RNA–Protein interactions for RNA: ENST00000375340.10

SMC1A-202, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 1 (best) BASIC

Gene SMC1A, Length 9,930 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-202ENST00000375340 ZNF853P0CG23 659 aa7.47□□□□□ -1.21
SMC1A-202ENST00000375340 PPARDQ03181 441 aa7.47□□□□□ -1.21
SMC1A-202ENST00000375340 MAATS1Q7Z4T9 603 aa7.47□□□□□ -1.21
SMC1A-202ENST00000375340 BRAPQ7Z569 592 aa7.47□□□□□ -1.21
SMC1A-202ENST00000375340 ZSWIM6Q9HCJ5 1215 aa7.47□□□□□ -1.21
SMC1A-202ENST00000375340 SCRN1Q12765 414 aa7.47□□□□□ -1.21
SMC1A-202ENST00000375340 C11orf57Q6ZUT1 292 aaPredicted RBP7.47□□□□□ -1.21
SMC1A-202ENST00000375340 ZCRB1Q8TBF4 217 aaKnown RBP7.47□□□□□ -1.21
SMC1A-202ENST00000375340 CCDC113Q9H0I3 377 aa7.47□□□□□ -1.21
SMC1A-202ENST00000375340 ARFGAP3Q9NP61 516 aa7.47□□□□□ -1.21
SMC1A-202ENST00000375340 TSPY2A6NKD2 308 aa7.47□□□□□ -1.21
SMC1A-202ENST00000375340 COBLO75128 1261 aa7.47□□□□□ -1.21
SMC1A-202ENST00000375340 EVCP57679 992 aa7.47□□□□□ -1.21
SMC1A-202ENST00000375340 SPTY2D1Q68D10 685 aaPredicted RBP7.47□□□□□ -1.21
SMC1A-202ENST00000375340 ALS2CR12Q96Q35 445 aa7.47□□□□□ -1.21
SMC1A-202ENST00000375340 hCG_1642624A0A1W2PR95 340 aa7.46□□□□□ -1.21
SMC1A-202ENST00000375340 ZNF202O95125 648 aa7.46□□□□□ -1.21
SMC1A-202ENST00000375340 PIP4K2BP78356 416 aa7.46□□□□□ -1.21
SMC1A-202ENST00000375340 BEND3Q5T5X7 828 aa7.46□□□□□ -1.21
SMC1A-202ENST00000375340 ZNF790Q6PG37 636 aa7.46□□□□□ -1.21
SMC1A-202ENST00000375340 CMTR1Q8N1G2 835 aaKnown RBP7.46□□□□□ -1.21
SMC1A-202ENST00000375340 LUC7LQ9NQ29 371 aaKnown RBP7.46□□□□□ -1.21
SMC1A-202ENST00000375340 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP7.46□□□□□ -1.211e-9■■■■□ 24.7
SMC1A-202ENST00000375340 CLIC4Q9Y696 253 aa7.46□□□□□ -1.21
SMC1A-202ENST00000375340 NEURL1BA8MQ27 555 aa7.46□□□□□ -1.21
SMC1A-202ENST00000375340 MBD4O95243 580 aa7.46□□□□□ -1.21
SMC1A-202ENST00000375340 KANK3Q6NY19 840 aa7.46□□□□□ -1.21
SMC1A-202ENST00000375340 GPATCH11Q8N954 259 aa7.46□□□□□ -1.21
SMC1A-202ENST00000375340 MAGEB6P1A0A0J9YX57 407 aa7.46□□□□□ -1.22
SMC1A-202ENST00000375340 CTAGE15A4D2H0 777 aa7.46□□□□□ -1.22
SMC1A-202ENST00000375340 ADAMTS2O95450 1211 aa7.46□□□□□ -1.22
SMC1A-202ENST00000375340 CTAGE8P0CG41 777 aa7.46□□□□□ -1.22
SMC1A-202ENST00000375340 MTX1Q13505 466 aa7.46□□□□□ -1.22
SMC1A-202ENST00000375340 CTAGE6Q86UF2 777 aa7.46□□□□□ -1.22
SMC1A-202ENST00000375340 CTAGE4Q8IX94 777 aa7.46□□□□□ -1.22
SMC1A-202ENST00000375340 SMARCC1Q92922 1105 aaPredicted RBP7.46□□□□□ -1.22
SMC1A-202ENST00000375340 XPO4Q9C0E2 1151 aaKnown RBP7.46□□□□□ -1.22
SMC1A-202ENST00000375340 DNAJC21Q5F1R6 531 aaKnown RBP7.46□□□□□ -1.22
SMC1A-202ENST00000375340 SSH3Q8TE77 659 aa7.46□□□□□ -1.22
SMC1A-202ENST00000375340 KCNJ14Q9UNX9 436 aa7.46□□□□□ -1.22
SMC1A-202ENST00000375340 TRIM21P19474 475 aaKnown RBP7.46□□□□□ -1.22
SMC1A-202ENST00000375340 ERO1AQ96HE7 468 aa7.46□□□□□ -1.22
SMC1A-202ENST00000375340 CDC42BPGQ6DT37 1551 aa7.46□□□□□ -1.22
SMC1A-202ENST00000375340 VWA3AA6NCI4 1184 aa7.46□□□□□ -1.22
SMC1A-202ENST00000375340 MYO1BO43795 1136 aa7.46□□□□□ -1.22
SMC1A-202ENST00000375340 ZFYP08048 801 aaPredicted RBP7.46□□□□□ -1.22
SMC1A-202ENST00000375340 TERF1P54274 439 aa7.46□□□□□ -1.22
SMC1A-202ENST00000375340 SYNRGQ9UMZ2 1314 aa7.46□□□□□ -1.22
SMC1A-202ENST00000375340 KRI1Q8N9T8 703 aaKnown RBP7.46□□□□□ -1.22
SMC1A-202ENST00000375340 GCKRQ14397 625 aa7.45□□□□□ -1.22
SMC1A-202ENST00000375340 FAM89AQ96GI7 184 aa7.45□□□□□ -1.22
SMC1A-202ENST00000375340 SLC52A2Q9HAB3 445 aa7.45□□□□□ -1.22
SMC1A-202ENST00000375340 FAM170AA1A519 330 aa7.45□□□□□ -1.22
SMC1A-202ENST00000375340 POLR2DO15514 142 aaKnown RBP7.45□□□□□ -1.22
SMC1A-202ENST00000375340 MCM3P25205 808 aa7.45□□□□□ -1.22
SMC1A-202ENST00000375340 MAPK8IP1Q9UQF2 711 aa7.45□□□□□ -1.22
SMC1A-202ENST00000375340 MED14O60244 1454 aa7.45□□□□□ -1.22
SMC1A-202ENST00000375340 MACROD2A1Z1Q3 448 aa7.45□□□□□ -1.22
SMC1A-202ENST00000375340 ATP2C2O75185 946 aa7.45□□□□□ -1.22
SMC1A-202ENST00000375340 GCP02774 474 aa7.45□□□□□ -1.22
SMC1A-202ENST00000375340 ZSCAN29Q8IWY8 852 aaPredicted RBP7.45□□□□□ -1.22
SMC1A-202ENST00000375340 ZNF444Q8N0Y2 327 aaPredicted RBP7.45□□□□□ -1.22
SMC1A-202ENST00000375340 KLHL34Q8N239 644 aa7.45□□□□□ -1.22
SMC1A-202ENST00000375340 CARD6Q9BX69 1037 aa7.45□□□□□ -1.22
SMC1A-202ENST00000375340 PRM3Q9NNZ6 103 aa7.45□□□□□ -1.22
SMC1A-202ENST00000375340 CCDC40Q4G0X9 1142 aa7.45□□□□□ -1.22
SMC1A-202ENST00000375340 INO80Q9ULG1 1556 aaPredicted RBP7.45□□□□□ -1.22
SMC1A-202ENST00000375340 ADKP55263 362 aaKnown RBP7.45□□□□□ -1.22
SMC1A-202ENST00000375340 MYL5Q02045 173 aa7.45□□□□□ -1.22
SMC1A-202ENST00000375340 ARID5AQ03989 594 aa7.45□□□□□ -1.22
SMC1A-202ENST00000375340 TTC6Q86TZ1 520 aa7.45□□□□□ -1.22
SMC1A-202ENST00000375340 EAF2Q96CJ1 260 aaPredicted RBP7.45□□□□□ -1.22
SMC1A-202ENST00000375340 CTAGE1Q96RT6 745 aa7.45□□□□□ -1.22
SMC1A-202ENST00000375340 RTL9Q8NET4 1388 aa7.45□□□□□ -1.22
SMC1A-202ENST00000375340 ROBO2Q9HCK4 1378 aa7.45□□□□□ -1.22
SMC1A-202ENST00000375340 CNNM2Q9H8M5 875 aa7.45□□□□□ -1.22
SMC1A-202ENST00000375340 USO1O60763 962 aaKnown RBP7.45□□□□□ -1.22
SMC1A-202ENST00000375340 RABEP2Q9H5N1 569 aa7.45□□□□□ -1.22
SMC1A-202ENST00000375340 KCNH3Q9ULD8 1083 aa7.45□□□□□ -1.22
SMC1A-202ENST00000375340 IRS4O14654 1257 aaPredicted RBP7.45□□□□□ -1.22
SMC1A-202ENST00000375340 ZPR1O75312 459 aa7.45□□□□□ -1.22
SMC1A-202ENST00000375340 NDUFA8P51970 172 aa7.45□□□□□ -1.22
SMC1A-202ENST00000375340 BLZF1Q9H2G9 400 aa7.45□□□□□ -1.22
SMC1A-202ENST00000375340 BMP2KQ9NSY1 1161 aaPredicted RBP7.45□□□□□ -1.22
SMC1A-202ENST00000375340 AATKQ6ZMQ8 1374 aa7.45□□□□□ -1.22
SMC1A-202ENST00000375340 AKR1B15C9JRZ8 316 aaPredicted RBP7.44□□□□□ -1.22
SMC1A-202ENST00000375340 GPAA1O43292 621 aa7.44□□□□□ -1.22
SMC1A-202ENST00000375340 UQCRFS1P1P0C7P4 283 aa7.44□□□□□ -1.22
SMC1A-202ENST00000375340 ITGA6P23229 1130 aa7.44□□□□□ -1.22
SMC1A-202ENST00000375340 SSR1P43307 286 aaKnown RBP7.44□□□□□ -1.22
SMC1A-202ENST00000375340 DESI2Q9BSY9 194 aa7.44□□□□□ -1.22
SMC1A-202ENST00000375340 DDX21Q9NR30 783 aaKnown RBP eCLIP7.44□□□□□ -1.22
SMC1A-202ENST00000375340 SHPRHQ149N8 1683 aa7.44□□□□□ -1.22
SMC1A-202ENST00000375340 TMEM132AQ24JP5 1023 aa7.44□□□□□ -1.22
SMC1A-202ENST00000375340 LRRC8AQ8IWT6 810 aa7.44□□□□□ -1.22
SMC1A-202ENST00000375340 ZNF652Q9Y2D9 606 aa7.44□□□□□ -1.22
SMC1A-202ENST00000375340 ZDHHC9Q9Y397 364 aa7.44□□□□□ -1.22
SMC1A-202ENST00000375340 CEP112Q8N8E3 955 aa7.44□□□□□ -1.22
SMC1A-202ENST00000375340 LLPHQ9BRT6 129 aaKnown RBP7.44□□□□□ -1.22
SMC1A-202ENST00000375340 HSF2BPO75031 334 aa7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms