RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 NASPP49321 788 aaPredicted RBP12.08□□□□□ -0.48
COL6A3-205ENST00000392004 UBE4AQ14139 1066 aa12.08□□□□□ -0.48
COL6A3-205ENST00000392004 FAM47AQ5JRC9 791 aa12.08□□□□□ -0.48
COL6A3-205ENST00000392004 ESYT1Q9BSJ8 1104 aa12.08□□□□□ -0.48
COL6A3-205ENST00000392004 CYP2D7A0A087X1C5 515 aa12.08□□□□□ -0.48
COL6A3-205ENST00000392004 B4E1Z4 1266 aa12.08□□□□□ -0.48
COL6A3-205ENST00000392004 PRKAB2O43741 272 aa12.08□□□□□ -0.48
COL6A3-205ENST00000392004 CHMLP26374 656 aa12.08□□□□□ -0.48
COL6A3-205ENST00000392004 RASSF7Q02833 373 aa12.08□□□□□ -0.48
COL6A3-205ENST00000392004 CIAPIN1Q6FI81 312 aa12.08□□□□□ -0.48
COL6A3-205ENST00000392004 SULF1Q8IWU6 871 aa12.08□□□□□ -0.48
COL6A3-205ENST00000392004 KBTBD3Q8NAB2 608 aa12.08□□□□□ -0.48
COL6A3-205ENST00000392004 HMG20BQ9P0W2 317 aa12.08□□□□□ -0.48
COL6A3-205ENST00000392004 SLC12A7Q9Y666 1083 aa12.08□□□□□ -0.48
COL6A3-205ENST00000392004 DISP2A7MBM2 1401 aa12.07□□□□□ -0.48
COL6A3-205ENST00000392004 PDE6AP16499 860 aa12.07□□□□□ -0.48
COL6A3-205ENST00000392004 BTDP43251 543 aa12.07□□□□□ -0.48
COL6A3-205ENST00000392004 SCARF1Q14162 830 aa12.07□□□□□ -0.48
COL6A3-205ENST00000392004 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.07□□□□□ -0.48
COL6A3-205ENST00000392004 CCDC125Q86Z20 511 aa12.07□□□□□ -0.48
COL6A3-205ENST00000392004 PDCL3Q9H2J4 239 aa12.07□□□□□ -0.48
COL6A3-205ENST00000392004 ZNF287Q9HBT7 754 aa12.07□□□□□ -0.48
COL6A3-205ENST00000392004 DDX49Q9Y6V7 483 aaKnown RBP12.07□□□□□ -0.48
COL6A3-205ENST00000392004 A0A0D9SFI3 127 aa12.07□□□□□ -0.48
COL6A3-205ENST00000392004 MYCP01106 439 aaPredicted RBP12.07□□□□□ -0.48
COL6A3-205ENST00000392004 TDRD3Q9H7E2 651 aaKnown RBP12.07□□□□□ -0.48
COL6A3-205ENST00000392004 PALD1Q9ULE6 856 aa12.07□□□□□ -0.48
COL6A3-205ENST00000392004 ZFYP08048 801 aaPredicted RBP12.07□□□□□ -0.48
COL6A3-205ENST00000392004 CTCFLQ8NI51 663 aaPredicted RBP12.07□□□□□ -0.48
COL6A3-205ENST00000392004 NEK1Q96PY6 1258 aa12.07□□□□□ -0.48
COL6A3-205ENST00000392004 MYL10Q9BUA6 226 aa12.07□□□□□ -0.48
COL6A3-205ENST00000392004 ECE2O60344 883 aa12.06□□□□□ -0.48
COL6A3-205ENST00000392004 TRIM22Q8IYM9 498 aa12.06□□□□□ -0.48
COL6A3-205ENST00000392004 SNX21Q969T3 373 aa12.06□□□□□ -0.48
COL6A3-205ENST00000392004 UIMC1Q96RL1 719 aa12.06□□□□□ -0.48
COL6A3-205ENST00000392004 LEMD3Q9Y2U8 911 aa12.06□□□□□ -0.48
COL6A3-205ENST00000392004 hCG_1642624A0A1W2PR95 340 aa12.06□□□□□ -0.48
COL6A3-205ENST00000392004 TXNRD3Q86VQ6 643 aa12.06□□□□□ -0.48
COL6A3-205ENST00000392004 CD209Q9NNX6 404 aa12.06□□□□□ -0.48
COL6A3-205ENST00000392004 TTC41PQ6P2S7 1318 aa12.06□□□□□ -0.48
COL6A3-205ENST00000392004 ZSCAN30Q86W11 494 aa12.06□□□□□ -0.48
COL6A3-205ENST00000392004 RTKN2Q8IZC4 609 aa12.06□□□□□ -0.48
COL6A3-205ENST00000392004 KAT14Q9H8E8 782 aa12.05□□□□□ -0.48
COL6A3-205ENST00000392004 MCAMP43121 646 aa12.05□□□□□ -0.48
COL6A3-205ENST00000392004 RABEP1Q15276 862 aa12.05□□□□□ -0.48
COL6A3-205ENST00000392004 SOGA3Q5TF21 947 aa12.05□□□□□ -0.48
COL6A3-205ENST00000392004 RNF41Q9H4P4 317 aaPredicted RBP12.05□□□□□ -0.48
COL6A3-205ENST00000392004 KLF18A0A0U1RQI7 1052 aa12.05□□□□□ -0.48
COL6A3-205ENST00000392004 FIBPO43427 364 aa12.05□□□□□ -0.48
COL6A3-205ENST00000392004 GSPT1P15170 499 aaKnown RBP12.05□□□□□ -0.48
COL6A3-205ENST00000392004 TBC1D16Q8TBP0 767 aa12.05□□□□□ -0.48
COL6A3-205ENST00000392004 APPBP2Q92624 585 aa12.05□□□□□ -0.48
COL6A3-205ENST00000392004 CPXCR1Q8N123 301 aa12.04□□□□□ -0.48
COL6A3-205ENST00000392004 DCPSQ96C86 337 aaKnown RBP12.04□□□□□ -0.48
COL6A3-205ENST00000392004 PNPLA7Q6ZV29 1317 aa12.04□□□□□ -0.48
COL6A3-205ENST00000392004 USP17L3A6NCW0 530 aa12.04□□□□□ -0.48
COL6A3-205ENST00000392004 USP17L4A6NCW7 530 aa12.04□□□□□ -0.48
COL6A3-205ENST00000392004 GOLGA8AA7E2F4 631 aa12.04□□□□□ -0.48
COL6A3-205ENST00000392004 ATP5JP18859 108 aa12.04□□□□□ -0.48
COL6A3-205ENST00000392004 TRIM28Q13263 835 aaKnown RBP12.04□□□□□ -0.48
COL6A3-205ENST00000392004 LARP1BQ659C4 914 aaKnown RBP12.04□□□□□ -0.48
COL6A3-205ENST00000392004 ILDR2Q71H61 639 aa12.04□□□□□ -0.48
COL6A3-205ENST00000392004 USP17L1Q7RTZ2 530 aa12.04□□□□□ -0.48
COL6A3-205ENST00000392004 SLC51AQ86UW1 340 aa12.04□□□□□ -0.48
COL6A3-205ENST00000392004 NCOA7Q8NI08 942 aa12.04□□□□□ -0.48
COL6A3-205ENST00000392004 BICD2Q8TD16 824 aa12.04□□□□□ -0.48
COL6A3-205ENST00000392004 SLC16A10Q8TF71 515 aa12.04□□□□□ -0.48
COL6A3-205ENST00000392004 PIH1D3Q9NQM4 214 aaKnown RBP12.04□□□□□ -0.48
COL6A3-205ENST00000392004 FMN2Q9NZ56 1722 aa12.04□□□□□ -0.48
COL6A3-205ENST00000392004 TNNI2P48788 182 aa12.04□□□□□ -0.48
COL6A3-205ENST00000392004 KRT32Q14532 448 aa12.04□□□□□ -0.48
COL6A3-205ENST00000392004 SPICE1Q8N0Z3 855 aa12.04□□□□□ -0.48
COL6A3-205ENST00000392004 TBC1D22AQ8WUA7 517 aa12.04□□□□□ -0.48
COL6A3-205ENST00000392004 GPCPD1Q9NPB8 672 aa12.04□□□□□ -0.48
COL6A3-205ENST00000392004 XRN1Q8IZH2 1706 aaKnown RBP12.03□□□□□ -0.48
COL6A3-205ENST00000392004 CCDC171Q6TFL3 1326 aa12.03□□□□□ -0.48
COL6A3-205ENST00000392004 POLRMTO00411 1230 aaKnown RBP12.03□□□□□ -0.48
COL6A3-205ENST00000392004 TNIP1Q15025 636 aa12.03□□□□□ -0.48
COL6A3-205ENST00000392004 IFIT1BQ5T764 474 aaKnown RBP12.03□□□□□ -0.48
COL6A3-205ENST00000392004 SAMD7Q7Z3H4 446 aa12.03□□□□□ -0.48
COL6A3-205ENST00000392004 NLGN2Q8NFZ4 835 aa12.03□□□□□ -0.48
COL6A3-205ENST00000392004 CCDC43Q96MW1 224 aaKnown RBP12.03□□□□□ -0.48
COL6A3-205ENST00000392004 WTAPQ15007 396 aa12.03□□□□□ -0.48
COL6A3-205ENST00000392004 GAS2L3Q86XJ1 694 aa12.03□□□□□ -0.48
COL6A3-205ENST00000392004 ESR2Q92731 530 aa12.03□□□□□ -0.48
COL6A3-205ENST00000392004 FAM84BQ96KN1 310 aaPredicted RBP12.03□□□□□ -0.48
COL6A3-205ENST00000392004 BCL2L12Q9HB09 334 aa12.03□□□□□ -0.48
COL6A3-205ENST00000392004 LRP6O75581 1613 aa12.03□□□□□ -0.48
COL6A3-205ENST00000392004 USP17L8P0C7I0 530 aa12.03□□□□□ -0.48
COL6A3-205ENST00000392004 CATIPQ7Z7H3 387 aa12.03□□□□□ -0.48
COL6A3-205ENST00000392004 TTC6Q86TZ1 520 aa12.03□□□□□ -0.48
COL6A3-205ENST00000392004 NOC3LQ8WTT2 800 aaKnown RBP12.03□□□□□ -0.48
COL6A3-205ENST00000392004 K7ELQ4 463 aaPredicted RBP12.02□□□□□ -0.48
COL6A3-205ENST00000392004 GDF11O95390 407 aa12.02□□□□□ -0.48
COL6A3-205ENST00000392004 PLCG2P16885 1265 aa12.02□□□□□ -0.48
COL6A3-205ENST00000392004 XBP1P17861 261 aa12.02□□□□□ -0.48
COL6A3-205ENST00000392004 RBM25P49756 843 aaKnown RBP12.02□□□□□ -0.48
COL6A3-205ENST00000392004 HOMEZQ8IX15 550 aa12.02□□□□□ -0.48
COL6A3-205ENST00000392004 KAZALD1Q96I82 304 aa12.02□□□□□ -0.48
COL6A3-205ENST00000392004 CAMKK2Q96RR4 588 aa12.02□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms