RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 MFSD14BQ5SR56 506 aa23.9■■□□□ 1.42
CLN3-205ENST00000359984 NAA16Q6N069 864 aaPredicted RBP23.9■■□□□ 1.42
CLN3-205ENST00000359984 LARGE2Q8N3Y3 721 aa23.9■■□□□ 1.42
CLN3-205ENST00000359984 FBXW7Q969H0 707 aa23.9■■□□□ 1.42
CLN3-205ENST00000359984 TAOK3Q9H2K8 898 aa23.9■■□□□ 1.42
CLN3-205ENST00000359984 FER1L6Q2WGJ9 1857 aa23.88■■□□□ 1.41
CLN3-205ENST00000359984 GPAA1O43292 621 aa23.88■■□□□ 1.41
CLN3-205ENST00000359984 IGSF3O75054 1194 aa23.88■■□□□ 1.41
CLN3-205ENST00000359984 ADGRA1Q86SQ6 560 aa23.88■■□□□ 1.41
CLN3-205ENST00000359984 MAP4K1Q92918 833 aa23.88■■□□□ 1.41
CLN3-205ENST00000359984 IARSP41252 1262 aaKnown RBP23.87■■□□□ 1.41
CLN3-205ENST00000359984 DZIP1Q86YF9 867 aaKnown RBP23.87■■□□□ 1.41
CLN3-205ENST00000359984 YDJCA8MPS7 323 aa23.87■■□□□ 1.41
CLN3-205ENST00000359984 VPS53Q5VIR6 699 aa23.87■■□□□ 1.41
CLN3-205ENST00000359984 CERS5Q8N5B7 392 aa23.87■■□□□ 1.41
CLN3-205ENST00000359984 MXD3Q9BW11 206 aa23.87■■□□□ 1.41
CLN3-205ENST00000359984 ARFGEF1Q9Y6D6 1849 aa23.86■■□□□ 1.41
CLN3-205ENST00000359984 COL4A5P29400 1685 aa23.86■■□□□ 1.41
CLN3-205ENST00000359984 TMED8Q6PL24 325 aaPredicted RBP23.86■■□□□ 1.41
CLN3-205ENST00000359984 LTBP3Q9NS15 1303 aa23.86■■□□□ 1.41
CLN3-205ENST00000359984 STRIP1Q5VSL9 837 aa23.85■■□□□ 1.41
CLN3-205ENST00000359984 AIDAQ96BJ3 306 aa23.85■■□□□ 1.41
CLN3-205ENST00000359984 USP17L3A6NCW0 530 aa23.85■■□□□ 1.41
CLN3-205ENST00000359984 USP17L4A6NCW7 530 aa23.85■■□□□ 1.41
CLN3-205ENST00000359984 MBD4O95243 580 aa23.85■■□□□ 1.41
CLN3-205ENST00000359984 HSPD1P10809 573 aaKnown RBP23.85■■□□□ 1.41
CLN3-205ENST00000359984 HSPA4P34932 840 aa23.85■■□□□ 1.41
CLN3-205ENST00000359984 USP17L1Q7RTZ2 530 aa23.85■■□□□ 1.41
CLN3-205ENST00000359984 MIGA1Q8NAN2 632 aa23.85■■□□□ 1.41
CLN3-205ENST00000359984 STRBPQ96SI9 672 aaKnown RBP23.85■■□□□ 1.41
CLN3-205ENST00000359984 RBM8AQ9Y5S9 174 aaKnown RBP23.85■■□□□ 1.41
CLN3-205ENST00000359984 SCN9AQ15858 1988 aa23.84■■□□□ 1.41
CLN3-205ENST00000359984 DACT2Q5SW24 774 aa23.84■■□□□ 1.41
CLN3-205ENST00000359984 DSCC1Q9BVC3 393 aa23.84■■□□□ 1.41
CLN3-205ENST00000359984 SUGT1Q9Y2Z0 365 aa23.84■■□□□ 1.41
CLN3-205ENST00000359984 FOXP2O15409 715 aa23.83■■□□□ 1.41
CLN3-205ENST00000359984 MCCP23508 829 aa23.83■■□□□ 1.41
CLN3-205ENST00000359984 RASSF7Q02833 373 aa23.83■■□□□ 1.41
CLN3-205ENST00000359984 KIF2CQ99661 725 aa23.83■■□□□ 1.41
CLN3-205ENST00000359984 ARMT1Q9H993 441 aa23.83■■□□□ 1.41
CLN3-205ENST00000359984 MAGEB6P1A0A0J9YX57 407 aa23.83■■□□□ 1.4
CLN3-205ENST00000359984 FKBP1AP62942 108 aaKnown RBP23.83■■□□□ 1.4
CLN3-205ENST00000359984 GSTO1P78417 241 aa23.83■■□□□ 1.4
CLN3-205ENST00000359984 DIXDC1Q155Q3 683 aa23.83■■□□□ 1.4
CLN3-205ENST00000359984 NIM1KQ8IY84 436 aa23.83■■□□□ 1.4
CLN3-205ENST00000359984 LCORLQ8N3X6 602 aa23.83■■□□□ 1.4
CLN3-205ENST00000359984 PALD1Q9ULE6 856 aa23.83■■□□□ 1.4
CLN3-205ENST00000359984 MAST2Q6P0Q8 1798 aa23.83■■□□□ 1.4
CLN3-205ENST00000359984 NECTIN1Q15223 517 aa23.82■■□□□ 1.4
CLN3-205ENST00000359984 RIOK1Q9BRS2 568 aaKnown RBP23.82■■□□□ 1.4
CLN3-205ENST00000359984 ZNRF3Q9ULT6 936 aa23.82■■□□□ 1.4
CLN3-205ENST00000359984 CCDC88AQ3V6T2 1871 aa23.82■■□□□ 1.4
CLN3-205ENST00000359984 PRELPP51888 382 aa23.81■■□□□ 1.4
CLN3-205ENST00000359984 U3KPZ7 1027 aaPredicted RBP23.81■■□□□ 1.4
CLN3-205ENST00000359984 DYNLL1P63167 89 aaKnown RBP23.81■■□□□ 1.4
CLN3-205ENST00000359984 LDHCP07864 332 aa23.8■■□□□ 1.4
CLN3-205ENST00000359984 SRCAPQ6ZRS2 3230 aa23.8■■□□□ 1.4
CLN3-205ENST00000359984 F8W031 263 aaPredicted RBP23.79■■□□□ 1.4
CLN3-205ENST00000359984 RAD17O75943 681 aa23.79■■□□□ 1.4
CLN3-205ENST00000359984 CREB3L3Q68CJ9 461 aa23.79■■□□□ 1.4
CLN3-205ENST00000359984 ARHGAP27Q6ZUM4 889 aa23.79■■□□□ 1.4
CLN3-205ENST00000359984 TTF2Q9UNY4 1162 aaKnown RBP23.79■■□□□ 1.4
CLN3-205ENST00000359984 MROH7-TTC4A0A0A0MT08 1334 aa23.79■■□□□ 1.4
CLN3-205ENST00000359984 ZNF646O15015 1829 aaPredicted RBP23.79■■□□□ 1.4
CLN3-205ENST00000359984 RASEFQ8IZ41 740 aa23.79■■□□□ 1.4
CLN3-205ENST00000359984 JDP2Q8WYK2 163 aa23.79■■□□□ 1.4
CLN3-205ENST00000359984 KCNB2Q92953 911 aa23.79■■□□□ 1.4
CLN3-205ENST00000359984 FAM163AQ96GL9 167 aaPredicted RBP23.79■■□□□ 1.4
CLN3-205ENST00000359984 AATFQ9NY61 560 aaKnown RBP eCLIP23.79■■□□□ 1.4
CLN3-205ENST00000359984 PATL2C9JE40 543 aaKnown RBP23.78■■□□□ 1.4
CLN3-205ENST00000359984 SLC27A2O14975 620 aa23.78■■□□□ 1.4
CLN3-205ENST00000359984 PRKAB2O43741 272 aa23.78■■□□□ 1.4
CLN3-205ENST00000359984 GNAT2P19087 354 aa23.78■■□□□ 1.4
CLN3-205ENST00000359984 ANAPC15P60006 121 aa23.78■■□□□ 1.4
CLN3-205ENST00000359984 SLF2Q8IX21 1173 aa23.78■■□□□ 1.4
CLN3-205ENST00000359984 SLC4A4Q9Y6R1 1079 aa23.78■■□□□ 1.4
CLN3-205ENST00000359984 VIL1P09327 827 aaKnown RBP23.77■■□□□ 1.4
CLN3-205ENST00000359984 YBX3P16989 372 aaKnown RBP eCLIP23.77■■□□□ 1.4
CLN3-205ENST00000359984 IL17RAQ96F46 866 aa23.77■■□□□ 1.4
CLN3-205ENST00000359984 SNX14Q9Y5W7 946 aa23.77■■□□□ 1.4
CLN3-205ENST00000359984 GSG1L2A8MUP6 293 aa23.77■■□□□ 1.4
CLN3-205ENST00000359984 PSMD14O00487 310 aa23.77■■□□□ 1.4
CLN3-205ENST00000359984 FGAP02671 866 aa23.77■■□□□ 1.4
CLN3-205ENST00000359984 ANP32AP39687 249 aaKnown RBP23.77■■□□□ 1.4
CLN3-205ENST00000359984 KIAA0825Q8IV33 1275 aa23.77■■□□□ 1.4
CLN3-205ENST00000359984 GAKO14976 1311 aa23.77■■□□□ 1.4
CLN3-205ENST00000359984 APPP05067 770 aa23.76■■□□□ 1.39
CLN3-205ENST00000359984 PPP4CP60510 307 aa23.76■■□□□ 1.39
CLN3-205ENST00000359984 GPR75-ASB3A0A0A6YYF3 556 aa23.75■■□□□ 1.39
CLN3-205ENST00000359984 SCNN1DP51172 638 aa23.75■■□□□ 1.39
CLN3-205ENST00000359984 CXCL9Q07325 125 aa23.75■■□□□ 1.39
CLN3-205ENST00000359984 ALX1Q15699 326 aa23.75■■□□□ 1.39
CLN3-205ENST00000359984 RNF20Q5VTR2 975 aa23.75■■□□□ 1.39
CLN3-205ENST00000359984 RSBN1LQ6PCB5 846 aaPredicted RBP23.75■■□□□ 1.39
CLN3-205ENST00000359984 EPB41L4AQ9HCS5 686 aaPredicted RBP23.75■■□□□ 1.39
CLN3-205ENST00000359984 CTNNA3Q9UI47 895 aa23.75■■□□□ 1.39
CLN3-205ENST00000359984 DAGLAQ9Y4D2 1042 aa23.75■■□□□ 1.39
CLN3-205ENST00000359984 MYH2Q9UKX2 1941 aa23.75■■□□□ 1.39
CLN3-205ENST00000359984 BAG3O95817 575 aa23.75■■□□□ 1.39
CLN3-205ENST00000359984 IFNL3Q8IZI9 196 aa23.75■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms