RNA–Protein interactions for RNA: ENST00000355497.9

LMX1B-201, Transcript of LIM homeobox transcription factor 1 beta, humanhuman

TSL 1 (best) BASIC

Gene LMX1B, Length 5,809 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1B-201ENST00000355497 ERCC5P28715 1186 aaPredicted RBP16.72■□□□□ 0.27
LMX1B-201ENST00000355497 ANKRD44Q8N8A2 993 aa16.72■□□□□ 0.27
LMX1B-201ENST00000355497 IQUBQ8NA54 791 aa16.72■□□□□ 0.27
LMX1B-201ENST00000355497 XAGE3Q8WTP9 111 aa16.71■□□□□ 0.27
LMX1B-201ENST00000355497 FEZ2Q9UHY8 353 aaPredicted RBP16.71■□□□□ 0.27
LMX1B-201ENST00000355497 PTPDC1A2A3K4 754 aa16.71■□□□□ 0.27
LMX1B-201ENST00000355497 PFDN4Q9NQP4 134 aa16.71■□□□□ 0.27
LMX1B-201ENST00000355497 RBM28Q9NW13 759 aaKnown RBP16.71■□□□□ 0.27
LMX1B-201ENST00000355497 ZBTB21Q9ULJ3 1066 aa16.71■□□□□ 0.27
LMX1B-201ENST00000355497 SCAF11Q99590 1463 aaKnown RBP16.71■□□□□ 0.27
LMX1B-201ENST00000355497 A0A1B0GUL7 405 aa16.71■□□□□ 0.27
LMX1B-201ENST00000355497 KRT5P13647 590 aa16.71■□□□□ 0.27
LMX1B-201ENST00000355497 GBP1P32455 592 aa16.71■□□□□ 0.27
LMX1B-201ENST00000355497 CTNND2Q9UQB3 1225 aa16.71■□□□□ 0.27
LMX1B-201ENST00000355497 TTC41PQ6P2S7 1318 aa16.71■□□□□ 0.27
LMX1B-201ENST00000355497 EPB41P11171 864 aaKnown RBP16.71■□□□□ 0.27
LMX1B-201ENST00000355497 RASA3Q14644 834 aa16.71■□□□□ 0.27
LMX1B-201ENST00000355497 GEN1Q17RS7 908 aa16.71■□□□□ 0.27
LMX1B-201ENST00000355497 CCDC117Q8IWD4 279 aaPredicted RBP16.71■□□□□ 0.27
LMX1B-201ENST00000355497 UBE2Q2Q8WVN8 375 aa16.71■□□□□ 0.27
LMX1B-201ENST00000355497 SETDB2Q96T68 719 aa16.71■□□□□ 0.27
LMX1B-201ENST00000355497 FAM204AQ9H8W3 233 aa16.71■□□□□ 0.27
LMX1B-201ENST00000355497 GRM8O00222 908 aa16.71■□□□□ 0.26
LMX1B-201ENST00000355497 AK2P54819 239 aa16.71■□□□□ 0.26
LMX1B-201ENST00000355497 LMNTD2Q8IXW0 634 aa16.71■□□□□ 0.26
LMX1B-201ENST00000355497 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.7■□□□□ 0.26
LMX1B-201ENST00000355497 VWA3BQ502W6 1294 aa16.7■□□□□ 0.26
LMX1B-201ENST00000355497 CCDC65Q8IXS2 484 aa16.7■□□□□ 0.26
LMX1B-201ENST00000355497 VCX3BQ9H321 246 aa16.7■□□□□ 0.26
LMX1B-201ENST00000355497 NCOA1Q15788 1441 aa16.7■□□□□ 0.26
LMX1B-201ENST00000355497 E7EVH7 732 aa16.7■□□□□ 0.26
LMX1B-201ENST00000355497 CASQ2O14958 399 aaPredicted RBP16.7■□□□□ 0.26
LMX1B-201ENST00000355497 GIGYF1O75420 1035 aaPredicted RBP16.7■□□□□ 0.26
LMX1B-201ENST00000355497 EVCP57679 992 aa16.7■□□□□ 0.26
LMX1B-201ENST00000355497 TAF12Q16514 161 aa16.7■□□□□ 0.26
LMX1B-201ENST00000355497 WDR44Q5JSH3 913 aa16.7■□□□□ 0.26
LMX1B-201ENST00000355497 PPP1R21Q6ZMI0 780 aa16.7■□□□□ 0.26
LMX1B-201ENST00000355497 KRBA2Q6ZNG9 492 aa16.7■□□□□ 0.26
LMX1B-201ENST00000355497 SV2BQ7L1I2 683 aa16.7■□□□□ 0.26
LMX1B-201ENST00000355497 ELP1O95163 1332 aa16.7■□□□□ 0.26
LMX1B-201ENST00000355497 PPP1R2P41236 205 aa16.7■□□□□ 0.26
LMX1B-201ENST00000355497 OGFOD1Q8N543 542 aa16.7■□□□□ 0.26
LMX1B-201ENST00000355497 PLIN2Q99541 437 aa16.7■□□□□ 0.26
LMX1B-201ENST00000355497 HPDP32754 393 aaPredicted RBP16.7■□□□□ 0.26
LMX1B-201ENST00000355497 TRIM14Q14142 442 aa16.7■□□□□ 0.26
LMX1B-201ENST00000355497 GTF3C6Q969F1 213 aa16.7■□□□□ 0.26
LMX1B-201ENST00000355497 CPSF2Q9P2I0 782 aaKnown RBP16.7■□□□□ 0.26
LMX1B-201ENST00000355497 HSPA1LP34931 641 aa16.69■□□□□ 0.26
LMX1B-201ENST00000355497 MYL5Q02045 173 aa16.69■□□□□ 0.26
LMX1B-201ENST00000355497 LMBR1LQ6UX01 489 aa16.69■□□□□ 0.26
LMX1B-201ENST00000355497 RAB3GAP1Q15042 981 aa16.69■□□□□ 0.26
LMX1B-201ENST00000355497 CREB3L3Q68CJ9 461 aa16.69■□□□□ 0.26
LMX1B-201ENST00000355497 NAPGQ99747 312 aaPredicted RBP16.69■□□□□ 0.26
LMX1B-201ENST00000355497 NOC4LQ9BVI4 516 aaKnown RBP16.69■□□□□ 0.26
LMX1B-201ENST00000355497 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.69■□□□□ 0.26
LMX1B-201ENST00000355497 TTC36A6NLP5 189 aa16.69■□□□□ 0.26
LMX1B-201ENST00000355497 PLCG2P16885 1265 aa16.69■□□□□ 0.26
LMX1B-201ENST00000355497 GKAP1Q5VSY0 366 aaPredicted RBP16.69■□□□□ 0.26
LMX1B-201ENST00000355497 RUFY3Q7L099 469 aa16.69■□□□□ 0.26
LMX1B-201ENST00000355497 WDR70Q9NW82 654 aa16.69■□□□□ 0.26
LMX1B-201ENST00000355497 SPOPO43791 374 aa16.69■□□□□ 0.26
LMX1B-201ENST00000355497 KIFC2Q96AC6 838 aa16.69■□□□□ 0.26
LMX1B-201ENST00000355497 RALGAPBQ86X10 1494 aa16.69■□□□□ 0.26
LMX1B-201ENST00000355497 TUBB2AQ13885 445 aa16.69■□□□□ 0.26
LMX1B-201ENST00000355497 TUBB2BQ9BVA1 445 aa16.69■□□□□ 0.26
LMX1B-201ENST00000355497 UTP11Q9Y3A2 253 aaKnown RBP16.69■□□□□ 0.26
LMX1B-201ENST00000355497 PCK1P35558 622 aa16.68■□□□□ 0.26
LMX1B-201ENST00000355497 ERO1AQ96HE7 468 aa16.68■□□□□ 0.26
LMX1B-201ENST00000355497 NPHP3Q7Z494 1330 aa16.68■□□□□ 0.26
LMX1B-201ENST00000355497 A0A1B0GUA9 196 aa16.68■□□□□ 0.26
LMX1B-201ENST00000355497 ACTN4O43707 911 aaKnown RBP16.68■□□□□ 0.26
LMX1B-201ENST00000355497 TNFAIP3P21580 790 aa16.68■□□□□ 0.26
LMX1B-201ENST00000355497 CHST3Q7LGC8 479 aa16.68■□□□□ 0.26
LMX1B-201ENST00000355497 NLRP3Q96P20 1036 aa16.68■□□□□ 0.26
LMX1B-201ENST00000355497 ATL3Q6DD88 541 aa16.68■□□□□ 0.26
LMX1B-201ENST00000355497 C8orf74Q6P047 294 aa16.68■□□□□ 0.26
LMX1B-201ENST00000355497 SEPT14Q6ZU15 432 aa16.68■□□□□ 0.26
LMX1B-201ENST00000355497 COPS6Q7L5N1 327 aa16.68■□□□□ 0.26
LMX1B-201ENST00000355497 MRPL50Q8N5N7 158 aaKnown RBP16.68■□□□□ 0.26
LMX1B-201ENST00000355497 MCM9Q9NXL9 1143 aa16.68■□□□□ 0.26
LMX1B-201ENST00000355497 KSR2Q6VAB6 950 aa16.68■□□□□ 0.26
LMX1B-201ENST00000355497 MAGEB6Q8N7X4 407 aa16.68■□□□□ 0.26
LMX1B-201ENST00000355497 EPSTI1Q96J88 318 aa16.68■□□□□ 0.26
LMX1B-201ENST00000355497 STX10O60499 249 aa16.67■□□□□ 0.26
LMX1B-201ENST00000355497 CCT6AP40227 531 aaKnown RBP16.67■□□□□ 0.26
LMX1B-201ENST00000355497 ADGRF5Q8IZF2 1346 aa16.67■□□□□ 0.26
LMX1B-201ENST00000355497 ZNF526Q8TF50 670 aaPredicted RBP16.67■□□□□ 0.26
LMX1B-201ENST00000355497 IFT140Q96RY7 1462 aa16.67■□□□□ 0.26
LMX1B-201ENST00000355497 CYP26C1Q6V0L0 522 aa16.67■□□□□ 0.26
LMX1B-201ENST00000355497 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.67■□□□□ 0.26
LMX1B-201ENST00000355497 AFAP1L2Q8N4X5 818 aa16.67■□□□□ 0.26
LMX1B-201ENST00000355497 FAM160A1Q05DH4 1040 aa16.67■□□□□ 0.26
LMX1B-201ENST00000355497 FNBP1Q96RU3 617 aa16.67■□□□□ 0.26
LMX1B-201ENST00000355497 TTF2Q9UNY4 1162 aaKnown RBP16.67■□□□□ 0.26
LMX1B-201ENST00000355497 ABCC5O15440 1437 aa16.66■□□□□ 0.26
LMX1B-201ENST00000355497 TRAF5O00463 557 aa16.66■□□□□ 0.26
LMX1B-201ENST00000355497 ATP6V1AP38606 617 aa16.66■□□□□ 0.26
LMX1B-201ENST00000355497 PLCD1P51178 756 aa16.66■□□□□ 0.26
LMX1B-201ENST00000355497 DHX32Q7L7V1 743 aaKnown RBP16.66■□□□□ 0.26
LMX1B-201ENST00000355497 BUB1BO60566 1050 aaPredicted RBP16.66■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 92.5 ms