RNA–Protein interactions for RNA: ENST00000377819.9

RTN3-206, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,937 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-206ENST00000377819 NBPF11Q86T75 865 aa11.91□□□□□ -0.5
RTN3-206ENST00000377819 ESR2Q92731 530 aa11.91□□□□□ -0.5
RTN3-206ENST00000377819 CHMP6Q96FZ7 201 aa11.91□□□□□ -0.5
RTN3-206ENST00000377819 NEK1Q96PY6 1258 aa11.91□□□□□ -0.5
RTN3-206ENST00000377819 TEX13AQ9BXU3 409 aaPredicted RBP11.91□□□□□ -0.5
RTN3-206ENST00000377819 A0A1B0GUL7 405 aa11.91□□□□□ -0.5
RTN3-206ENST00000377819 I3L4J1 428 aa11.91□□□□□ -0.5
RTN3-206ENST00000377819 AFMP43652 599 aa11.91□□□□□ -0.5
RTN3-206ENST00000377819 ZNF131P52739 623 aa11.91□□□□□ -0.5
RTN3-206ENST00000377819 PPP1R42Q7Z4L9 355 aa11.91□□□□□ -0.5
RTN3-206ENST00000377819 SDCCAG3Q96C92 435 aa11.91□□□□□ -0.5
RTN3-206ENST00000377819 CCDC122Q5T0U0 273 aa11.9□□□□□ -0.5
RTN3-206ENST00000377819 B4GALNT4Q76KP1 1039 aa11.9□□□□□ -0.5
RTN3-206ENST00000377819 PNMA2Q9UL42 364 aa11.9□□□□□ -0.5
RTN3-206ENST00000377819 IVNS1ABPQ9Y6Y0 642 aa11.9□□□□□ -0.5
RTN3-206ENST00000377819 CDC42BPAQ5VT25 1732 aa11.9□□□□□ -0.5
RTN3-206ENST00000377819 CALML3P27482 149 aa11.9□□□□□ -0.5
RTN3-206ENST00000377819 PHEXP78562 749 aa11.9□□□□□ -0.5
RTN3-206ENST00000377819 DBN1Q16643 649 aa11.9□□□□□ -0.5
RTN3-206ENST00000377819 CCDC93Q567U6 631 aa11.9□□□□□ -0.5
RTN3-206ENST00000377819 ANKLE2Q86XL3 938 aa11.9□□□□□ -0.5
RTN3-206ENST00000377819 CNGA4Q8IV77 575 aa11.9□□□□□ -0.5
RTN3-206ENST00000377819 BANK1Q8NDB2 785 aa11.9□□□□□ -0.5
RTN3-206ENST00000377819 CXorf38Q8TB03 319 aa11.9□□□□□ -0.5
RTN3-206ENST00000377819 A6NNZ2 444 aa11.9□□□□□ -0.5
RTN3-206ENST00000377819 UQCRFS1P1P0C7P4 283 aa11.9□□□□□ -0.5
RTN3-206ENST00000377819 RAP1GDS1P52306 607 aa11.9□□□□□ -0.5
RTN3-206ENST00000377819 TUBB8Q3ZCM7 444 aa11.9□□□□□ -0.5
RTN3-206ENST00000377819 MYD88Q99836 296 aa11.9□□□□□ -0.5
RTN3-206ENST00000377819 EIF2AQ9BY44 585 aaKnown RBP11.9□□□□□ -0.5
RTN3-206ENST00000377819 GOLGA6BA6NDN3 693 aa11.9□□□□□ -0.51
RTN3-206ENST00000377819 UBE3BQ7Z3V4 1068 aa11.9□□□□□ -0.51
RTN3-206ENST00000377819 SUFUQ9UMX1 484 aa11.9□□□□□ -0.51
RTN3-206ENST00000377819 NAPAP54920 295 aa11.89□□□□□ -0.51
RTN3-206ENST00000377819 NOP14P78316 857 aaKnown RBP11.89□□□□□ -0.51
RTN3-206ENST00000377819 ZNF569Q5MCW4 686 aa11.89□□□□□ -0.51
RTN3-206ENST00000377819 LIN9Q5TKA1 542 aa11.89□□□□□ -0.51
RTN3-206ENST00000377819 HHATQ5VTY9 493 aa11.89□□□□□ -0.51
RTN3-206ENST00000377819 FAM76AQ8TAV0 307 aa11.89□□□□□ -0.51
RTN3-206ENST00000377819 EXOC5O00471 708 aa11.89□□□□□ -0.51
RTN3-206ENST00000377819 WHAMMP3Q1A5X7 153 aa11.89□□□□□ -0.51
RTN3-206ENST00000377819 PHLDB3Q6NSJ2 640 aa11.89□□□□□ -0.51
RTN3-206ENST00000377819 HACE1Q8IYU2 909 aa11.89□□□□□ -0.51
RTN3-206ENST00000377819 CCDC8Q9H0W5 538 aaPredicted RBP11.89□□□□□ -0.51
RTN3-206ENST00000377819 SFMBT1Q9UHJ3 866 aa11.89□□□□□ -0.51
RTN3-206ENST00000377819 NUCB1Q02818 461 aa11.89□□□□□ -0.51
RTN3-206ENST00000377819 UVSSAQ2YD98 709 aa11.89□□□□□ -0.51
RTN3-206ENST00000377819 MPRIPQ6WCQ1 1025 aa11.89□□□□□ -0.51
RTN3-206ENST00000377819 KCNG4Q8TDN1 519 aa11.89□□□□□ -0.51
RTN3-206ENST00000377819 CAPZA3Q96KX2 299 aa11.89□□□□□ -0.51
RTN3-206ENST00000377819 ADCY5O95622 1261 aa11.89□□□□□ -0.51
RTN3-206ENST00000377819 SKILP12757 684 aa11.89□□□□□ -0.51
RTN3-206ENST00000377819 RFC4P35249 363 aa11.89□□□□□ -0.51
RTN3-206ENST00000377819 TMEM57Q8N5G2 664 aa11.89□□□□□ -0.51
RTN3-206ENST00000377819 IL27Q8NEV9 243 aa11.89□□□□□ -0.51
RTN3-206ENST00000377819 UBLCP1Q8WVY7 318 aaPredicted RBP11.89□□□□□ -0.51
RTN3-206ENST00000377819 ZHX1Q9UKY1 873 aaPredicted RBP11.89□□□□□ -0.51
RTN3-206ENST00000377819 GINS2Q9Y248 185 aa11.89□□□□□ -0.51
RTN3-206ENST00000377819 GNAT3A8MTJ3 354 aa11.88□□□□□ -0.51
RTN3-206ENST00000377819 NFE2L2Q16236 605 aa11.88□□□□□ -0.51
RTN3-206ENST00000377819 SPOUT1Q5T280 376 aaKnown RBP11.88□□□□□ -0.51
RTN3-206ENST00000377819 DKC1O60832 514 aaKnown RBP eCLIP11.88□□□□□ -0.51
RTN3-206ENST00000377819 IRX3P78415 501 aaPredicted RBP11.88□□□□□ -0.51
RTN3-206ENST00000377819 ST5P78524 1137 aa11.88□□□□□ -0.51
RTN3-206ENST00000377819 FAM160A1Q05DH4 1040 aa11.88□□□□□ -0.51
RTN3-206ENST00000377819 CASC4Q6P4E1 433 aa11.88□□□□□ -0.51
RTN3-206ENST00000377819 ZNF449Q6P9G9 518 aa11.88□□□□□ -0.51
RTN3-206ENST00000377819 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP11.88□□□□□ -0.51
RTN3-206ENST00000377819 HMGB3O15347 200 aaKnown RBP11.88□□□□□ -0.51
RTN3-206ENST00000377819 ZBTB43O43298 467 aa11.88□□□□□ -0.51
RTN3-206ENST00000377819 SMTNP53814 917 aa11.88□□□□□ -0.51
RTN3-206ENST00000377819 HEATR3Q7Z4Q2 680 aa11.88□□□□□ -0.51
RTN3-206ENST00000377819 PPANQ9NQ55 473 aaKnown RBP11.88□□□□□ -0.51
RTN3-206ENST00000377819 RNF8O76064 485 aa11.88□□□□□ -0.51
RTN3-206ENST00000377819 MX2P20592 715 aa11.88□□□□□ -0.51
RTN3-206ENST00000377819 LRRC43Q8N309 656 aa11.88□□□□□ -0.51
RTN3-206ENST00000377819 SPDYE1Q8NFV5 336 aaPredicted RBP11.88□□□□□ -0.51
RTN3-206ENST00000377819 CCDC124Q96CT7 223 aaKnown RBP11.88□□□□□ -0.51
RTN3-206ENST00000377819 CCDC68Q9H2F9 335 aa11.88□□□□□ -0.51
RTN3-206ENST00000377819 FRMD4BQ9Y2L6 1034 aa11.88□□□□□ -0.51
RTN3-206ENST00000377819 FAN1Q9Y2M0 1017 aa11.88□□□□□ -0.51
RTN3-206ENST00000377819 TRIM75PA6NK02 468 aa11.87□□□□□ -0.51
RTN3-206ENST00000377819 HARSP12081 509 aaKnown RBP11.87□□□□□ -0.51
RTN3-206ENST00000377819 RASSF2P50749 326 aa11.87□□□□□ -0.51
RTN3-206ENST00000377819 TTLL3Q9Y4R7 772 aa11.87□□□□□ -0.51
RTN3-206ENST00000377819 LMOD1P29536 600 aaPredicted RBP11.87□□□□□ -0.51
RTN3-206ENST00000377819 PPP4R1Q8TF05 950 aa11.87□□□□□ -0.51
RTN3-206ENST00000377819 SP4Q02446 784 aa11.87□□□□□ -0.51
RTN3-206ENST00000377819 VWA3BQ502W6 1294 aa11.87□□□□□ -0.51
RTN3-206ENST00000377819 IFIT1BQ5T764 474 aaKnown RBP11.87□□□□□ -0.51
RTN3-206ENST00000377819 LCA5Q86VQ0 697 aa11.87□□□□□ -0.51
RTN3-206ENST00000377819 OSCARQ8IYS5 282 aa11.87□□□□□ -0.51
RTN3-206ENST00000377819 GTF3C6Q969F1 213 aa11.87□□□□□ -0.51
RTN3-206ENST00000377819 CNNM2Q9H8M5 875 aa11.87□□□□□ -0.51
RTN3-206ENST00000377819 GOLGA8CPA6NN73 597 aa11.86□□□□□ -0.51
RTN3-206ENST00000377819 KRT5P13647 590 aa11.86□□□□□ -0.51
RTN3-206ENST00000377819 GNA11P29992 359 aa11.86□□□□□ -0.51
RTN3-206ENST00000377819 RAPGEF1Q13905 1077 aa11.86□□□□□ -0.51
RTN3-206ENST00000377819 JADE1Q6IE81 842 aa11.86□□□□□ -0.51
RTN3-206ENST00000377819 VEZTQ9HBM0 779 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms