RNA–Protein interactions for RNA: ENST00000371621.4

PTPN1-201, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN1, Length 4,008 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-201ENST00000371621 SELENOSQ9BQE4 189 aa13.32□□□□□ -0.28
PTPN1-201ENST00000371621 KDM5BQ9UGL1 1544 aa13.32□□□□□ -0.28
PTPN1-201ENST00000371621 ANKRD18BA2A2Z9 1011 aa13.32□□□□□ -0.28
PTPN1-201ENST00000371621 MARCH6O60337 910 aa13.32□□□□□ -0.28
PTPN1-201ENST00000371621 NEFHP12036 1026 aa13.32□□□□□ -0.28
PTPN1-201ENST00000371621 GUCY2FP51841 1108 aa13.32□□□□□ -0.28
PTPN1-201ENST00000371621 ATP8B2P98198 1209 aa13.32□□□□□ -0.28
PTPN1-201ENST00000371621 KDM5CP41229 1560 aa13.32□□□□□ -0.28
PTPN1-201ENST00000371621 RGS12O14924 1447 aa13.32□□□□□ -0.28
PTPN1-201ENST00000371621 AKR1B10O60218 316 aa13.32□□□□□ -0.28
PTPN1-201ENST00000371621 NDUFA8P51970 172 aa13.32□□□□□ -0.28
PTPN1-201ENST00000371621 PNOCQ13519 176 aa13.32□□□□□ -0.28
PTPN1-201ENST00000371621 CCDC6Q16204 474 aa13.32□□□□□ -0.28
PTPN1-201ENST00000371621 SPECC1LQ69YQ0 1117 aa13.32□□□□□ -0.28
PTPN1-201ENST00000371621 DDX46Q7L014 1031 aaKnown RBP13.32□□□□□ -0.28
PTPN1-201ENST00000371621 NME9Q86XW9 330 aa13.32□□□□□ -0.28
PTPN1-201ENST00000371621 ARMC2Q8NEN0 867 aa13.32□□□□□ -0.28
PTPN1-201ENST00000371621 TAF4BQ92750 862 aa13.32□□□□□ -0.28
PTPN1-201ENST00000371621 AIDAQ96BJ3 306 aa13.32□□□□□ -0.28
PTPN1-201ENST00000371621 ERCC6L2Q5T890 1561 aa13.31□□□□□ -0.28
PTPN1-201ENST00000371621 TMCO5BA8MYB1 307 aa13.31□□□□□ -0.28
PTPN1-201ENST00000371621 USO1O60763 962 aaKnown RBP13.31□□□□□ -0.28
PTPN1-201ENST00000371621 UBE4AQ14139 1066 aa13.31□□□□□ -0.28
PTPN1-201ENST00000371621 HSP90AB2PQ58FF8 381 aa13.31□□□□□ -0.28
PTPN1-201ENST00000371621 ARMCX5Q6P1M9 558 aa13.31□□□□□ -0.28
PTPN1-201ENST00000371621 NYAP1Q6ZVC0 841 aa13.31□□□□□ -0.28
PTPN1-201ENST00000371621 OSCARQ8IYS5 282 aa13.31□□□□□ -0.28
PTPN1-201ENST00000371621 CCDC47Q96A33 483 aaKnown RBP13.31□□□□□ -0.28
PTPN1-201ENST00000371621 SAAL1Q96ER3 474 aa13.31□□□□□ -0.28
PTPN1-201ENST00000371621 KCNG1Q9UIX4 513 aa13.31□□□□□ -0.28
PTPN1-201ENST00000371621 MAPK8IP1Q9UQF2 711 aa13.31□□□□□ -0.28
PTPN1-201ENST00000371621 CDC25BP30305 580 aa13.31□□□□□ -0.28
PTPN1-201ENST00000371621 HIBCHQ6NVY1 386 aaPredicted RBP13.31□□□□□ -0.28
PTPN1-201ENST00000371621 MICU3Q86XE3 530 aa13.31□□□□□ -0.28
PTPN1-201ENST00000371621 ABCA8O94911 1581 aa13.31□□□□□ -0.28
PTPN1-201ENST00000371621 RXRAP19793 462 aa13.31□□□□□ -0.28
PTPN1-201ENST00000371621 PIP4K2AP48426 406 aaPredicted RBP13.31□□□□□ -0.28
PTPN1-201ENST00000371621 CCDC40Q4G0X9 1142 aa13.31□□□□□ -0.28
PTPN1-201ENST00000371621 ANKS4BQ8N8V4 417 aa13.31□□□□□ -0.28
PTPN1-201ENST00000371621 SIRT1Q96EB6 747 aa13.31□□□□□ -0.28
PTPN1-201ENST00000371621 PGBD1Q96JS3 809 aa13.31□□□□□ -0.28
PTPN1-201ENST00000371621 NDUFB9Q9Y6M9 179 aa13.31□□□□□ -0.28
PTPN1-201ENST00000371621 ABCC10Q5T3U5 1492 aa13.3□□□□□ -0.28
PTPN1-201ENST00000371621 VIMP08670 466 aaKnown RBP13.3□□□□□ -0.28
PTPN1-201ENST00000371621 ZKSCAN8Q15776 578 aaPredicted RBP13.3□□□□□ -0.28
PTPN1-201ENST00000371621 TMEM87AQ8NBN3 555 aa13.3□□□□□ -0.28
PTPN1-201ENST00000371621 DDX58O95786 925 aaKnown RBP13.3□□□□□ -0.28
PTPN1-201ENST00000371621 TMED8Q6PL24 325 aaPredicted RBP13.3□□□□□ -0.28
PTPN1-201ENST00000371621 NUCKS1Q9H1E3 243 aaKnown RBP13.3□□□□□ -0.28
PTPN1-201ENST00000371621 FBXO3Q9UK99 471 aa13.3□□□□□ -0.28
PTPN1-201ENST00000371621 CCDC160A6NGH7 325 aa13.3□□□□□ -0.28
PTPN1-201ENST00000371621 KRT86O43790 486 aa13.3□□□□□ -0.28
PTPN1-201ENST00000371621 NLRP12P59046 1061 aa13.3□□□□□ -0.28
PTPN1-201ENST00000371621 VSNL1P62760 191 aa13.3□□□□□ -0.28
PTPN1-201ENST00000371621 DIXDC1Q155Q3 683 aa13.3□□□□□ -0.28
PTPN1-201ENST00000371621 SOWAHDA6NJG2 315 aa13.29□□□□□ -0.28
PTPN1-201ENST00000371621 GGCXP38435 758 aa13.29□□□□□ -0.28
PTPN1-201ENST00000371621 RANBP1P43487 201 aa13.29□□□□□ -0.28
PTPN1-201ENST00000371621 KSR1Q8IVT5 923 aa13.29□□□□□ -0.28
PTPN1-201ENST00000371621 ZBTB10Q96DT7 871 aa13.29□□□□□ -0.28
PTPN1-201ENST00000371621 FAM167BQ9BTA0 163 aa13.29□□□□□ -0.28
PTPN1-201ENST00000371621 COBLO75128 1261 aa13.29□□□□□ -0.28
PTPN1-201ENST00000371621 MYBL1P10243 752 aa13.29□□□□□ -0.28
PTPN1-201ENST00000371621 KRT9P35527 623 aa13.29□□□□□ -0.28
PTPN1-201ENST00000371621 TUBB4BP68371 445 aa13.29□□□□□ -0.28
PTPN1-201ENST00000371621 SCRN1Q12765 414 aa13.29□□□□□ -0.28
PTPN1-201ENST00000371621 KIF5AQ12840 1032 aa13.29□□□□□ -0.28
PTPN1-201ENST00000371621 MYO1EQ12965 1108 aa13.29□□□□□ -0.28
PTPN1-201ENST00000371621 FUT8Q9BYC5 575 aa13.29□□□□□ -0.28
PTPN1-201ENST00000371621 NPC1L1Q9UHC9 1359 aa13.29□□□□□ -0.28
PTPN1-201ENST00000371621 ERICH2A1L162 156 aa13.29□□□□□ -0.28
PTPN1-201ENST00000371621 PPP1R12AO14974 1030 aaPredicted RBP13.29□□□□□ -0.28
PTPN1-201ENST00000371621 SLC27A2O14975 620 aa13.29□□□□□ -0.28
PTPN1-201ENST00000371621 EPS15P42566 896 aa13.29□□□□□ -0.28
PTPN1-201ENST00000371621 CCDC129Q6ZRS4 1044 aa13.29□□□□□ -0.28
PTPN1-201ENST00000371621 TOGARAM2Q6ZUX3 1019 aa13.29□□□□□ -0.28
PTPN1-201ENST00000371621 NUTM2AQ8IVF1 878 aaPredicted RBP13.29□□□□□ -0.28
PTPN1-201ENST00000371621 U3KPZ7 1027 aaPredicted RBP13.29□□□□□ -0.28
PTPN1-201ENST00000371621 KLF18A0A0U1RQI7 1052 aa13.29□□□□□ -0.28
PTPN1-201ENST00000371621 PRPF4BQ13523 1007 aaKnown RBP13.29□□□□□ -0.28
PTPN1-201ENST00000371621 LRRC31Q6UY01 552 aa13.29□□□□□ -0.28
PTPN1-201ENST00000371621 PCDHA7Q9UN72 937 aa13.29□□□□□ -0.28
PTPN1-201ENST00000371621 TMEM232C9JQI7 657 aa13.28□□□□□ -0.28
PTPN1-201ENST00000371621 MXRA7P84157 204 aa13.28□□□□□ -0.28
PTPN1-201ENST00000371621 CYB5RLQ6IPT4 315 aa13.28□□□□□ -0.28
PTPN1-201ENST00000371621 ARFGAP2Q8N6H7 521 aa13.28□□□□□ -0.28
PTPN1-201ENST00000371621 FBF1Q8TES7 1133 aa13.28□□□□□ -0.28
PTPN1-201ENST00000371621 PI4KAP2A4QPH2 592 aa13.28□□□□□ -0.28
PTPN1-201ENST00000371621 POLE2P56282 527 aa13.28□□□□□ -0.28
PTPN1-201ENST00000371621 PI4KAP1Q8N8J0 262 aa13.28□□□□□ -0.28
PTPN1-201ENST00000371621 RNF217Q8TC41 542 aa13.28□□□□□ -0.28
PTPN1-201ENST00000371621 STAMQ92783 540 aa13.28□□□□□ -0.28
PTPN1-201ENST00000371621 EEF2KMTQ96G04 330 aa13.28□□□□□ -0.28
PTPN1-201ENST00000371621 SERPINA10Q9UK55 444 aa13.28□□□□□ -0.28
PTPN1-201ENST00000371621 AKAP2Q9Y2D5 859 aa13.28□□□□□ -0.28
PTPN1-201ENST00000371621 SAR1BQ9Y6B6 198 aa13.28□□□□□ -0.28
PTPN1-201ENST00000371621 UBXN1Q04323 297 aa13.28□□□□□ -0.28
PTPN1-201ENST00000371621 UBLCP1Q8WVY7 318 aaPredicted RBP13.28□□□□□ -0.28
PTPN1-201ENST00000371621 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.28□□□□□ -0.28
PTPN1-201ENST00000371621 ANKRD62A6NC57 917 aa13.27□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms