RNA–Protein interactions for RNA: ENST00000361115.4

CCL28-201, Transcript of C-C motif chemokine ligand 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCL28, Length 3,126 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCL28-201ENST00000361115 ZNF219Q9P2Y4 722 aaPredicted RBP9.27□□□□□ -0.93
CCL28-201ENST00000361115 ZGPATQ8N5A5 531 aaKnown RBP9.26□□□□□ -0.93
CCL28-201ENST00000361115 XDHP47989 1333 aa9.26□□□□□ -0.93
CCL28-201ENST00000361115 DNTTIP2Q5QJE6 756 aaKnown RBP9.26□□□□□ -0.93
CCL28-201ENST00000361115 ZNF830Q96NB3 372 aaPredicted RBP9.26□□□□□ -0.93
CCL28-201ENST00000361115 RPAP1Q9BWH6 1393 aaPredicted RBP9.25□□□□□ -0.93
CCL28-201ENST00000361115 ZNF804BA4D1E1 1349 aa9.25□□□□□ -0.93
CCL28-201ENST00000361115 PTMAP06454 111 aaKnown RBP9.25□□□□□ -0.93
CCL28-201ENST00000361115 USP48Q86UV5 1035 aa9.25□□□□□ -0.93
CCL28-201ENST00000361115 C17orf53Q8N3J3 647 aaPredicted RBP9.25□□□□□ -0.93
CCL28-201ENST00000361115 CSRNP1Q96S65 589 aa9.25□□□□□ -0.93
CCL28-201ENST00000361115 GMLQ99445 158 aa9.25□□□□□ -0.93
CCL28-201ENST00000361115 LEMD3Q9Y2U8 911 aa9.25□□□□□ -0.93
CCL28-201ENST00000361115 A0A1B0GUL6 1792 aa9.25□□□□□ -0.93
CCL28-201ENST00000361115 GPR25O00155 361 aa9.25□□□□□ -0.93
CCL28-201ENST00000361115 ECE2O60344 883 aa9.25□□□□□ -0.93
CCL28-201ENST00000361115 CCDC152Q4G0S7 254 aa9.25□□□□□ -0.93
CCL28-201ENST00000361115 TMED8Q6PL24 325 aaPredicted RBP9.25□□□□□ -0.93
CCL28-201ENST00000361115 PLEKHF1Q96S99 279 aa9.25□□□□□ -0.93
CCL28-201ENST00000361115 COA1Q9GZY4 146 aa9.25□□□□□ -0.93
CCL28-201ENST00000361115 HIRAP54198 1017 aaPredicted RBP9.25□□□□□ -0.93
CCL28-201ENST00000361115 LDLRAD1Q5T700 205 aa9.25□□□□□ -0.93
CCL28-201ENST00000361115 PLCD3Q8N3E9 789 aa9.25□□□□□ -0.93
CCL28-201ENST00000361115 HELBQ8NG08 1087 aaPredicted RBP9.25□□□□□ -0.93
CCL28-201ENST00000361115 ANKRD2Q9GZV1 360 aa9.25□□□□□ -0.93
CCL28-201ENST00000361115 GGA1Q9UJY5 639 aa9.25□□□□□ -0.93
CCL28-201ENST00000361115 ZNF330Q9Y3S2 320 aaPredicted RBP9.25□□□□□ -0.93
CCL28-201ENST00000361115 KIF20AO95235 890 aa9.24□□□□□ -0.93
CCL28-201ENST00000361115 HMGB1P09429 215 aaKnown RBP9.24□□□□□ -0.93
CCL28-201ENST00000361115 STRIP1Q5VSL9 837 aa9.24□□□□□ -0.93
CCL28-201ENST00000361115 FOXD4L5Q5VV16 416 aaPredicted RBP9.24□□□□□ -0.93
CCL28-201ENST00000361115 CCDC191Q8NCU4 936 aa9.24□□□□□ -0.93
CCL28-201ENST00000361115 FOXD4L4Q8WXT5 416 aaPredicted RBP9.24□□□□□ -0.93
CCL28-201ENST00000361115 CDC5LQ99459 802 aaKnown RBP9.24□□□□□ -0.93
CCL28-201ENST00000361115 ZC3H12CQ9C0D7 883 aaKnown RBP9.24□□□□□ -0.93
CCL28-201ENST00000361115 DBF4Q9UBU7 674 aaPredicted RBP9.24□□□□□ -0.93
CCL28-201ENST00000361115 PRAMEF22A3QJZ6 481 aa9.24□□□□□ -0.93
CCL28-201ENST00000361115 TRAF5O00463 557 aa9.24□□□□□ -0.93
CCL28-201ENST00000361115 HABP4Q5JVS0 413 aaKnown RBP9.24□□□□□ -0.93
CCL28-201ENST00000361115 TRPM4Q8TD43 1214 aa9.24□□□□□ -0.93
CCL28-201ENST00000361115 USP17L3A6NCW0 530 aa9.23□□□□□ -0.93
CCL28-201ENST00000361115 USP17L4A6NCW7 530 aa9.23□□□□□ -0.93
CCL28-201ENST00000361115 PSMD14O00487 310 aa9.23□□□□□ -0.93
CCL28-201ENST00000361115 LETM1O95202 739 aaPredicted RBP9.23□□□□□ -0.93
CCL28-201ENST00000361115 PCCAP05165 728 aaPredicted RBP9.23□□□□□ -0.93
CCL28-201ENST00000361115 CT47B1P0C2W7 299 aaPredicted RBP9.23□□□□□ -0.93
CCL28-201ENST00000361115 U2AF1L5P0DN76 240 aaPredicted RBP9.23□□□□□ -0.93
CCL28-201ENST00000361115 GTF2F1P35269 517 aaKnown RBP eCLIP9.23□□□□□ -0.93
CCL28-201ENST00000361115 U2AF1Q01081 240 aaKnown RBP eCLIP9.23□□□□□ -0.93
CCL28-201ENST00000361115 RABEP1Q15276 862 aa9.23□□□□□ -0.93
CCL28-201ENST00000361115 USP17L1Q7RTZ2 530 aa9.23□□□□□ -0.93
CCL28-201ENST00000361115 CDC45O75419 566 aa9.23□□□□□ -0.93
CCL28-201ENST00000361115 NBPF11Q86T75 865 aa9.23□□□□□ -0.93
CCL28-201ENST00000361115 ZBTB38Q8NAP3 1195 aaPredicted RBP9.23□□□□□ -0.93
CCL28-201ENST00000361115 SPOCK2Q92563 424 aa9.23□□□□□ -0.93
CCL28-201ENST00000361115 ZBED3Q96IU2 234 aaPredicted RBP9.23□□□□□ -0.93
CCL28-201ENST00000361115 PRIMPOLQ96LW4 560 aa9.23□□□□□ -0.93
CCL28-201ENST00000361115 YDJCA8MPS7 323 aa9.22□□□□□ -0.93
CCL28-201ENST00000361115 DDX58O95786 925 aaKnown RBP9.22□□□□□ -0.93
CCL28-201ENST00000361115 USP17L8P0C7I0 530 aa9.22□□□□□ -0.93
CCL28-201ENST00000361115 GSPT1P15170 499 aaKnown RBP9.22□□□□□ -0.93
CCL28-201ENST00000361115 HMGN5P82970 282 aaKnown RBP9.22□□□□□ -0.93
CCL28-201ENST00000361115 PDIA6Q15084 440 aa9.22□□□□□ -0.93
CCL28-201ENST00000361115 SUPT20HL1Q3ZLR7 823 aa9.22□□□□□ -0.93
CCL28-201ENST00000361115 TBC1D16Q8TBP0 767 aa9.22□□□□□ -0.93
CCL28-201ENST00000361115 KCNV2Q8TDN2 545 aa9.22□□□□□ -0.93
CCL28-201ENST00000361115 NOLC1Q14978 699 aaKnown RBP eCLIP9.22□□□□□ -0.93
CCL28-201ENST00000361115 PHACTR3Q96KR7 559 aa9.22□□□□□ -0.93
CCL28-201ENST00000361115 PLA2G12BQ9BX93 195 aa9.22□□□□□ -0.93
CCL28-201ENST00000361115 TMEM51Q9NW97 253 aa9.22□□□□□ -0.93
CCL28-201ENST00000361115 TRMT112Q9UI30 125 aaKnown RBP9.22□□□□□ -0.93
CCL28-201ENST00000361115 PDE8AO60658 829 aa9.22□□□□□ -0.93
CCL28-201ENST00000361115 RPS8P62241 208 aaKnown RBP9.22□□□□□ -0.93
CCL28-201ENST00000361115 PIBF1Q8WXW3 757 aa9.22□□□□□ -0.93
CCL28-201ENST00000361115 TRIM35Q9UPQ4 493 aa9.22□□□□□ -0.93
CCL28-201ENST00000361115 TCHHQ07283 1943 aa9.21□□□□□ -0.93
CCL28-201ENST00000361115 KCNQ3O43525 872 aa9.21□□□□□ -0.93
CCL28-201ENST00000361115 HOXD11P31277 338 aaPredicted RBP9.21□□□□□ -0.93
CCL28-201ENST00000361115 TNFAIP1Q13829 316 aa9.21□□□□□ -0.93
CCL28-201ENST00000361115 SIRT2Q8IXJ6 389 aa9.21□□□□□ -0.93
CCL28-201ENST00000361115 TTC12Q9H892 705 aaPredicted RBP9.21□□□□□ -0.93
CCL28-201ENST00000361115 MYOZ2Q9NPC6 264 aa9.21□□□□□ -0.93
CCL28-201ENST00000361115 ANKRD13DQ6ZTN6 518 aa9.21□□□□□ -0.94
CCL28-201ENST00000361115 USP26Q9BXU7 913 aa9.21□□□□□ -0.94
CCL28-201ENST00000361115 TSPY26PQ9H489 355 aa9.21□□□□□ -0.94
CCL28-201ENST00000361115 TSPYL4Q9UJ04 414 aa9.21□□□□□ -0.94
CCL28-201ENST00000361115 KIF3AQ9Y496 699 aa9.21□□□□□ -0.94
CCL28-201ENST00000361115 FAM205AQ6ZU69 1335 aa9.21□□□□□ -0.94
CCL28-201ENST00000361115 CASP8AP2Q9UKL3 1982 aa9.21□□□□□ -0.94
CCL28-201ENST00000361115 APBB1O00213 710 aa9.2□□□□□ -0.94
CCL28-201ENST00000361115 U2AF2P26368 475 aaKnown RBP eCLIP9.2□□□□□ -0.94
CCL28-201ENST00000361115 TTLL7Q6ZT98 887 aa9.2□□□□□ -0.94
CCL28-201ENST00000361115 OGFOD1Q8N543 542 aa9.2□□□□□ -0.94
CCL28-201ENST00000361115 CWC22Q9HCG8 908 aaKnown RBP9.2□□□□□ -0.94
CCL28-201ENST00000361115 GGA3Q9NZ52 723 aa9.2□□□□□ -0.94
CCL28-201ENST00000361115 G3V3G9 751 aa9.2□□□□□ -0.94
CCL28-201ENST00000361115 CHL1O00533 1208 aa9.2□□□□□ -0.94
CCL28-201ENST00000361115 DCAF8Q5TAQ9 597 aa9.2□□□□□ -0.94
CCL28-201ENST00000361115 SPRYD7Q5W111 196 aa9.2□□□□□ -0.94
CCL28-201ENST00000361115 PTPN22Q9Y2R2 807 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms