RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 CCDC158Q5M9N0 1113 aa16.41■□□□□ 0.22
VPS28-202ENST00000377348 SPATA5Q8NB90 893 aa16.41■□□□□ 0.22
VPS28-202ENST00000377348 MTMR14Q8NCE2 650 aa16.41■□□□□ 0.22
VPS28-202ENST00000377348 DCTPP1Q9H773 170 aa16.41■□□□□ 0.22
VPS28-202ENST00000377348 SNRKQ9NRH2 765 aa16.41■□□□□ 0.22
VPS28-202ENST00000377348 SERPINA10Q9UK55 444 aa16.41■□□□□ 0.22
VPS28-202ENST00000377348 SALL1Q9NSC2 1324 aa16.41■□□□□ 0.22
VPS28-202ENST00000377348 CLRN2A0PK11 232 aa16.4■□□□□ 0.22
VPS28-202ENST00000377348 ZBTB22O15209 634 aa16.4■□□□□ 0.22
VPS28-202ENST00000377348 UQCRFS1P1P0C7P4 283 aa16.4■□□□□ 0.22
VPS28-202ENST00000377348 TBC1D9Q6ZT07 1266 aa16.4■□□□□ 0.22
VPS28-202ENST00000377348 SULF1Q8IWU6 871 aa16.4■□□□□ 0.22
VPS28-202ENST00000377348 CLASRPQ8N2M8 674 aaKnown RBP16.4■□□□□ 0.22
VPS28-202ENST00000377348 ZNF408Q9H9D4 720 aa16.4■□□□□ 0.22
VPS28-202ENST00000377348 ABCF2Q9UG63 623 aa16.4■□□□□ 0.22
VPS28-202ENST00000377348 SUGT1Q9Y2Z0 365 aa16.4■□□□□ 0.22
VPS28-202ENST00000377348 POLR2AP24928 1970 aaKnown RBP16.4■□□□□ 0.22
VPS28-202ENST00000377348 PDS5AQ29RF7 1337 aaKnown RBP16.4■□□□□ 0.22
VPS28-202ENST00000377348 LDHBP07195 334 aaKnown RBP16.39■□□□□ 0.21
VPS28-202ENST00000377348 DIXDC1Q155Q3 683 aa16.39■□□□□ 0.21
VPS28-202ENST00000377348 LRRCC1Q9C099 1032 aa16.39■□□□□ 0.21
VPS28-202ENST00000377348 PITPNM2Q9BZ72 1349 aa16.39■□□□□ 0.21
VPS28-202ENST00000377348 TMEM88BA6NKF7 163 aa16.38■□□□□ 0.21
VPS28-202ENST00000377348 CELF2O95319 508 aaKnown RBP16.38■□□□□ 0.21
VPS28-202ENST00000377348 PRAMEF18Q5VWM3 479 aa16.38■□□□□ 0.21
VPS28-202ENST00000377348 CST9Q5W186 159 aa16.38■□□□□ 0.21
VPS28-202ENST00000377348 TEKT1Q969V4 418 aa16.38■□□□□ 0.21
VPS28-202ENST00000377348 TDRD3Q9H7E2 651 aaKnown RBP16.38■□□□□ 0.21
VPS28-202ENST00000377348 VEZTQ9HBM0 779 aa16.38■□□□□ 0.21
VPS28-202ENST00000377348 NDUFB9Q9Y6M9 179 aa16.38■□□□□ 0.21
VPS28-202ENST00000377348 MAST3O60307 1309 aa16.38■□□□□ 0.21
VPS28-202ENST00000377348 IFIT2P09913 472 aaKnown RBP16.37■□□□□ 0.21
VPS28-202ENST00000377348 ZAP70P43403 619 aa16.37■□□□□ 0.21
VPS28-202ENST00000377348 HDLBPQ00341 1268 aaKnown RBP16.37■□□□□ 0.21
VPS28-202ENST00000377348 ZGPATQ8N5A5 531 aaKnown RBP16.37■□□□□ 0.21
VPS28-202ENST00000377348 ZNF512BQ96KM6 892 aaPredicted RBP16.37■□□□□ 0.21
VPS28-202ENST00000377348 CREBZFQ9NS37 354 aa16.37■□□□□ 0.21
VPS28-202ENST00000377348 MYO1BO43795 1136 aa16.36■□□□□ 0.21
VPS28-202ENST00000377348 APOBEC3HQ6NTF7 200 aaKnown RBP16.36■□□□□ 0.21
VPS28-202ENST00000377348 HHIPL2Q6UWX4 724 aa16.36■□□□□ 0.21
VPS28-202ENST00000377348 CDCA5Q96FF9 252 aa16.36■□□□□ 0.21
VPS28-202ENST00000377348 ZDHHC15Q96MV8 337 aa16.36■□□□□ 0.21
VPS28-202ENST00000377348 ZNF70Q9UC06 446 aaPredicted RBP16.36■□□□□ 0.21
VPS28-202ENST00000377348 DAGLAQ9Y4D2 1042 aa16.36■□□□□ 0.21
VPS28-202ENST00000377348 CYP2E1P05181 493 aaPredicted RBP16.35■□□□□ 0.21
VPS28-202ENST00000377348 CACNB3P54284 484 aa16.35■□□□□ 0.21
VPS28-202ENST00000377348 MECOMQ03112 1051 aa16.35■□□□□ 0.21
VPS28-202ENST00000377348 AAMPQ13685 434 aa16.35■□□□□ 0.21
VPS28-202ENST00000377348 SPDYE2Q495Y8 402 aa16.35■□□□□ 0.21
VPS28-202ENST00000377348 SPTY2D1Q68D10 685 aaPredicted RBP16.35■□□□□ 0.21
VPS28-202ENST00000377348 ERICH6Q7L0X2 663 aa16.35■□□□□ 0.21
VPS28-202ENST00000377348 DZIP1Q86YF9 867 aaKnown RBP16.35■□□□□ 0.21
VPS28-202ENST00000377348 APOBEC3FQ8IUX4 373 aaKnown RBP16.35■□□□□ 0.21
VPS28-202ENST00000377348 ZNF384Q8TF68 577 aa16.35■□□□□ 0.21
VPS28-202ENST00000377348 MRIQ9BWK5 157 aa16.35■□□□□ 0.21
VPS28-202ENST00000377348 AKAP11Q9UKA4 1901 aa16.35■□□□□ 0.21
VPS28-202ENST00000377348 TRPM7Q96QT4 1865 aa16.34■□□□□ 0.21
VPS28-202ENST00000377348 HDAC1Q13547 482 aaPredicted RBP16.34■□□□□ 0.21
VPS28-202ENST00000377348 PIH1D3Q9NQM4 214 aaKnown RBP16.34■□□□□ 0.21
VPS28-202ENST00000377348 RAI14Q9P0K7 980 aa16.34■□□□□ 0.21
VPS28-202ENST00000377348 LRP2BPQ9P2M1 347 aa16.34■□□□□ 0.21
VPS28-202ENST00000377348 MKRN1Q9UHC7 482 aaKnown RBP16.34■□□□□ 0.21
VPS28-202ENST00000377348 ABT1Q9ULW3 272 aaKnown RBP16.34■□□□□ 0.21
VPS28-202ENST00000377348 TCP10L2B9ZVM9 353 aa16.33■□□□□ 0.2
VPS28-202ENST00000377348 DNAJC5GQ8N7S2 189 aa16.33■□□□□ 0.2
VPS28-202ENST00000377348 NSUN4Q96CB9 384 aaKnown RBP16.33■□□□□ 0.2
VPS28-202ENST00000377348 DEFB129Q9H1M3 183 aa16.33■□□□□ 0.2
VPS28-202ENST00000377348 ANTXR1Q9H6X2 564 aa16.33■□□□□ 0.2
VPS28-202ENST00000377348 PCNTO95613 3336 aa16.33■□□□□ 0.2
VPS28-202ENST00000377348 ECM29Q5VYK3 1845 aa16.33■□□□□ 0.2
VPS28-202ENST00000377348 GAKO14976 1311 aa16.32■□□□□ 0.2
VPS28-202ENST00000377348 IGHDP01880 384 aa16.32■□□□□ 0.2
VPS28-202ENST00000377348 DNAJC2Q99543 621 aaKnown RBP16.32■□□□□ 0.2
VPS28-202ENST00000377348 GBA2Q9HCG7 927 aaPredicted RBP16.32■□□□□ 0.2
VPS28-202ENST00000377348 MROH7-TTC4A0A0A0MT08 1334 aa16.31■□□□□ 0.2
VPS28-202ENST00000377348 RASA3Q14644 834 aa16.31■□□□□ 0.2
VPS28-202ENST00000377348 TSHZ3Q63HK5 1081 aa16.31■□□□□ 0.2
VPS28-202ENST00000377348 CDC42EP5Q6NZY7 148 aa16.31■□□□□ 0.2
VPS28-202ENST00000377348 CDAN1Q8IWY9 1227 aa16.31■□□□□ 0.2
VPS28-202ENST00000377348 EDC3Q96F86 508 aaKnown RBP16.31■□□□□ 0.2
VPS28-202ENST00000377348 BOLA2Q9H3K6 86 aa16.31■□□□□ 0.2
VPS28-202ENST00000377348 TLL2Q9Y6L7 1015 aa16.31■□□□□ 0.2
VPS28-202ENST00000377348 BTDP43251 543 aa16.3■□□□□ 0.2
VPS28-202ENST00000377348 ANKRD45Q5TZF3 282 aa16.3■□□□□ 0.2
VPS28-202ENST00000377348 MOB2Q70IA6 237 aa16.3■□□□□ 0.2
VPS28-202ENST00000377348 SAPCD2Q86UD0 394 aa16.3■□□□□ 0.2
VPS28-202ENST00000377348 OTUD7AQ8TE49 926 aaPredicted RBP16.3■□□□□ 0.2
VPS28-202ENST00000377348 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.3■□□□□ 0.2
VPS28-202ENST00000377348 GCC1Q96CN9 775 aa16.3■□□□□ 0.2
VPS28-202ENST00000377348 KLRG1Q96E93 195 aa16.3■□□□□ 0.2
VPS28-202ENST00000377348 RWDD1Q9H446 243 aaPredicted RBP16.3■□□□□ 0.2
VPS28-202ENST00000377348 USP40Q9NVE5 1235 aa16.3■□□□□ 0.2
VPS28-202ENST00000377348 FZD1Q9UP38 647 aa16.3■□□□□ 0.2
VPS28-202ENST00000377348 MYH2Q9UKX2 1941 aa16.29■□□□□ 0.2
VPS28-202ENST00000377348 CNTNAP1P78357 1384 aa16.29■□□□□ 0.2
VPS28-202ENST00000377348 RASSF10A6NK89 507 aa16.29■□□□□ 0.2
VPS28-202ENST00000377348 IDH1O75874 414 aaKnown RBP16.29■□□□□ 0.2
VPS28-202ENST00000377348 ATP5JP18859 108 aa16.29■□□□□ 0.2
VPS28-202ENST00000377348 NFIAQ12857 509 aa16.29■□□□□ 0.2
VPS28-202ENST00000377348 TNFAIP1Q13829 316 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms