RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 RBM41Q96IZ5 413 aaKnown RBP4.69□□□□□ -1.66
NEDD4-201ENST00000338963 PPP1R13BQ96KQ4 1090 aa4.69□□□□□ -1.66
NEDD4-201ENST00000338963 ZWILCHQ9H900 591 aa4.69□□□□□ -1.66
NEDD4-201ENST00000338963 DDX25Q9UHL0 483 aaKnown RBP4.69□□□□□ -1.66
NEDD4-201ENST00000338963 GOLGA8AA7E2F4 631 aa4.69□□□□□ -1.66
NEDD4-201ENST00000338963 ARHGAP6O43182 974 aa4.69□□□□□ -1.66
NEDD4-201ENST00000338963 RNF40O75150 1001 aa4.69□□□□□ -1.66
NEDD4-201ENST00000338963 BCAR3O75815 825 aa4.69□□□□□ -1.66
NEDD4-201ENST00000338963 TLDC1Q6P9B6 456 aa4.69□□□□□ -1.66
NEDD4-201ENST00000338963 C16orf87Q6PH81 154 aa4.69□□□□□ -1.66
NEDD4-201ENST00000338963 TBC1D9Q6ZT07 1266 aa4.69□□□□□ -1.66
NEDD4-201ENST00000338963 SRGAP1Q7Z6B7 1085 aa4.69□□□□□ -1.66
NEDD4-201ENST00000338963 ANKRD13BQ86YJ7 626 aa4.69□□□□□ -1.66
NEDD4-201ENST00000338963 SREK1Q8WXA9 508 aaKnown RBP4.69□□□□□ -1.66
NEDD4-201ENST00000338963 TRPC6Q9Y210 931 aa4.69□□□□□ -1.66
NEDD4-201ENST00000338963 EVC2Q86UK5 1308 aa4.69□□□□□ -1.66
NEDD4-201ENST00000338963 EVI5O60447 810 aa4.69□□□□□ -1.66
NEDD4-201ENST00000338963 SEC31AO94979 1220 aaKnown RBP4.69□□□□□ -1.66
NEDD4-201ENST00000338963 ALDH3A1P30838 453 aa4.69□□□□□ -1.66
NEDD4-201ENST00000338963 CCT5P48643 541 aa4.69□□□□□ -1.66
NEDD4-201ENST00000338963 BCAS4Q8TDM0 211 aa4.69□□□□□ -1.66
NEDD4-201ENST00000338963 PARD3BQ8TEW8 1205 aa4.69□□□□□ -1.66
NEDD4-201ENST00000338963 DHTKD1Q96HY7 919 aaPredicted RBP4.69□□□□□ -1.66
NEDD4-201ENST00000338963 LMCD1Q9NZU5 365 aa4.69□□□□□ -1.66
NEDD4-201ENST00000338963 ANKIB1Q9P2G1 1089 aa4.69□□□□□ -1.66
NEDD4-201ENST00000338963 CADPSQ9ULU8 1353 aa4.69□□□□□ -1.66
NEDD4-201ENST00000338963 PTPN23Q9H3S7 1636 aa4.69□□□□□ -1.66
NEDD4-201ENST00000338963 SSH2Q76I76 1423 aa4.68□□□□□ -1.66
NEDD4-201ENST00000338963 EIF3HO15372 352 aaKnown RBP eCLIP4.68□□□□□ -1.66
NEDD4-201ENST00000338963 SYT1P21579 422 aa4.68□□□□□ -1.66
NEDD4-201ENST00000338963 STIP1P31948 543 aaKnown RBP4.68□□□□□ -1.66
NEDD4-201ENST00000338963 INHBEP58166 350 aa4.68□□□□□ -1.66
NEDD4-201ENST00000338963 MAP3K9P80192 1104 aa4.68□□□□□ -1.66
NEDD4-201ENST00000338963 MXRA7P84157 204 aa4.68□□□□□ -1.66
NEDD4-201ENST00000338963 KCNV1Q6PIU1 500 aa4.68□□□□□ -1.66
NEDD4-201ENST00000338963 CWC27Q6UX04 472 aaKnown RBP4.68□□□□□ -1.66
NEDD4-201ENST00000338963 CTNNBL1Q8WYA6 563 aaPredicted RBP4.68□□□□□ -1.66
NEDD4-201ENST00000338963 RSPH1Q8WYR4 309 aa4.68□□□□□ -1.66
NEDD4-201ENST00000338963 CUL5Q93034 780 aa4.68□□□□□ -1.66
NEDD4-201ENST00000338963 FUCA2Q9BTY2 467 aa4.68□□□□□ -1.66
NEDD4-201ENST00000338963 CARD6Q9BX69 1037 aa4.68□□□□□ -1.66
NEDD4-201ENST00000338963 BICC1Q9H694 974 aaKnown RBP4.68□□□□□ -1.66
NEDD4-201ENST00000338963 MRFAP1Q9Y605 127 aa4.68□□□□□ -1.66
NEDD4-201ENST00000338963 MROH2BQ7Z745 1585 aa4.68□□□□□ -1.66
NEDD4-201ENST00000338963 POLR3AO14802 1390 aaPredicted RBP4.68□□□□□ -1.66
NEDD4-201ENST00000338963 F13A1P00488 732 aa4.68□□□□□ -1.66
NEDD4-201ENST00000338963 FNTAP49354 379 aa4.68□□□□□ -1.66
NEDD4-201ENST00000338963 SEPT7Q16181 437 aaKnown RBP4.68□□□□□ -1.66
NEDD4-201ENST00000338963 VPS53Q5VIR6 699 aa4.68□□□□□ -1.66
NEDD4-201ENST00000338963 RSRC2Q7L4I2 434 aaKnown RBP4.68□□□□□ -1.66
NEDD4-201ENST00000338963 CCDC13Q8IYE1 715 aa4.68□□□□□ -1.66
NEDD4-201ENST00000338963 CACTINQ8WUQ7 758 aaKnown RBP4.68□□□□□ -1.66
NEDD4-201ENST00000338963 XAGE2Q96GT9 111 aa4.68□□□□□ -1.66
NEDD4-201ENST00000338963 RBM17Q96I25 401 aaKnown RBP4.68□□□□□ -1.66
NEDD4-201ENST00000338963 SH2B1Q9NRF2 756 aaPredicted RBP4.68□□□□□ -1.66
NEDD4-201ENST00000338963 EXOC6BQ9Y2D4 811 aa4.68□□□□□ -1.66
NEDD4-201ENST00000338963 SPECC1Q5M775 1068 aa4.68□□□□□ -1.66
NEDD4-201ENST00000338963 CATIPQ7Z7H3 387 aa4.68□□□□□ -1.66
NEDD4-201ENST00000338963 EHBP1Q8NDI1 1231 aa4.68□□□□□ -1.66
NEDD4-201ENST00000338963 MYO1AQ9UBC5 1043 aa4.68□□□□□ -1.66
NEDD4-201ENST00000338963 LUC7L2Q9Y383 392 aaKnown RBP4.68□□□□□ -1.66
NEDD4-201ENST00000338963 CYTH3O43739 400 aa4.68□□□□□ -1.66
NEDD4-201ENST00000338963 TRPC1P48995 793 aa4.68□□□□□ -1.66
NEDD4-201ENST00000338963 ARPC4P59998 168 aa4.68□□□□□ -1.66
NEDD4-201ENST00000338963 EIF2AQ9BY44 585 aaKnown RBP4.68□□□□□ -1.66
NEDD4-201ENST00000338963 PCDHB15Q9Y5E8 787 aa4.68□□□□□ -1.66
NEDD4-201ENST00000338963 CASKIN1Q8WXD9 1431 aa4.68□□□□□ -1.66
NEDD4-201ENST00000338963 SNAPC4Q5SXM2 1469 aa4.68□□□□□ -1.66
NEDD4-201ENST00000338963 IQCJ-SCHIP1C9J366 451 aaPredicted RBP4.68□□□□□ -1.66
NEDD4-201ENST00000338963 ZNF189O75820 626 aaPredicted RBP4.68□□□□□ -1.66
NEDD4-201ENST00000338963 GNGT1P63211 74 aa4.68□□□□□ -1.66
NEDD4-201ENST00000338963 NAA30Q147X3 362 aaPredicted RBP4.68□□□□□ -1.66
NEDD4-201ENST00000338963 CNGA3Q16281 694 aa4.68□□□□□ -1.66
NEDD4-201ENST00000338963 IFI16Q16666 785 aaKnown RBP4.68□□□□□ -1.66
NEDD4-201ENST00000338963 CMPK2Q5EBM0 449 aa4.68□□□□□ -1.66
NEDD4-201ENST00000338963 FBXW10Q5XX13 1052 aa4.68□□□□□ -1.66
NEDD4-201ENST00000338963 KAT2BQ92831 832 aa4.68□□□□□ -1.66
NEDD4-201ENST00000338963 FAM192AQ9GZU8 254 aa4.68□□□□□ -1.66
NEDD4-201ENST00000338963 PFDN1O60925 122 aa4.68□□□□□ -1.66
NEDD4-201ENST00000338963 CCND1P24385 295 aa4.68□□□□□ -1.66
NEDD4-201ENST00000338963 PPP2R1AP30153 589 aa4.68□□□□□ -1.66
NEDD4-201ENST00000338963 STIM1Q13586 685 aa4.68□□□□□ -1.66
NEDD4-201ENST00000338963 BLMHQ13867 455 aa4.68□□□□□ -1.66
NEDD4-201ENST00000338963 MIS18BP1Q6P0N0 1132 aa4.68□□□□□ -1.66
NEDD4-201ENST00000338963 USP26Q9BXU7 913 aa4.68□□□□□ -1.66
NEDD4-201ENST00000338963 CBX8Q9HC52 389 aa4.68□□□□□ -1.66
NEDD4-201ENST00000338963 DMAP1Q9NPF5 467 aaPredicted RBP4.68□□□□□ -1.66
NEDD4-201ENST00000338963 ECEL1O95672 775 aa4.67□□□□□ -1.66
NEDD4-201ENST00000338963 PARP1P09874 1014 aaKnown RBP4.67□□□□□ -1.66
NEDD4-201ENST00000338963 RAB15P59190 212 aa4.67□□□□□ -1.66
NEDD4-201ENST00000338963 PDE1BQ01064 536 aa4.67□□□□□ -1.66
NEDD4-201ENST00000338963 EIF2B5Q13144 721 aaKnown RBP4.67□□□□□ -1.66
NEDD4-201ENST00000338963 PABPC4Q13310 644 aaKnown RBP eCLIP4.67□□□□□ -1.66
NEDD4-201ENST00000338963 KCNB1Q14721 858 aa4.67□□□□□ -1.66
NEDD4-201ENST00000338963 PHLDB2Q86SQ0 1253 aa4.67□□□□□ -1.66
NEDD4-201ENST00000338963 IFT74Q96LB3 600 aa4.67□□□□□ -1.66
NEDD4-201ENST00000338963 YIPF3Q9GZM5 350 aa4.67□□□□□ -1.66
NEDD4-201ENST00000338963 SLC40A1Q9NP59 571 aa4.67□□□□□ -1.66
NEDD4-201ENST00000338963 IKBKGQ9Y6K9 419 aa4.67□□□□□ -1.66
NEDD4-201ENST00000338963 ATP6V1G1O75348 118 aa4.67□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms