RNA–Protein interactions for RNA: ENST00000372246.7

ATG4A-204, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4A, Length 2,501 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-204ENST00000372246 BMS1Q14692 1282 aaKnown RBP6.3□□□□□ -1.4
ATG4A-204ENST00000372246 ZNF827Q17R98 1081 aa6.3□□□□□ -1.4
ATG4A-204ENST00000372246 TRIM65Q6PJ69 517 aa6.3□□□□□ -1.4
ATG4A-204ENST00000372246 CCDC73Q6ZRK6 1079 aa6.3□□□□□ -1.4
ATG4A-204ENST00000372246 CCDC191Q8NCU4 936 aa6.3□□□□□ -1.4
ATG4A-204ENST00000372246 NSUN7Q8NE18 718 aaKnown RBP6.3□□□□□ -1.4
ATG4A-204ENST00000372246 NGDNQ8NEJ9 315 aaKnown RBP6.3□□□□□ -1.4
ATG4A-204ENST00000372246 UBXN4Q92575 508 aa6.3□□□□□ -1.4
ATG4A-204ENST00000372246 HSD3B7Q9H2F3 369 aa6.3□□□□□ -1.4
ATG4A-204ENST00000372246 PUF60Q9UHX1 559 aaKnown RBP6.3□□□□□ -1.4
ATG4A-204ENST00000372246 TMEM131LA2VDJ0 1609 aa6.3□□□□□ -1.4
ATG4A-204ENST00000372246 KIF28PB7ZC32 967 aa6.29□□□□□ -1.4
ATG4A-204ENST00000372246 ZRANB2O95218 330 aaKnown RBP eCLIP6.29□□□□□ -1.4
ATG4A-204ENST00000372246 SFPQP23246 707 aaKnown RBP eCLIP6.29□□□□□ -1.4
ATG4A-204ENST00000372246 CDC27P30260 824 aa6.29□□□□□ -1.4
ATG4A-204ENST00000372246 EIF4A1P60842 406 aaKnown RBP6.29□□□□□ -1.4
ATG4A-204ENST00000372246 PPARDQ03181 441 aa6.29□□□□□ -1.4
ATG4A-204ENST00000372246 SLC39A6Q13433 755 aa6.29□□□□□ -1.4
ATG4A-204ENST00000372246 TOGARAM2Q6ZUX3 1019 aa6.29□□□□□ -1.4
ATG4A-204ENST00000372246 REXO1L1PQ8IX06 675 aa6.29□□□□□ -1.4
ATG4A-204ENST00000372246 PDILTQ8N807 584 aa6.29□□□□□ -1.4
ATG4A-204ENST00000372246 RGS22Q8NE09 1264 aa6.29□□□□□ -1.4
ATG4A-204ENST00000372246 MNS1Q8NEH6 495 aa6.29□□□□□ -1.4
ATG4A-204ENST00000372246 DBNDD2Q9BQY9 259 aa6.29□□□□□ -1.4
ATG4A-204ENST00000372246 TM6SF1Q9BZW5 370 aa6.29□□□□□ -1.4
ATG4A-204ENST00000372246 XRN1Q8IZH2 1706 aaKnown RBP6.29□□□□□ -1.4
ATG4A-204ENST00000372246 MAP3K5Q99683 1374 aa6.29□□□□□ -1.4
ATG4A-204ENST00000372246 MROH7-TTC4A0A0A0MT08 1334 aa6.29□□□□□ -1.4
ATG4A-204ENST00000372246 NEDD4P46934 1319 aa6.29□□□□□ -1.4
ATG4A-204ENST00000372246 FDPSP14324 419 aaKnown RBP6.29□□□□□ -1.4
ATG4A-204ENST00000372246 PDCP20941 246 aa6.29□□□□□ -1.4
ATG4A-204ENST00000372246 PSMA5P28066 241 aa6.29□□□□□ -1.4
ATG4A-204ENST00000372246 TFCP2Q12800 502 aa6.29□□□□□ -1.4
ATG4A-204ENST00000372246 PNOCQ13519 176 aa6.29□□□□□ -1.4
ATG4A-204ENST00000372246 MCM6Q14566 821 aa6.29□□□□□ -1.4
ATG4A-204ENST00000372246 NCAPHQ15003 741 aa6.29□□□□□ -1.4
ATG4A-204ENST00000372246 CYB5RLQ6IPT4 315 aa6.29□□□□□ -1.4
ATG4A-204ENST00000372246 SARM1Q6SZW1 724 aa6.29□□□□□ -1.4
ATG4A-204ENST00000372246 TMCO3Q6UWJ1 677 aa6.29□□□□□ -1.4
ATG4A-204ENST00000372246 TRMT44Q8IYL2 757 aaKnown RBP6.29□□□□□ -1.4
ATG4A-204ENST00000372246 CEP57L1Q8IYX8 460 aa6.29□□□□□ -1.4
ATG4A-204ENST00000372246 KCNB2Q92953 911 aa6.29□□□□□ -1.4
ATG4A-204ENST00000372246 GDAP1L1Q96MZ0 367 aa6.29□□□□□ -1.4
ATG4A-204ENST00000372246 CLIC6Q96NY7 704 aa6.29□□□□□ -1.4
ATG4A-204ENST00000372246 L2HGDHQ9H9P8 463 aa6.29□□□□□ -1.4
ATG4A-204ENST00000372246 CALCOCO1Q9P1Z2 691 aa6.29□□□□□ -1.4
ATG4A-204ENST00000372246 DBNLQ9UJU6 430 aaKnown RBP6.29□□□□□ -1.4
ATG4A-204ENST00000372246 GTF3C5Q9Y5Q8 519 aaPredicted RBP6.29□□□□□ -1.4
ATG4A-204ENST00000372246 PARP3Q9Y6F1 533 aa6.29□□□□□ -1.4
ATG4A-204ENST00000372246 CLTCQ00610 1675 aaKnown RBP6.28□□□□□ -1.4
ATG4A-204ENST00000372246 PPP1R3GB7ZBB8 358 aa6.28□□□□□ -1.4
ATG4A-204ENST00000372246 BHMG1C9JSJ3 638 aaPredicted RBP6.28□□□□□ -1.4
ATG4A-204ENST00000372246 ATP5J2-PTCD1G3V325 749 aa6.28□□□□□ -1.4
ATG4A-204ENST00000372246 PTCD1O75127 700 aaKnown RBP6.28□□□□□ -1.4
ATG4A-204ENST00000372246 WDHD1O75717 1129 aaPredicted RBP6.28□□□□□ -1.4
ATG4A-204ENST00000372246 CDC25BP30305 580 aa6.28□□□□□ -1.4
ATG4A-204ENST00000372246 FAM160A1Q05DH4 1040 aa6.28□□□□□ -1.4
ATG4A-204ENST00000372246 PDE4BQ07343 736 aa6.28□□□□□ -1.4
ATG4A-204ENST00000372246 SMC1AQ14683 1233 aaKnown RBP6.28□□□□□ -1.4
ATG4A-204ENST00000372246 LONRF3Q496Y0 759 aa6.28□□□□□ -1.4
ATG4A-204ENST00000372246 C6orf132Q5T0Z8 1188 aa6.28□□□□□ -1.4
ATG4A-204ENST00000372246 TAF3Q5VWG9 929 aa6.28□□□□□ -1.4
ATG4A-204ENST00000372246 PPP1R3FQ6ZSY5 799 aaPredicted RBP6.28□□□□□ -1.4
ATG4A-204ENST00000372246 GRAMD1CQ8IYS0 662 aa6.28□□□□□ -1.4
ATG4A-204ENST00000372246 FMR1NBQ8N0W7 255 aaPredicted RBP6.28□□□□□ -1.4
ATG4A-204ENST00000372246 CPLX3Q8WVH0 158 aa6.28□□□□□ -1.4
ATG4A-204ENST00000372246 PARD6BQ9BYG5 372 aa6.28□□□□□ -1.4
ATG4A-204ENST00000372246 ZNF609O15014 1411 aa6.28□□□□□ -1.4
ATG4A-204ENST00000372246 TTC41PQ6P2S7 1318 aa6.28□□□□□ -1.4
ATG4A-204ENST00000372246 IGSF1Q8N6C5 1336 aa6.28□□□□□ -1.4
ATG4A-204ENST00000372246 VWA3AA6NCI4 1184 aa6.28□□□□□ -1.4
ATG4A-204ENST00000372246 MYO1CO00159 1063 aa6.28□□□□□ -1.4
ATG4A-204ENST00000372246 TADA3O75528 432 aa6.28□□□□□ -1.4
ATG4A-204ENST00000372246 HOXC9P31274 260 aa6.28□□□□□ -1.4
ATG4A-204ENST00000372246 TNNT3P45378 269 aaPredicted RBP6.28□□□□□ -1.4
ATG4A-204ENST00000372246 GNG11P61952 73 aa6.28□□□□□ -1.4
ATG4A-204ENST00000372246 ETF1P62495 437 aaKnown RBP6.28□□□□□ -1.4
ATG4A-204ENST00000372246 FANCCQ00597 558 aa6.28□□□□□ -1.4
ATG4A-204ENST00000372246 G3BP1Q13283 466 aaKnown RBP eCLIP6.28□□□□□ -1.4
ATG4A-204ENST00000372246 MTX1Q13505 466 aa6.28□□□□□ -1.4
ATG4A-204ENST00000372246 ZSCAN26Q16670 478 aa6.28□□□□□ -1.4
ATG4A-204ENST00000372246 KCTD19Q17RG1 926 aaPredicted RBP6.28□□□□□ -1.4
ATG4A-204ENST00000372246 CFAP100Q494V2 611 aa6.28□□□□□ -1.4
ATG4A-204ENST00000372246 DHX58Q96C10 678 aa6.28□□□□□ -1.4
ATG4A-204ENST00000372246 LZTFL1Q9NQ48 299 aa6.28□□□□□ -1.4
ATG4A-204ENST00000372246 SNRKQ9NRH2 765 aa6.28□□□□□ -1.4
ATG4A-204ENST00000372246 INTS13Q9NVM9 706 aa6.28□□□□□ -1.4
ATG4A-204ENST00000372246 ANO10Q9NW15 660 aa6.28□□□□□ -1.4
ATG4A-204ENST00000372246 RCOR1Q9UKL0 485 aa6.28□□□□□ -1.4
ATG4A-204ENST00000372246 SETD1BQ9UPS6 1966 aaKnown RBP6.28□□□□□ -1.4
ATG4A-204ENST00000372246 ARAP3Q8WWN8 1544 aa6.27□□□□□ -1.41
ATG4A-204ENST00000372246 BTBD11A6QL63 1104 aa6.27□□□□□ -1.41
ATG4A-204ENST00000372246 GOLIM4O00461 696 aa6.27□□□□□ -1.41
ATG4A-204ENST00000372246 SERPINC1P01008 464 aa6.27□□□□□ -1.41
ATG4A-204ENST00000372246 TIMM10P62072 90 aa6.27□□□□□ -1.41
ATG4A-204ENST00000372246 EN1Q05925 392 aaPredicted RBP6.27□□□□□ -1.41
ATG4A-204ENST00000372246 SART3Q15020 963 aaKnown RBP6.27□□□□□ -1.41
ATG4A-204ENST00000372246 SF3A1Q15459 793 aaKnown RBP6.27□□□□□ -1.41
ATG4A-204ENST00000372246 CC2D1AQ6P1N0 951 aaPredicted RBP6.27□□□□□ -1.41
ATG4A-204ENST00000372246 ARHGEF1Q92888 912 aaKnown RBP6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 75.6 ms