RNA–Protein interactions for RNA: ENST00000372066.7

LDB3-204, Transcript of LIM domain binding 3, humanhuman

TSL 1 (best) BASIC

Gene LDB3, Length 1,598 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-204ENST00000372066 HAUS7Q99871 368 aa16.81■□□□□ 0.28
LDB3-204ENST00000372066 UPF3BQ9BZI7 483 aaKnown RBP16.81■□□□□ 0.28
LDB3-204ENST00000372066 ZNF408Q9H9D4 720 aa16.81■□□□□ 0.28
LDB3-204ENST00000372066 EYA2O00167 538 aa16.81■□□□□ 0.28
LDB3-204ENST00000372066 IRS4O14654 1257 aaPredicted RBP16.81■□□□□ 0.28
LDB3-204ENST00000372066 PSMA5P28066 241 aa16.81■□□□□ 0.28
LDB3-204ENST00000372066 KLHL40Q2TBA0 621 aa16.81■□□□□ 0.28
LDB3-204ENST00000372066 VPS53Q5VIR6 699 aa16.81■□□□□ 0.28
LDB3-204ENST00000372066 CDC37L1Q7L3B6 337 aa16.81■□□□□ 0.28
LDB3-204ENST00000372066 SAPCD2Q86UD0 394 aa16.81■□□□□ 0.28
LDB3-204ENST00000372066 TRPM4Q8TD43 1214 aa16.81■□□□□ 0.28
LDB3-204ENST00000372066 ZSCAN31Q96LW9 406 aaPredicted RBP16.81■□□□□ 0.28
LDB3-204ENST00000372066 LIMCH1Q9UPQ0 1083 aa16.81■□□□□ 0.28
LDB3-204ENST00000372066 ZBTB12Q9Y330 459 aaPredicted RBP16.81■□□□□ 0.28
LDB3-204ENST00000372066 CHMP3Q9Y3E7 222 aa16.81■□□□□ 0.28
LDB3-204ENST00000372066 SHTN1A0MZ66 631 aa16.8■□□□□ 0.28
LDB3-204ENST00000372066 AOC2O75106 756 aa16.8■□□□□ 0.28
LDB3-204ENST00000372066 PTH1RQ03431 593 aa16.8■□□□□ 0.28
LDB3-204ENST00000372066 ATG9AQ7Z3C6 839 aa16.8■□□□□ 0.28
LDB3-204ENST00000372066 MICALL2Q8IY33 904 aa16.8■□□□□ 0.28
LDB3-204ENST00000372066 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.8■□□□□ 0.28
LDB3-204ENST00000372066 JARID2Q92833 1246 aaPredicted RBP16.8■□□□□ 0.28
LDB3-204ENST00000372066 DBNDD1Q9H9R9 158 aa16.8■□□□□ 0.28
LDB3-204ENST00000372066 ZSWIM6Q9HCJ5 1215 aa16.8■□□□□ 0.28
LDB3-204ENST00000372066 RBM8AQ9Y5S9 174 aaKnown RBP16.8■□□□□ 0.28
LDB3-204ENST00000372066 RPAP1Q9BWH6 1393 aaPredicted RBP16.79■□□□□ 0.28
LDB3-204ENST00000372066 PSMD14O00487 310 aa16.79■□□□□ 0.28
LDB3-204ENST00000372066 BRD1O95696 1058 aa16.79■□□□□ 0.28
LDB3-204ENST00000372066 MAP2K2P36507 400 aa16.79■□□□□ 0.28
LDB3-204ENST00000372066 GPSM2P81274 684 aa16.79■□□□□ 0.28
LDB3-204ENST00000372066 RASEFQ8IZ41 740 aa16.79■□□□□ 0.28
LDB3-204ENST00000372066 ZBTB38Q8NAP3 1195 aaPredicted RBP16.79■□□□□ 0.28
LDB3-204ENST00000372066 SH2B1Q9NRF2 756 aaPredicted RBP16.79■□□□□ 0.28
LDB3-204ENST00000372066 POLLQ9UGP5 575 aa16.79■□□□□ 0.28
LDB3-204ENST00000372066 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.79■□□□□ 0.28
LDB3-204ENST00000372066 CYP46A1Q9Y6A2 500 aa16.79■□□□□ 0.28
LDB3-204ENST00000372066 MYH7P12883 1935 aa16.79■□□□□ 0.28
LDB3-204ENST00000372066 PDIA4P13667 645 aaKnown RBP16.78■□□□□ 0.28
LDB3-204ENST00000372066 KCNJ4P48050 445 aa16.78■□□□□ 0.28
LDB3-204ENST00000372066 RPS8P62241 208 aaKnown RBP16.78■□□□□ 0.28
LDB3-204ENST00000372066 DOK7Q18PE1 504 aa16.78■□□□□ 0.28
LDB3-204ENST00000372066 TSGA10IPQ3SY00 556 aa16.78■□□□□ 0.28
LDB3-204ENST00000372066 USP48Q86UV5 1035 aa16.78■□□□□ 0.28
LDB3-204ENST00000372066 DPF2Q92785 391 aa16.78■□□□□ 0.28
LDB3-204ENST00000372066 FAM227BQ96M60 508 aa16.78■□□□□ 0.28
LDB3-204ENST00000372066 DBNDD2Q9BQY9 259 aa16.78■□□□□ 0.28
LDB3-204ENST00000372066 A0A0D9SFI3 127 aa16.77■□□□□ 0.28
LDB3-204ENST00000372066 CASTP20810 708 aaKnown RBP16.77■□□□□ 0.28
LDB3-204ENST00000372066 AK2P54819 239 aa16.77■□□□□ 0.28
LDB3-204ENST00000372066 KRT32Q14532 448 aa16.77■□□□□ 0.28
LDB3-204ENST00000372066 CCDC57Q2TAC2 916 aa16.77■□□□□ 0.28
LDB3-204ENST00000372066 CREB3L3Q68CJ9 461 aa16.77■□□□□ 0.28
LDB3-204ENST00000372066 SAMD7Q7Z3H4 446 aa16.77■□□□□ 0.28
LDB3-204ENST00000372066 EYA3Q99504 573 aa16.77■□□□□ 0.28
LDB3-204ENST00000372066 ALDH8A1Q9H2A2 487 aaPredicted RBP16.77■□□□□ 0.28
LDB3-204ENST00000372066 AKAP2Q9Y2D5 859 aa16.77■□□□□ 0.28
LDB3-204ENST00000372066 LAMB2P55268 1798 aa16.77■□□□□ 0.28
LDB3-204ENST00000372066 ANKRD1Q15327 319 aa16.77■□□□□ 0.27
LDB3-204ENST00000372066 RBM26Q5T8P6 1007 aaKnown RBP16.77■□□□□ 0.27
LDB3-204ENST00000372066 RUFY3Q7L099 469 aa16.77■□□□□ 0.27
LDB3-204ENST00000372066 KBTBD3Q8NAB2 608 aa16.77■□□□□ 0.27
LDB3-204ENST00000372066 ABHD8Q96I13 439 aa16.77■□□□□ 0.27
LDB3-204ENST00000372066 JAKMIP1Q96N16 626 aaKnown RBP16.77■□□□□ 0.27
LDB3-204ENST00000372066 TSKSQ9UJT2 592 aa16.77■□□□□ 0.27
LDB3-204ENST00000372066 ZDHHC9Q9Y397 364 aa16.77■□□□□ 0.27
LDB3-204ENST00000372066 CSF1RP07333 972 aa16.76■□□□□ 0.27
LDB3-204ENST00000372066 HSP90B1P14625 803 aaKnown RBP16.76■□□□□ 0.27
LDB3-204ENST00000372066 MRE11P49959 708 aa16.76■□□□□ 0.27
LDB3-204ENST00000372066 LRRFIP1Q32MZ4 808 aaKnown RBP16.76■□□□□ 0.27
LDB3-204ENST00000372066 TBC1D10BQ4KMP7 808 aaPredicted RBP16.76■□□□□ 0.27
LDB3-204ENST00000372066 MCTP1Q6DN14 999 aa16.76■□□□□ 0.27
LDB3-204ENST00000372066 TBC1D16Q8TBP0 767 aa16.76■□□□□ 0.27
LDB3-204ENST00000372066 HHIPL1Q96JK4 782 aa16.76■□□□□ 0.27
LDB3-204ENST00000372066 ZC3H12CQ9C0D7 883 aaKnown RBP16.76■□□□□ 0.27
LDB3-204ENST00000372066 KCNQ5Q9NR82 932 aa16.76■□□□□ 0.27
LDB3-204ENST00000372066 PDRG1Q9NUG6 133 aa16.76■□□□□ 0.27
LDB3-204ENST00000372066 ARAP2Q8WZ64 1704 aa16.75■□□□□ 0.27
LDB3-204ENST00000372066 G3V3G9 751 aa16.75■□□□□ 0.27
LDB3-204ENST00000372066 SLC27A2O14975 620 aa16.75■□□□□ 0.27
LDB3-204ENST00000372066 ECE2O60344 883 aa16.75■□□□□ 0.27
LDB3-204ENST00000372066 PKP1Q13835 747 aa16.75■□□□□ 0.27
LDB3-204ENST00000372066 DCAF8Q5TAQ9 597 aa16.75■□□□□ 0.27
LDB3-204ENST00000372066 SEC31BQ9NQW1 1179 aa16.75■□□□□ 0.27
LDB3-204ENST00000372066 CEP126Q9P2H0 1117 aa16.75■□□□□ 0.27
LDB3-204ENST00000372066 DDX49Q9Y6V7 483 aaKnown RBP16.75■□□□□ 0.27
LDB3-204ENST00000372066 U3KPZ7 1027 aaPredicted RBP16.75■□□□□ 0.27
LDB3-204ENST00000372066 RPS12P25398 132 aaKnown RBP16.74■□□□□ 0.27
LDB3-204ENST00000372066 DLK2Q6UY11 383 aa16.74■□□□□ 0.27
LDB3-204ENST00000372066 HELLSQ9NRZ9 838 aa16.74■□□□□ 0.27
LDB3-204ENST00000372066 LMBRD1Q9NUN5 540 aa16.74■□□□□ 0.27
LDB3-204ENST00000372066 ANKIB1Q9P2G1 1089 aa16.74■□□□□ 0.27
LDB3-204ENST00000372066 TAF5LO75529 589 aa16.73■□□□□ 0.27
LDB3-204ENST00000372066 MCMDC2Q4G0Z9 681 aa16.73■□□□□ 0.27
LDB3-204ENST00000372066 KRT26Q7Z3Y9 468 aa16.73■□□□□ 0.27
LDB3-204ENST00000372066 DCPSQ96C86 337 aaKnown RBP16.73■□□□□ 0.27
LDB3-204ENST00000372066 GZF1Q9H116 711 aaPredicted RBP16.73■□□□□ 0.27
LDB3-204ENST00000372066 PAG1Q9NWQ8 432 aa16.73■□□□□ 0.27
LDB3-204ENST00000372066 LAMA4Q16363 1823 aa16.73■□□□□ 0.27
LDB3-204ENST00000372066 A0A1B0GUL7 405 aa16.72■□□□□ 0.27
LDB3-204ENST00000372066 CA12O43570 354 aa16.72■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms