RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 STXBP4Q6ZWJ1 553 aa22.05■■□□□ 1.12
CCDC88B-202ENST00000356786 CDC37L1Q7L3B6 337 aa22.05■■□□□ 1.12
CCDC88B-202ENST00000356786 POTEDQ86YR6 584 aa22.05■■□□□ 1.12
CCDC88B-202ENST00000356786 ADGBQ8N7X0 1667 aa22.05■■□□□ 1.12
CCDC88B-202ENST00000356786 MTHFSDQ2M296 383 aaKnown RBP22.05■■□□□ 1.12
CCDC88B-202ENST00000356786 VPS16Q9H269 839 aa22.05■■□□□ 1.12
CCDC88B-202ENST00000356786 ZNF652Q9Y2D9 606 aa22.05■■□□□ 1.12
CCDC88B-202ENST00000356786 ZMYM3Q14202 1370 aa22.05■■□□□ 1.12
CCDC88B-202ENST00000356786 SLC27A2O14975 620 aa22.05■■□□□ 1.12
CCDC88B-202ENST00000356786 ANO1Q5XXA6 986 aa22.05■■□□□ 1.12
CCDC88B-202ENST00000356786 NEK11Q8NG66 645 aa22.05■■□□□ 1.12
CCDC88B-202ENST00000356786 PPP1R14CQ8TAE6 165 aa22.05■■□□□ 1.12
CCDC88B-202ENST00000356786 GPT2Q8TD30 523 aa22.05■■□□□ 1.12
CCDC88B-202ENST00000356786 SLC4A4Q9Y6R1 1079 aa22.05■■□□□ 1.12
CCDC88B-202ENST00000356786 RNF113AO15541 343 aaKnown RBP22.04■■□□□ 1.12
CCDC88B-202ENST00000356786 TBC1D5Q92609 795 aa22.04■■□□□ 1.12
CCDC88B-202ENST00000356786 G2E3Q7L622 706 aa22.04■■□□□ 1.12
CCDC88B-202ENST00000356786 KDM6BO15054 1643 aa22.04■■□□□ 1.12
CCDC88B-202ENST00000356786 ZMYM4Q5VZL5 1548 aa22.04■■□□□ 1.12
CCDC88B-202ENST00000356786 TBCAO75347 108 aaKnown RBP22.04■■□□□ 1.12
CCDC88B-202ENST00000356786 MXRA7P84157 204 aa22.04■■□□□ 1.12
CCDC88B-202ENST00000356786 CUL5Q93034 780 aa22.04■■□□□ 1.12
CCDC88B-202ENST00000356786 KCNH3Q9ULD8 1083 aa22.04■■□□□ 1.12
CCDC88B-202ENST00000356786 BICDL2A1A5D9 508 aa22.03■■□□□ 1.12
CCDC88B-202ENST00000356786 PRPHP41219 470 aa22.03■■□□□ 1.12
CCDC88B-202ENST00000356786 CHAMP1Q96JM3 812 aa22.03■■□□□ 1.12
CCDC88B-202ENST00000356786 CEP83Q9Y592 693 aa22.03■■□□□ 1.12
CCDC88B-202ENST00000356786 NCOA5Q9HCD5 579 aaKnown RBP22.03■■□□□ 1.12
CCDC88B-202ENST00000356786 DDX12PQ92771 950 aa22.03■■□□□ 1.12
CCDC88B-202ENST00000356786 ANKIB1Q9P2G1 1089 aa22.03■■□□□ 1.12
CCDC88B-202ENST00000356786 ZRANB1Q9UGI0 708 aa22.03■■□□□ 1.12
CCDC88B-202ENST00000356786 IFNL2Q8IZJ0 200 aa22.03■■□□□ 1.12
CCDC88B-202ENST00000356786 ZNF202O95125 648 aa22.02■■□□□ 1.12
CCDC88B-202ENST00000356786 MKRN1Q9UHC7 482 aaKnown RBP22.02■■□□□ 1.12
CCDC88B-202ENST00000356786 NFE2L3Q9Y4A8 694 aa22.02■■□□□ 1.12
CCDC88B-202ENST00000356786 UBLCP1Q8WVY7 318 aaPredicted RBP22.02■■□□□ 1.12
CCDC88B-202ENST00000356786 XPO4Q9C0E2 1151 aaKnown RBP22.02■■□□□ 1.12
CCDC88B-202ENST00000356786 ACTN2P35609 894 aa22.02■■□□□ 1.11
CCDC88B-202ENST00000356786 OTUD7BQ6GQQ9 843 aa22.02■■□□□ 1.11
CCDC88B-202ENST00000356786 C8orf74Q6P047 294 aa22.02■■□□□ 1.11
CCDC88B-202ENST00000356786 SPATA24Q86W54 205 aa22.02■■□□□ 1.11
CCDC88B-202ENST00000356786 IQCGQ9H095 443 aaKnown RBP22.02■■□□□ 1.11
CCDC88B-202ENST00000356786 CYP7A1P22680 504 aa22.01■■□□□ 1.11
CCDC88B-202ENST00000356786 GOLGA6BA6NDN3 693 aa22.01■■□□□ 1.11
CCDC88B-202ENST00000356786 CCDC160A6NGH7 325 aa22.01■■□□□ 1.11
CCDC88B-202ENST00000356786 TBC1D8BQ0IIM8 1120 aa22.01■■□□□ 1.11
CCDC88B-202ENST00000356786 HEATR3Q7Z4Q2 680 aa22.01■■□□□ 1.11
CCDC88B-202ENST00000356786 DMTNQ08495 405 aa22.01■■□□□ 1.11
CCDC88B-202ENST00000356786 LLPHQ9BRT6 129 aaKnown RBP22.01■■□□□ 1.11
CCDC88B-202ENST00000356786 A0A1W2PP64 1363 aa22■■□□□ 1.11
CCDC88B-202ENST00000356786 YTHDC2Q9H6S0 1430 aaKnown RBP22■■□□□ 1.11
CCDC88B-202ENST00000356786 A6NNZ2 444 aa22■■□□□ 1.11
CCDC88B-202ENST00000356786 LACTBP83111 547 aaPredicted RBP22■■□□□ 1.11
CCDC88B-202ENST00000356786 MTX1Q13505 466 aa22■■□□□ 1.11
CCDC88B-202ENST00000356786 TUBB8Q3ZCM7 444 aa22■■□□□ 1.11
CCDC88B-202ENST00000356786 CCDC25Q86WR0 208 aa22■■□□□ 1.11
CCDC88B-202ENST00000356786 KLHL34Q8N239 644 aa22■■□□□ 1.11
CCDC88B-202ENST00000356786 KCNK9Q9NPC2 374 aa22■■□□□ 1.11
CCDC88B-202ENST00000356786 MCM7P33993 719 aa22■■□□□ 1.11
CCDC88B-202ENST00000356786 TFCP2Q12800 502 aa22■■□□□ 1.11
CCDC88B-202ENST00000356786 SLC39A6Q13433 755 aa22■■□□□ 1.11
CCDC88B-202ENST00000356786 CYP26C1Q6V0L0 522 aa22■■□□□ 1.11
CCDC88B-202ENST00000356786 GPR161Q8N6U8 529 aaKnown RBP22■■□□□ 1.11
CCDC88B-202ENST00000356786 TTC21AQ8NDW8 1320 aa22■■□□□ 1.11
CCDC88B-202ENST00000356786 NLRP12P59046 1061 aa21.99■■□□□ 1.11
CCDC88B-202ENST00000356786 VIMP08670 466 aaKnown RBP21.99■■□□□ 1.11
CCDC88B-202ENST00000356786 FAM227BQ96M60 508 aa21.99■■□□□ 1.11
CCDC88B-202ENST00000356786 CABP5Q9NP86 173 aa21.99■■□□□ 1.11
CCDC88B-202ENST00000356786 KRT2P35908 639 aa21.99■■□□□ 1.11
CCDC88B-202ENST00000356786 KRT28Q7Z3Y7 464 aa21.99■■□□□ 1.11
CCDC88B-202ENST00000356786 TSGA10Q9BZW7 698 aa21.99■■□□□ 1.11
CCDC88B-202ENST00000356786 MTRF1LQ9UGC7 380 aaKnown RBP21.99■■□□□ 1.11
CCDC88B-202ENST00000356786 IQSEC3Q9UPP2 1182 aaPredicted RBP21.99■■□□□ 1.11
CCDC88B-202ENST00000356786 MLKLQ8NB16 471 aa21.99■■□□□ 1.11
CCDC88B-202ENST00000356786 PLIN2Q99541 437 aa21.99■■□□□ 1.11
CCDC88B-202ENST00000356786 VWA3AA6NCI4 1184 aa21.98■■□□□ 1.11
CCDC88B-202ENST00000356786 CALML3P27482 149 aa21.98■■□□□ 1.11
CCDC88B-202ENST00000356786 KRT9P35527 623 aa21.98■■□□□ 1.11
CCDC88B-202ENST00000356786 CLNS1AP54105 237 aaKnown RBP21.98■■□□□ 1.11
CCDC88B-202ENST00000356786 CRNKL1Q9BZJ0 848 aaKnown RBP21.98■■□□□ 1.11
CCDC88B-202ENST00000356786 PYCARDQ9ULZ3 195 aa21.98■■□□□ 1.11
CCDC88B-202ENST00000356786 TRIM35Q9UPQ4 493 aa21.98■■□□□ 1.11
CCDC88B-202ENST00000356786 MYO5CQ9NQX4 1742 aa21.98■■□□□ 1.11
CCDC88B-202ENST00000356786 GNAQP50148 359 aa21.98■■□□□ 1.11
CCDC88B-202ENST00000356786 RILPL1Q5EBL4 403 aa21.98■■□□□ 1.11
CCDC88B-202ENST00000356786 SETDB1Q15047 1291 aa21.98■■□□□ 1.11
CCDC88B-202ENST00000356786 SAMD9LQ8IVG5 1584 aa21.98■■□□□ 1.11
CCDC88B-202ENST00000356786 JAK2O60674 1132 aa21.98■■□□□ 1.11
CCDC88B-202ENST00000356786 GSPT1P15170 499 aaKnown RBP21.98■■□□□ 1.11
CCDC88B-202ENST00000356786 ETF1P62495 437 aaKnown RBP21.98■■□□□ 1.11
CCDC88B-202ENST00000356786 STIM2Q9P246 746 aa21.98■■□□□ 1.11
CCDC88B-202ENST00000356786 ATP10AO60312 1499 aa21.98■■□□□ 1.11
CCDC88B-202ENST00000356786 NUTM2BA6NNL0 878 aaPredicted RBP21.97■■□□□ 1.11
CCDC88B-202ENST00000356786 NUTM2EB1AL46 878 aaPredicted RBP21.97■■□□□ 1.11
CCDC88B-202ENST00000356786 TRIM14Q14142 442 aa21.97■■□□□ 1.11
CCDC88B-202ENST00000356786 UTP14CQ5TAP6 766 aaKnown RBP21.97■■□□□ 1.11
CCDC88B-202ENST00000356786 TMTC1Q8IUR5 882 aa21.97■■□□□ 1.11
CCDC88B-202ENST00000356786 CABS1Q96KC9 395 aa21.97■■□□□ 1.11
CCDC88B-202ENST00000356786 SMC6Q96SB8 1091 aa21.97■■□□□ 1.11
CCDC88B-202ENST00000356786 CDC5LQ99459 802 aaKnown RBP21.97■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms