKnown RBP17.54■□□□□ 0.4
CBX3-202ENST00000396386 B4E1Z4 1266 aa17.54■□□□□ 0.4
CBX3-202ENST00000396386 FOSBP53539 338 aa17.54■□□□□ 0.4
CBX3-202ENST00000396386 TPRNQ4KMQ1 711 aa17.54■□□□□ 0.4
CBX3-202ENST00000396386 KLHL34Q8N239 644 aa17.54■□□□□ 0.4
CBX3-202ENST00000396386 LEO1Q8WVC0 666 aaPredicted RBP17.54■□□□□ 0.4
CBX3-202ENST00000396386 FAM84BQ96KN1 310 aaPredicted RBP17.54■□□□□ 0.4
CBX3-202ENST00000396386 CNNM2Q9H8M5 875 aa17.54■□□□□ 0.4
CBX3-202ENST00000396386 CCDC24Q8N4L8 307 aa17.53■□□□□ 0.4
CBX3-202ENST00000396386 MIGA1Q8NAN2 632 aa17.53■□□□□ 0.4
CBX3-202ENST00000396386 WTIPA6NIX2 430 aaPredicted RBP17.52■□□□□ 0.4
CBX3-202ENST00000396386 CPLX1O14810 134 aa17.52■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms