RNA–Protein interactions for RNA: ENST00000361654.8

CLIP1-203, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5 BASIC

Gene CLIP1, Length 5,568 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-203ENST00000361654 MRPS27Q92552 414 aaKnown RBP12.35□□□□□ -0.43
CLIP1-203ENST00000361654 PKD2L1Q9P0L9 805 aa12.35□□□□□ -0.43
CLIP1-203ENST00000361654 NEK11Q8NG66 645 aa12.35□□□□□ -0.43
CLIP1-203ENST00000361654 NSMCE1Q8WV22 266 aa12.35□□□□□ -0.43
CLIP1-203ENST00000361654 SAP30BPQ9UHR5 308 aaKnown RBP12.35□□□□□ -0.43
CLIP1-203ENST00000361654 CCDC169A6NNP5 214 aa12.35□□□□□ -0.43
CLIP1-203ENST00000361654 CCDC63Q8NA47 563 aa12.35□□□□□ -0.43
CLIP1-203ENST00000361654 LARP6Q9BRS8 491 aaKnown RBP12.35□□□□□ -0.43
CLIP1-203ENST00000361654 GPCPD1Q9NPB8 672 aa12.35□□□□□ -0.43
CLIP1-203ENST00000361654 JAG2Q9Y219 1238 aa12.35□□□□□ -0.43
CLIP1-203ENST00000361654 RALGAPBQ86X10 1494 aa12.35□□□□□ -0.43
CLIP1-203ENST00000361654 MYCLP12524 364 aaPredicted RBP12.35□□□□□ -0.43
CLIP1-203ENST00000361654 UBE2HP62256 183 aa12.35□□□□□ -0.43
CLIP1-203ENST00000361654 Q6ZUG5 572 aa12.35□□□□□ -0.43
CLIP1-203ENST00000361654 SULF1Q8IWU6 871 aa12.35□□□□□ -0.43
CLIP1-203ENST00000361654 YTHDC2Q9H6S0 1430 aaKnown RBP12.34□□□□□ -0.43
CLIP1-203ENST00000361654 CFAP58Q5T655 872 aa12.34□□□□□ -0.43
CLIP1-203ENST00000361654 KIFC2Q96AC6 838 aa12.34□□□□□ -0.43
CLIP1-203ENST00000361654 TBC1D2Q9BYX2 928 aa12.34□□□□□ -0.43
CLIP1-203ENST00000361654 PRKAG2Q9UGJ0 569 aa12.34□□□□□ -0.43
CLIP1-203ENST00000361654 MTHFSDQ2M296 383 aaKnown RBP12.34□□□□□ -0.43
CLIP1-203ENST00000361654 MAP7D1Q3KQU3 841 aa12.34□□□□□ -0.43
CLIP1-203ENST00000361654 CEP135Q66GS9 1140 aa12.34□□□□□ -0.43
CLIP1-203ENST00000361654 CCDC125Q86Z20 511 aa12.34□□□□□ -0.43
CLIP1-203ENST00000361654 PLBD2Q8NHP8 589 aa12.34□□□□□ -0.43
CLIP1-203ENST00000361654 DDX21Q9NR30 783 aaKnown RBP eCLIP12.34□□□□□ -0.43
CLIP1-203ENST00000361654 PNMA2Q9UL42 364 aa12.34□□□□□ -0.43
CLIP1-203ENST00000361654 JAKMIP2Q96AA8 810 aa12.34□□□□□ -0.43
CLIP1-203ENST00000361654 USP25Q9UHP3 1055 aa12.34□□□□□ -0.43
CLIP1-203ENST00000361654 ZNF772Q68DY9 489 aaPredicted RBP12.34□□□□□ -0.43
CLIP1-203ENST00000361654 NSMFQ6X4W1 530 aa12.34□□□□□ -0.43
CLIP1-203ENST00000361654 RIOK3O14730 519 aaKnown RBP12.33□□□□□ -0.44
CLIP1-203ENST00000361654 TBC1D9Q6ZT07 1266 aa12.33□□□□□ -0.44
CLIP1-203ENST00000361654 SV2BQ7L1I2 683 aa12.33□□□□□ -0.44
CLIP1-203ENST00000361654 PUS7Q96PZ0 661 aaKnown RBP12.33□□□□□ -0.44
CLIP1-203ENST00000361654 MEIS3Q99687 375 aa12.33□□□□□ -0.44
CLIP1-203ENST00000361654 CGNQ9P2M7 1197 aaKnown RBP12.33□□□□□ -0.44
CLIP1-203ENST00000361654 ARHGEF35A5YM69 484 aa12.33□□□□□ -0.44
CLIP1-203ENST00000361654 PPFIA3O75145 1194 aa12.33□□□□□ -0.44
CLIP1-203ENST00000361654 MBD4O95243 580 aa12.33□□□□□ -0.44
CLIP1-203ENST00000361654 EPB41P11171 864 aaKnown RBP12.33□□□□□ -0.44
CLIP1-203ENST00000361654 KRT83P78385 493 aa12.33□□□□□ -0.44
CLIP1-203ENST00000361654 ISM2Q6H9L7 571 aa12.33□□□□□ -0.44
CLIP1-203ENST00000361654 DHX58Q96C10 678 aa12.33□□□□□ -0.44
CLIP1-203ENST00000361654 ARID4AP29374 1257 aaPredicted RBP12.33□□□□□ -0.44
CLIP1-203ENST00000361654 SLC1A4P43007 532 aa12.33□□□□□ -0.44
CLIP1-203ENST00000361654 UBASH3AP57075 661 aa12.33□□□□□ -0.44
CLIP1-203ENST00000361654 FAM47CQ5HY64 1035 aa12.33□□□□□ -0.44
CLIP1-203ENST00000361654 CTR9Q6PD62 1173 aa12.33□□□□□ -0.44
CLIP1-203ENST00000361654 IQUBQ8NA54 791 aa12.33□□□□□ -0.44
CLIP1-203ENST00000361654 CCT6BQ92526 530 aa12.33□□□□□ -0.44
CLIP1-203ENST00000361654 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.33□□□□□ -0.443e-6■■■■■ 31.2
CLIP1-203ENST00000361654 RRAGDQ9NQL2 400 aaPredicted RBP12.33□□□□□ -0.44
CLIP1-203ENST00000361654 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.33□□□□□ -0.44
CLIP1-203ENST00000361654 DAPK3O43293 454 aa12.33□□□□□ -0.44
CLIP1-203ENST00000361654 ZYXQ15942 572 aaKnown RBP12.33□□□□□ -0.44
CLIP1-203ENST00000361654 FBF1Q8TES7 1133 aa12.33□□□□□ -0.44
CLIP1-203ENST00000361654 CNKSR1Q969H4 720 aa12.33□□□□□ -0.44
CLIP1-203ENST00000361654 LRRC2Q9BYS8 371 aa12.33□□□□□ -0.44
CLIP1-203ENST00000361654 FAM107BQ9H098 131 aa12.33□□□□□ -0.44
CLIP1-203ENST00000361654 CSRNP2Q9H175 543 aa12.33□□□□□ -0.44
CLIP1-203ENST00000361654 SLAIN2Q9P270 581 aa12.33□□□□□ -0.44
CLIP1-203ENST00000361654 STK10O94804 968 aaKnown RBP12.32□□□□□ -0.44
CLIP1-203ENST00000361654 ITGA6P23229 1130 aa12.32□□□□□ -0.44
CLIP1-203ENST00000361654 MCM7P33993 719 aa12.32□□□□□ -0.44
CLIP1-203ENST00000361654 PLCD1P51178 756 aa12.32□□□□□ -0.44
CLIP1-203ENST00000361654 ANKRD44Q8N8A2 993 aa12.32□□□□□ -0.44
CLIP1-203ENST00000361654 GSDMBQ8TAX9 411 aa12.32□□□□□ -0.44
CLIP1-203ENST00000361654 PRIM1P49642 420 aaKnown RBP12.32□□□□□ -0.44
CLIP1-203ENST00000361654 CCDC114Q96M63 670 aa12.32□□□□□ -0.44
CLIP1-203ENST00000361654 ZMYM3Q14202 1370 aa12.32□□□□□ -0.44
CLIP1-203ENST00000361654 EIF4G3O43432 1585 aaKnown RBP12.32□□□□□ -0.44
CLIP1-203ENST00000361654 HSF2BPO75031 334 aa12.32□□□□□ -0.44
CLIP1-203ENST00000361654 CCT6AP40227 531 aaKnown RBP12.32□□□□□ -0.44
CLIP1-203ENST00000361654 NSRP1Q9H0G5 558 aaKnown RBP12.32□□□□□ -0.44
CLIP1-203ENST00000361654 RTEL1Q9NZ71 1219 aa12.32□□□□□ -0.44
CLIP1-203ENST00000361654 TMEM110-MUSTN1A8MSY1 372 aa12.32□□□□□ -0.44
CLIP1-203ENST00000361654 HOXC9P31274 260 aa12.32□□□□□ -0.44
CLIP1-203ENST00000361654 NLRX1Q86UT6 975 aa12.32□□□□□ -0.44
CLIP1-203ENST00000361654 CPXCR1Q8N123 301 aa12.32□□□□□ -0.44
CLIP1-203ENST00000361654 SMC1BQ8NDV3 1235 aa12.32□□□□□ -0.44
CLIP1-203ENST00000361654 FAM204AQ9H8W3 233 aa12.32□□□□□ -0.44
CLIP1-203ENST00000361654 MTUS1Q9ULD2 1270 aa12.32□□□□□ -0.44
CLIP1-203ENST00000361654 PDE1AP54750 535 aa12.32□□□□□ -0.44
CLIP1-203ENST00000361654 TFCP2Q12800 502 aa12.32□□□□□ -0.44
CLIP1-203ENST00000361654 INF2Q27J81 1249 aa12.32□□□□□ -0.44
CLIP1-203ENST00000361654 GNPTABQ3T906 1256 aa12.32□□□□□ -0.44
CLIP1-203ENST00000361654 TTC14Q96N46 770 aa12.32□□□□□ -0.44
CLIP1-203ENST00000361654 RAD50Q92878 1312 aa12.32□□□□□ -0.44
CLIP1-203ENST00000361654 NPATQ14207 1427 aa12.31□□□□□ -0.44
CLIP1-203ENST00000361654 EYA2O00167 538 aa12.31□□□□□ -0.44
CLIP1-203ENST00000361654 GMNNO75496 209 aa12.31□□□□□ -0.44
CLIP1-203ENST00000361654 ALDH3A1P30838 453 aa12.31□□□□□ -0.44
CLIP1-203ENST00000361654 MXRA7P84157 204 aa12.31□□□□□ -0.44
CLIP1-203ENST00000361654 NMIQ13287 307 aaPredicted RBP12.31□□□□□ -0.44
CLIP1-203ENST00000361654 RNF187Q5TA31 235 aaPredicted RBP12.31□□□□□ -0.44
CLIP1-203ENST00000361654 CHURC1Q8WUH1 139 aa12.31□□□□□ -0.44
CLIP1-203ENST00000361654 ANAPC4Q9UJX5 808 aa12.31□□□□□ -0.44
CLIP1-203ENST00000361654 TRPC5Q9UL62 973 aaPredicted RBP12.31□□□□□ -0.44
CLIP1-203ENST00000361654 KRT5P13647 590 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms