RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 GYG1P46976 350 aa8.34□□□□□ -1.07
VPS13A-202ENST00000357409 CETN1Q12798 172 aa8.34□□□□□ -1.07
VPS13A-202ENST00000357409 RHOXF2Q9BQY4 288 aa8.34□□□□□ -1.07
VPS13A-202ENST00000357409 SEC62Q99442 399 aaKnown RBP8.34□□□□□ -1.07
VPS13A-202ENST00000357409 DNAI1Q9UI46 699 aa8.34□□□□□ -1.07
VPS13A-202ENST00000357409 TTC21BQ7Z4L5 1316 aa8.34□□□□□ -1.07
VPS13A-202ENST00000357409 A0A1B0GUL7 405 aa8.34□□□□□ -1.07
VPS13A-202ENST00000357409 ZAP70P43403 619 aa8.34□□□□□ -1.07
VPS13A-202ENST00000357409 ESR2Q92731 530 aa8.34□□□□□ -1.07
VPS13A-202ENST00000357409 C6orf50Q9HD87 102 aa8.34□□□□□ -1.07
VPS13A-202ENST00000357409 GUCA1BQ9UMX6 200 aa8.34□□□□□ -1.07
VPS13A-202ENST00000357409 FSD2A1L4K1 749 aa8.34□□□□□ -1.08
VPS13A-202ENST00000357409 SEC24BO95487 1268 aa8.34□□□□□ -1.08
VPS13A-202ENST00000357409 RBM17Q96I25 401 aaKnown RBP8.34□□□□□ -1.08
VPS13A-202ENST00000357409 ARHGEF11O15085 1522 aa8.33□□□□□ -1.08
VPS13A-202ENST00000357409 ZHX1Q9UKY1 873 aaPredicted RBP8.33□□□□□ -1.08
VPS13A-202ENST00000357409 H7C1D1 291 aa8.33□□□□□ -1.08
VPS13A-202ENST00000357409 ZNF165P49910 485 aa8.33□□□□□ -1.08
VPS13A-202ENST00000357409 POLIQ9UNA4 740 aa8.33□□□□□ -1.08
VPS13A-202ENST00000357409 NBPF7P0C2Y1 421 aaPredicted RBP8.33□□□□□ -1.08
VPS13A-202ENST00000357409 OTUD7AQ8TE49 926 aaPredicted RBP8.33□□□□□ -1.08
VPS13A-202ENST00000357409 SMARCC1Q92922 1105 aaPredicted RBP8.33□□□□□ -1.08
VPS13A-202ENST00000357409 DMRT2Q9Y5R5 561 aa8.33□□□□□ -1.08
VPS13A-202ENST00000357409 NPHP3Q7Z494 1330 aa8.33□□□□□ -1.08
VPS13A-202ENST00000357409 ALAS1P13196 640 aa8.33□□□□□ -1.08
VPS13A-202ENST00000357409 CCDC102BQ68D86 513 aa8.33□□□□□ -1.08
VPS13A-202ENST00000357409 DTHD1Q6ZMT9 781 aa8.33□□□□□ -1.08
VPS13A-202ENST00000357409 CNBD1Q8NA66 436 aa8.33□□□□□ -1.08
VPS13A-202ENST00000357409 FAM169AQ9Y6X4 670 aa8.33□□□□□ -1.08
VPS13A-202ENST00000357409 UQCRFS1P1P0C7P4 283 aa8.33□□□□□ -1.08
VPS13A-202ENST00000357409 AK2P54819 239 aa8.33□□□□□ -1.08
VPS13A-202ENST00000357409 OSTNP61366 133 aa8.33□□□□□ -1.08
VPS13A-202ENST00000357409 ST7Q9NRC1 585 aa8.33□□□□□ -1.08
VPS13A-202ENST00000357409 STAMBPO95630 424 aa8.33□□□□□ -1.08
VPS13A-202ENST00000357409 NAA25Q14CX7 972 aa8.33□□□□□ -1.08
VPS13A-202ENST00000357409 LEO1Q8WVC0 666 aaPredicted RBP8.33□□□□□ -1.08
VPS13A-202ENST00000357409 TSNARE1Q96NA8 513 aa8.33□□□□□ -1.08
VPS13A-202ENST00000357409 FYCO1Q9BQS8 1478 aa8.33□□□□□ -1.08
VPS13A-202ENST00000357409 RAD17O75943 681 aa8.32□□□□□ -1.08
VPS13A-202ENST00000357409 GNL1P36915 607 aaPredicted RBP8.32□□□□□ -1.08
VPS13A-202ENST00000357409 CCDC186Q7Z3E2 898 aa8.32□□□□□ -1.08
VPS13A-202ENST00000357409 SUGCTQ9HAC7 445 aa8.32□□□□□ -1.08
VPS13A-202ENST00000357409 PFDN4Q9NQP4 134 aa8.32□□□□□ -1.08
VPS13A-202ENST00000357409 BRD4O60885 1362 aaPredicted RBP8.32□□□□□ -1.08
VPS13A-202ENST00000357409 AGRPO00253 132 aa8.32□□□□□ -1.08
VPS13A-202ENST00000357409 TRAF3IP1Q8TDR0 691 aaPredicted RBP8.32□□□□□ -1.08
VPS13A-202ENST00000357409 USP40Q9NVE5 1235 aa8.32□□□□□ -1.08
VPS13A-202ENST00000357409 ZBTB7AO95365 584 aa8.32□□□□□ -1.08
VPS13A-202ENST00000357409 GOLGA6CA6NDK9 693 aa8.32□□□□□ -1.08
VPS13A-202ENST00000357409 GOLGA6BA6NDN3 693 aa8.32□□□□□ -1.08
VPS13A-202ENST00000357409 GOLGA6DP0CG33 693 aa8.32□□□□□ -1.08
VPS13A-202ENST00000357409 ITKQ08881 620 aa8.32□□□□□ -1.08
VPS13A-202ENST00000357409 TBC1D5Q92609 795 aa8.32□□□□□ -1.08
VPS13A-202ENST00000357409 MLXIPQ9HAP2 919 aa8.32□□□□□ -1.08
VPS13A-202ENST00000357409 GOLGA6AQ9NYA3 693 aa8.32□□□□□ -1.08
VPS13A-202ENST00000357409 LRRC43Q8N309 656 aa8.32□□□□□ -1.08
VPS13A-202ENST00000357409 MMS19Q96T76 1030 aa8.32□□□□□ -1.08
VPS13A-202ENST00000357409 FERP16591 822 aa8.32□□□□□ -1.08
VPS13A-202ENST00000357409 PDE4DQ08499 809 aa8.32□□□□□ -1.08
VPS13A-202ENST00000357409 KRT79Q5XKE5 535 aa8.32□□□□□ -1.08
VPS13A-202ENST00000357409 RAB3IL1Q8TBN0 382 aa8.32□□□□□ -1.08
VPS13A-202ENST00000357409 ALS2CR12Q96Q35 445 aa8.32□□□□□ -1.08
VPS13A-202ENST00000357409 MED10Q9BTT4 135 aa8.32□□□□□ -1.08
VPS13A-202ENST00000357409 INPP5FQ9Y2H2 1132 aa8.32□□□□□ -1.08
VPS13A-202ENST00000357409 AKAP4Q5JQC9 854 aa8.32□□□□□ -1.08
VPS13A-202ENST00000357409 TTF2Q9UNY4 1162 aaKnown RBP8.32□□□□□ -1.08
VPS13A-202ENST00000357409 EIF3JO75822 258 aaKnown RBP8.32□□□□□ -1.08
VPS13A-202ENST00000357409 VPS36Q86VN1 386 aa8.32□□□□□ -1.08
VPS13A-202ENST00000357409 PCDHB13Q9Y5F0 798 aa8.32□□□□□ -1.08
VPS13A-202ENST00000357409 SNAP23O00161 211 aa8.31□□□□□ -1.08
VPS13A-202ENST00000357409 KIF22Q14807 665 aa8.31□□□□□ -1.08
VPS13A-202ENST00000357409 DLGAP5Q15398 846 aa8.31□□□□□ -1.08
VPS13A-202ENST00000357409 CTR9Q6PD62 1173 aa8.31□□□□□ -1.08
VPS13A-202ENST00000357409 CHAMP1Q96JM3 812 aa8.31□□□□□ -1.08
VPS13A-202ENST00000357409 TEX13AQ9BXU3 409 aaPredicted RBP8.31□□□□□ -1.08
VPS13A-202ENST00000357409 ZEB2O60315 1214 aa8.31□□□□□ -1.08
VPS13A-202ENST00000357409 GSTO1P78417 241 aa8.31□□□□□ -1.08
VPS13A-202ENST00000357409 MICAL1Q8TDZ2 1067 aa8.31□□□□□ -1.08
VPS13A-202ENST00000357409 CWC15Q9P013 229 aaKnown RBP8.31□□□□□ -1.08
VPS13A-202ENST00000357409 AFG3L2Q9Y4W6 797 aa8.31□□□□□ -1.08
VPS13A-202ENST00000357409 IKBKGQ9Y6K9 419 aa8.31□□□□□ -1.08
VPS13A-202ENST00000357409 NOS1P29475 1434 aa8.31□□□□□ -1.08
VPS13A-202ENST00000357409 RRBP1Q9P2E9 1410 aaKnown RBP8.31□□□□□ -1.08
VPS13A-202ENST00000357409 ERLIN1O75477 346 aa8.31□□□□□ -1.08
VPS13A-202ENST00000357409 UBXN1Q04323 297 aa8.31□□□□□ -1.08
VPS13A-202ENST00000357409 CCDC183Q5T5S1 534 aa8.31□□□□□ -1.08
VPS13A-202ENST00000357409 TPH2Q8IWU9 490 aa8.31□□□□□ -1.08
VPS13A-202ENST00000357409 XPO5Q9HAV4 1204 aaKnown RBP eCLIP8.31□□□□□ -1.08
VPS13A-202ENST00000357409 MARK3P27448 753 aa8.31□□□□□ -1.08
VPS13A-202ENST00000357409 CACNB1Q02641 598 aaPredicted RBP8.31□□□□□ -1.08
VPS13A-202ENST00000357409 MAK16Q9BXY0 300 aaKnown RBP8.31□□□□□ -1.08
VPS13A-202ENST00000357409 NYXQ9GZU5 481 aa8.31□□□□□ -1.08
VPS13A-202ENST00000357409 MOSPD1Q9UJG1 213 aa8.31□□□□□ -1.08
VPS13A-202ENST00000357409 GGA1Q9UJY5 639 aa8.31□□□□□ -1.08
VPS13A-202ENST00000357409 RMDN2Q96LZ7 410 aa8.31□□□□□ -1.08
VPS13A-202ENST00000357409 GBP3Q9H0R5 595 aa8.31□□□□□ -1.08
VPS13A-202ENST00000357409 DIXDC1Q155Q3 683 aa8.31□□□□□ -1.08
VPS13A-202ENST00000357409 USPL1Q5W0Q7 1092 aa8.31□□□□□ -1.08
VPS13A-202ENST00000357409 POLR3EQ9NVU0 708 aa8.31□□□□□ -1.08
VPS13A-202ENST00000357409 TSR3Q9UJK0 312 aaKnown RBP8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms