RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 HIBADHP31937 336 aaKnown RBP15.16■□□□□ 0.02
CLK3-201ENST00000345005 IMMTQ16891 758 aaKnown RBP15.16■□□□□ 0.02
CLK3-201ENST00000345005 ZSCAN23Q3MJ62 389 aa15.16■□□□□ 0.02
CLK3-201ENST00000345005 MTERF4Q7Z6M4 381 aaKnown RBP15.16■□□□□ 0.02
CLK3-201ENST00000345005 MAGEB6Q8N7X4 407 aa15.16■□□□□ 0.02
CLK3-201ENST00000345005 PDLIM2Q96JY6 352 aa15.16■□□□□ 0.02
CLK3-201ENST00000345005 KLRG2A4D1S0 409 aaPredicted RBP15.15■□□□□ 0.02
CLK3-201ENST00000345005 BBOX1O75936 387 aa15.15■□□□□ 0.02
CLK3-201ENST00000345005 HOXA10P31260 410 aaPredicted RBP15.15■□□□□ 0.02
CLK3-201ENST00000345005 SYAP1Q96A49 352 aaPredicted RBP15.15■□□□□ 0.02
CLK3-201ENST00000345005 AIDAQ96BJ3 306 aa15.15■□□□□ 0.02
CLK3-201ENST00000345005 CRAMP1Q96RY5 1269 aa15.15■□□□□ 0.02
CLK3-201ENST00000345005 ANKIB1Q9P2G1 1089 aa15.15■□□□□ 0.02
CLK3-201ENST00000345005 ZSCAN21Q9Y5A6 473 aaPredicted RBP15.15■□□□□ 0.02
CLK3-201ENST00000345005 PDS5AQ29RF7 1337 aaKnown RBP15.15■□□□□ 0.02
CLK3-201ENST00000345005 CHD4Q14839 1912 aa15.15■□□□□ 0.02
CLK3-201ENST00000345005 FGAP02671 866 aa15.15■□□□□ 0.02
CLK3-201ENST00000345005 SF3B2Q13435 895 aaKnown RBP15.15■□□□□ 0.02
CLK3-201ENST00000345005 IQSEC3Q9UPP2 1182 aaPredicted RBP15.15■□□□□ 0.02
CLK3-201ENST00000345005 XDHP47989 1333 aa15.15■□□□□ 0.02
CLK3-201ENST00000345005 QSER1Q2KHR3 1735 aa15.14■□□□□ 0.01
CLK3-201ENST00000345005 FOXP2O15409 715 aa15.14■□□□□ 0.01
CLK3-201ENST00000345005 STRBPQ96SI9 672 aaKnown RBP15.14■□□□□ 0.01
CLK3-201ENST00000345005 CCDC39Q9UFE4 941 aa15.14■□□□□ 0.01
CLK3-201ENST00000345005 E7EWF7 191 aa15.13■□□□□ 0.01
CLK3-201ENST00000345005 NCLP19338 710 aaKnown RBP15.13■□□□□ 0.01
CLK3-201ENST00000345005 ALX1Q15699 326 aa15.13■□□□□ 0.01
CLK3-201ENST00000345005 CAVIN1Q6NZI2 390 aaKnown RBP15.13■□□□□ 0.01
CLK3-201ENST00000345005 STOX1Q6ZVD7 989 aa15.13■□□□□ 0.01
CLK3-201ENST00000345005 DHX32Q7L7V1 743 aaKnown RBP15.13■□□□□ 0.01
CLK3-201ENST00000345005 TMC4Q7Z404 712 aa15.13■□□□□ 0.01
CLK3-201ENST00000345005 LARP6Q9BRS8 491 aaKnown RBP15.13■□□□□ 0.01
CLK3-201ENST00000345005 BRIP1Q9BX63 1249 aa15.13■□□□□ 0.01
CLK3-201ENST00000345005 PNPLA7Q6ZV29 1317 aa15.13■□□□□ 0.01
CLK3-201ENST00000345005 ZNF213O14771 459 aa15.13■□□□□ 0.01
CLK3-201ENST00000345005 GNAT2P19087 354 aa15.13■□□□□ 0.01
CLK3-201ENST00000345005 EN1Q05925 392 aaPredicted RBP15.13■□□□□ 0.01
CLK3-201ENST00000345005 TTLL5Q6EMB2 1281 aa15.13■□□□□ 0.01
CLK3-201ENST00000345005 LRSAM1Q6UWE0 723 aa15.13■□□□□ 0.01
CLK3-201ENST00000345005 PODXL2Q9NZ53 605 aa15.13■□□□□ 0.01
CLK3-201ENST00000345005 ABCF2Q9UG63 623 aa15.13■□□□□ 0.01
CLK3-201ENST00000345005 PARP3Q9Y6F1 533 aa15.13■□□□□ 0.01
CLK3-201ENST00000345005 PATL2C9JE40 543 aaKnown RBP15.12■□□□□ 0.01
CLK3-201ENST00000345005 APPP05067 770 aa15.12■□□□□ 0.01
CLK3-201ENST00000345005 TOB2Q14106 344 aaPredicted RBP15.12■□□□□ 0.01
CLK3-201ENST00000345005 ME3Q16798 604 aa15.12■□□□□ 0.01
CLK3-201ENST00000345005 TMED8Q6PL24 325 aaPredicted RBP15.12■□□□□ 0.01
CLK3-201ENST00000345005 C15orf52Q6ZUT6 534 aaKnown RBP15.12■□□□□ 0.01
CLK3-201ENST00000345005 RAI14Q9P0K7 980 aa15.12■□□□□ 0.01
CLK3-201ENST00000345005 TPCN1Q9ULQ1 816 aa15.12■□□□□ 0.01
CLK3-201ENST00000345005 CACNA1SQ13698 1873 aa15.12■□□□□ 0.01
CLK3-201ENST00000345005 COL1A1P02452 1464 aaPredicted RBP15.12■□□□□ 0.01
CLK3-201ENST00000345005 ZMYM6O95789 1325 aa15.11■□□□□ 0.01
CLK3-201ENST00000345005 IRS2Q9Y4H2 1338 aa15.11■□□□□ 0.01
CLK3-201ENST00000345005 CYP7A1P22680 504 aa15.11■□□□□ 0.01
CLK3-201ENST00000345005 ATP2B4P23634 1241 aa15.11■□□□□ 0.01
CLK3-201ENST00000345005 KLRK1P26718 216 aa15.11■□□□□ 0.01
CLK3-201ENST00000345005 BAG6P46379 1132 aa15.11■□□□□ 0.01
CLK3-201ENST00000345005 Q6ZUG5 572 aa15.11■□□□□ 0.01
CLK3-201ENST00000345005 TCEANC2Q96MN5 208 aa15.11■□□□□ 0.01
CLK3-201ENST00000345005 CAMKK2Q96RR4 588 aa15.11■□□□□ 0.01
CLK3-201ENST00000345005 SMC3Q9UQE7 1217 aa15.11■□□□□ 0.01
CLK3-201ENST00000345005 LRRC37AA6NMS7 1700 aa15.11■□□□□ 0.01
CLK3-201ENST00000345005 IGSF3O75054 1194 aa15.1■□□□□ 0.01
CLK3-201ENST00000345005 MBD4O95243 580 aa15.1■□□□□ 0.01
CLK3-201ENST00000345005 LARGE1O95461 756 aa15.1■□□□□ 0.01
CLK3-201ENST00000345005 FGD1P98174 961 aa15.1■□□□□ 0.01
CLK3-201ENST00000345005 EXOSC10Q01780 885 aaKnown RBP15.1■□□□□ 0.01
CLK3-201ENST00000345005 COL9A3Q14050 684 aaPredicted RBP15.1■□□□□ 0.01
CLK3-201ENST00000345005 CCDC83Q8IWF9 413 aa15.1■□□□□ 0.01
CLK3-201ENST00000345005 MAST2Q6P0Q8 1798 aa15.1■□□□□ 0.01
CLK3-201ENST00000345005 A0A0G2JLW4 131 aa15.1■□□□□ 0.01
CLK3-201ENST00000345005 PRPF40AO75400 957 aaKnown RBP15.1■□□□□ 0.01
CLK3-201ENST00000345005 MMP10P09238 476 aa15.1■□□□□ 0.01
CLK3-201ENST00000345005 PDE6BP35913 854 aa15.1■□□□□ 0.01
CLK3-201ENST00000345005 GPSM2P81274 684 aa15.1■□□□□ 0.01
CLK3-201ENST00000345005 ZNF804AQ7Z570 1209 aa15.1■□□□□ 0.01
CLK3-201ENST00000345005 KIAA1551Q9HCM1 1747 aa15.09■□□□□ 0.01
CLK3-201ENST00000345005 NPR1P16066 1061 aa15.09■□□□□ 0.01
CLK3-201ENST00000345005 HAND2P61296 217 aa15.09■□□□□ 0.01
CLK3-201ENST00000345005 EZH2Q15910 746 aaKnown RBP15.09■□□□□ 0.01
CLK3-201ENST00000345005 SLC15A2Q16348 729 aa15.09■□□□□ 0.01
CLK3-201ENST00000345005 SPTY2D1Q68D10 685 aaPredicted RBP15.09■□□□□ 0.01
CLK3-201ENST00000345005 TXNRD3Q86VQ6 643 aa15.09■□□□□ 0.01
CLK3-201ENST00000345005 NACAP1Q9BZK3 213 aa15.09■□□□□ 0.01
CLK3-201ENST00000345005 ARMT1Q9H993 441 aa15.09■□□□□ 0.01
CLK3-201ENST00000345005 STK32BQ9NY57 414 aa15.09■□□□□ 0.01
CLK3-201ENST00000345005 GGA1Q9UJY5 639 aa15.09■□□□□ 0.01
CLK3-201ENST00000345005 NSFL1CQ9UNZ2 370 aaKnown RBP15.09■□□□□ 0.01
CLK3-201ENST00000345005 ZKSCAN5Q9Y2L8 839 aa15.09■□□□□ 0.01
CLK3-201ENST00000345005 PKP1Q13835 747 aa15.08■□□□□ 0.01
CLK3-201ENST00000345005 NAA16Q6N069 864 aaPredicted RBP15.08■□□□□ 0.01
CLK3-201ENST00000345005 SP8Q8IXZ3 490 aa15.08■□□□□ 0.01
CLK3-201ENST00000345005 IFNL3Q8IZI9 196 aa15.08■□□□□ 0.01
CLK3-201ENST00000345005 FBXL16Q8N461 479 aa15.08■□□□□ 0.01
CLK3-201ENST00000345005 FAM184AQ8NB25 1140 aa15.08■□□□□ 0.01
CLK3-201ENST00000345005 NCOA7Q8NI08 942 aa15.08■□□□□ 0.01
CLK3-201ENST00000345005 AGXT2Q9BYV1 514 aa15.08■□□□□ 0.01
CLK3-201ENST00000345005 ZDHHC9Q9Y397 364 aa15.08■□□□□ 0.01
CLK3-201ENST00000345005 MAGEB6P1A0A0J9YX57 407 aa15.08■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 71.3 ms