RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 ZNF697Q5TEC3 545 aa4.67□□□□□ -1.66
USH2A-202ENST00000366942 BTBD8Q5XKL5 378 aa4.67□□□□□ -1.66
USH2A-202ENST00000366942 ZBTB8OSQ8IWT0 167 aa4.67□□□□□ -1.66
USH2A-202ENST00000366942 RAB3IL1Q8TBN0 382 aa4.67□□□□□ -1.66
USH2A-202ENST00000366942 SREK1Q8WXA9 508 aaKnown RBP4.67□□□□□ -1.66
USH2A-202ENST00000366942 ZNF428Q96B54 188 aa4.67□□□□□ -1.66
USH2A-202ENST00000366942 LRRC46Q96FV0 321 aa4.67□□□□□ -1.66
USH2A-202ENST00000366942 STIM2Q9P246 746 aa4.67□□□□□ -1.66
USH2A-202ENST00000366942 NUP160Q12769 1436 aa4.67□□□□□ -1.66
USH2A-202ENST00000366942 PI4K2BG5E9Z4 385 aa4.67□□□□□ -1.66
USH2A-202ENST00000366942 TOMM70O94826 608 aa4.67□□□□□ -1.66
USH2A-202ENST00000366942 SERPINB2P05120 415 aa4.67□□□□□ -1.66
USH2A-202ENST00000366942 TGFB2P61812 414 aa4.67□□□□□ -1.66
USH2A-202ENST00000366942 NFX1Q12986 1120 aaKnown RBP4.67□□□□□ -1.66
USH2A-202ENST00000366942 TMTC2Q8N394 836 aa4.67□□□□□ -1.66
USH2A-202ENST00000366942 PI4K2BQ8TCG2 481 aa4.67□□□□□ -1.66
USH2A-202ENST00000366942 NACC1Q96RE7 527 aa4.67□□□□□ -1.66
USH2A-202ENST00000366942 GBA2Q9HCG7 927 aaPredicted RBP4.67□□□□□ -1.66
USH2A-202ENST00000366942 STX8Q9UNK0 236 aa4.67□□□□□ -1.66
USH2A-202ENST00000366942 POTEB2H3BUK9 544 aa4.67□□□□□ -1.66
USH2A-202ENST00000366942 GNAT2P19087 354 aa4.67□□□□□ -1.66
USH2A-202ENST00000366942 CTNNA2P26232 953 aa4.67□□□□□ -1.66
USH2A-202ENST00000366942 SMTNP53814 917 aa4.67□□□□□ -1.66
USH2A-202ENST00000366942 ZNF174Q15697 407 aa4.67□□□□□ -1.66
USH2A-202ENST00000366942 UCMAQ8WVF2 138 aa4.67□□□□□ -1.66
USH2A-202ENST00000366942 PHKBQ93100 1093 aa4.67□□□□□ -1.66
USH2A-202ENST00000366942 DTNBP1Q96EV8 351 aa4.67□□□□□ -1.66
USH2A-202ENST00000366942 GBP4Q96PP9 640 aa4.67□□□□□ -1.66
USH2A-202ENST00000366942 CCDC85AQ96PX6 553 aaPredicted RBP4.67□□□□□ -1.66
USH2A-202ENST00000366942 ARHGAP9Q9BRR9 750 aa4.67□□□□□ -1.66
USH2A-202ENST00000366942 TBC1D2Q9BYX2 928 aa4.67□□□□□ -1.66
USH2A-202ENST00000366942 SIL1Q9H173 461 aa4.67□□□□□ -1.66
USH2A-202ENST00000366942 CNNM2Q9H8M5 875 aa4.67□□□□□ -1.66
USH2A-202ENST00000366942 RAD54L2Q9Y4B4 1467 aa4.67□□□□□ -1.66
USH2A-202ENST00000366942 ABCC5O15440 1437 aa4.67□□□□□ -1.66
USH2A-202ENST00000366942 USP17L8P0C7I0 530 aa4.67□□□□□ -1.66
USH2A-202ENST00000366942 KRT13P13646 458 aa4.67□□□□□ -1.66
USH2A-202ENST00000366942 HIBADHP31937 336 aaKnown RBP4.67□□□□□ -1.66
USH2A-202ENST00000366942 KCNH2Q12809 1159 aa4.67□□□□□ -1.66
USH2A-202ENST00000366942 PSMD2Q13200 908 aa4.67□□□□□ -1.66
USH2A-202ENST00000366942 TFDP1Q14186 410 aa4.67□□□□□ -1.66
USH2A-202ENST00000366942 TMEM132BQ14DG7 1078 aa4.67□□□□□ -1.66
USH2A-202ENST00000366942 NRBP2Q9NSY0 501 aa4.67□□□□□ -1.66
USH2A-202ENST00000366942 SALL3Q9BXA9 1300 aa4.67□□□□□ -1.66
USH2A-202ENST00000366942 TMEM88BA6NKF7 163 aa4.66□□□□□ -1.66
USH2A-202ENST00000366942 RPS12P25398 132 aaKnown RBP4.66□□□□□ -1.66
USH2A-202ENST00000366942 GTF2IP78347 998 aa4.66□□□□□ -1.66
USH2A-202ENST00000366942 RAB3GAP1Q15042 981 aa4.66□□□□□ -1.66
USH2A-202ENST00000366942 E4F1Q66K89 784 aaPredicted RBP4.66□□□□□ -1.66
USH2A-202ENST00000366942 PCSK9Q8NBP7 692 aaKnown RBP4.66□□□□□ -1.66
USH2A-202ENST00000366942 ATRIPQ8WXE1 791 aa4.66□□□□□ -1.66
USH2A-202ENST00000366942 SMARCE1Q969G3 411 aa4.66□□□□□ -1.66
USH2A-202ENST00000366942 CALML4Q96GE6 196 aa4.66□□□□□ -1.66
USH2A-202ENST00000366942 AMNQ9BXJ7 453 aa4.66□□□□□ -1.66
USH2A-202ENST00000366942 POLIQ9UNA4 740 aa4.66□□□□□ -1.66
USH2A-202ENST00000366942 ERBINQ96RT1 1412 aa4.66□□□□□ -1.66
USH2A-202ENST00000366942 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP4.66□□□□□ -1.66
USH2A-202ENST00000366942 HOXC6P09630 235 aa4.66□□□□□ -1.66
USH2A-202ENST00000366942 FSTL1Q12841 308 aa4.66□□□□□ -1.66
USH2A-202ENST00000366942 RC3H1Q5TC82 1133 aaKnown RBP4.66□□□□□ -1.66
USH2A-202ENST00000366942 C12orf50Q8NA57 414 aaPredicted RBP4.66□□□□□ -1.66
USH2A-202ENST00000366942 NUDT12Q9BQG2 462 aa4.66□□□□□ -1.66
USH2A-202ENST00000366942 GTPBP4Q9BZE4 634 aaKnown RBP4.66□□□□□ -1.66
USH2A-202ENST00000366942 SLC12A6Q9UHW9 1150 aa4.66□□□□□ -1.66
USH2A-202ENST00000366942 ABCC10Q5T3U5 1492 aa4.66□□□□□ -1.66
USH2A-202ENST00000366942 SMTNL1A8MU46 457 aa4.66□□□□□ -1.66
USH2A-202ENST00000366942 ZFYP08048 801 aaPredicted RBP4.66□□□□□ -1.66
USH2A-202ENST00000366942 RARBP10826 455 aa4.66□□□□□ -1.66
USH2A-202ENST00000366942 PRKAR2BP31323 418 aa4.66□□□□□ -1.66
USH2A-202ENST00000366942 GBP2P32456 591 aaPredicted RBP4.66□□□□□ -1.66
USH2A-202ENST00000366942 YWHAEP62258 255 aaKnown RBP4.66□□□□□ -1.66
USH2A-202ENST00000366942 MAP2K5Q13163 448 aa4.66□□□□□ -1.66
USH2A-202ENST00000366942 JAKMIP3Q5VZ66 844 aa4.66□□□□□ -1.66
USH2A-202ENST00000366942 GPATCH11Q8N954 259 aa4.66□□□□□ -1.66
USH2A-202ENST00000366942 CABLES1Q8TDN4 633 aa4.66□□□□□ -1.66
USH2A-202ENST00000366942 TSC1Q92574 1164 aa4.66□□□□□ -1.66
USH2A-202ENST00000366942 OPTNQ96CV9 577 aa4.66□□□□□ -1.66
USH2A-202ENST00000366942 ZNF396Q96N95 335 aaPredicted RBP4.66□□□□□ -1.66
USH2A-202ENST00000366942 NCAPGQ9BPX3 1015 aa4.66□□□□□ -1.66
USH2A-202ENST00000366942 TRPC6Q9Y210 931 aa4.66□□□□□ -1.66
USH2A-202ENST00000366942 GTF2A2P52657 109 aa4.66□□□□□ -1.66
USH2A-202ENST00000366942 RRP1P56182 461 aaKnown RBP4.66□□□□□ -1.66
USH2A-202ENST00000366942 ARHGAP15Q53QZ3 475 aa4.66□□□□□ -1.66
USH2A-202ENST00000366942 FMNL3Q8IVF7 1028 aa4.66□□□□□ -1.66
USH2A-202ENST00000366942 DDX12PQ92771 950 aa4.66□□□□□ -1.66
USH2A-202ENST00000366942 KATNAL1Q9BW62 490 aa4.66□□□□□ -1.66
USH2A-202ENST00000366942 DYRK4Q9NR20 520 aa4.66□□□□□ -1.66
USH2A-202ENST00000366942 DONSONQ9NYP3 566 aa4.66□□□□□ -1.66
USH2A-202ENST00000366942 GTF3C5Q9Y5Q8 519 aaPredicted RBP4.66□□□□□ -1.66
USH2A-202ENST00000366942 HMGXB3Q12766 1538 aa4.66□□□□□ -1.66
USH2A-202ENST00000366942 PPEF1O14829 653 aaPredicted RBP4.66□□□□□ -1.66
USH2A-202ENST00000366942 HRCP23327 699 aa4.66□□□□□ -1.66
USH2A-202ENST00000366942 STRN3Q13033 797 aa4.66□□□□□ -1.66
USH2A-202ENST00000366942 BYSLQ13895 437 aaKnown RBP4.66□□□□□ -1.66
USH2A-202ENST00000366942 ELOAQ14241 798 aaKnown RBP4.66□□□□□ -1.66
USH2A-202ENST00000366942 VPS72Q15906 364 aa4.66□□□□□ -1.66
USH2A-202ENST00000366942 GPR101Q96P66 508 aaPredicted RBP4.66□□□□□ -1.66
USH2A-202ENST00000366942 PSMD1Q99460 953 aa4.66□□□□□ -1.66
USH2A-202ENST00000366942 LGR6Q9HBX8 967 aa4.66□□□□□ -1.66
USH2A-202ENST00000366942 C19orf81C9J6K1 198 aa4.65□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms