RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 NPR1P16066 1061 aa7.93□□□□□ -1.14
SF3B1-201ENST00000335508 ZNF76P36508 570 aa7.93□□□□□ -1.14
SF3B1-201ENST00000335508 DLGAP5Q15398 846 aa7.93□□□□□ -1.14
SF3B1-201ENST00000335508 MPHOSPH10O00566 681 aaKnown RBP7.93□□□□□ -1.14
SF3B1-201ENST00000335508 NAP1L4Q99733 375 aaKnown RBP7.93□□□□□ -1.14
SF3B1-201ENST00000335508 CCDC39Q9UFE4 941 aa7.93□□□□□ -1.14
SF3B1-201ENST00000335508 ZSCAN22P10073 491 aaPredicted RBP7.92□□□□□ -1.14
SF3B1-201ENST00000335508 UBE2HP62256 183 aa7.92□□□□□ -1.14
SF3B1-201ENST00000335508 MCTP2Q6DN12 878 aa7.92□□□□□ -1.14
SF3B1-201ENST00000335508 CNTNAP4Q9C0A0 1308 aa7.92□□□□□ -1.14
SF3B1-201ENST00000335508 RFX7Q2KHR2 1363 aa7.92□□□□□ -1.14
SF3B1-201ENST00000335508 LMOD1P29536 600 aaPredicted RBP7.92□□□□□ -1.14
SF3B1-201ENST00000335508 GIMAP6Q6P9H5 292 aa7.92□□□□□ -1.14
SF3B1-201ENST00000335508 CCDC82Q8N4S0 544 aa7.92□□□□□ -1.14
SF3B1-201ENST00000335508 MPHOSPH6Q99547 160 aaKnown RBP7.92□□□□□ -1.14
SF3B1-201ENST00000335508 TRIM5Q9C035 493 aa7.92□□□□□ -1.14
SF3B1-201ENST00000335508 C6orf50Q9HD87 102 aa7.92□□□□□ -1.14
SF3B1-201ENST00000335508 ANO10Q9NW15 660 aa7.92□□□□□ -1.14
SF3B1-201ENST00000335508 PPIP5K2O43314 1243 aa7.92□□□□□ -1.14
SF3B1-201ENST00000335508 FNBP4Q8N3X1 1017 aaPredicted RBP7.92□□□□□ -1.14
SF3B1-201ENST00000335508 TCEANC2Q96MN5 208 aa7.92□□□□□ -1.14
SF3B1-201ENST00000335508 BAG4O95429 457 aaKnown RBP7.92□□□□□ -1.14
SF3B1-201ENST00000335508 ZMYM1Q5SVZ6 1142 aa7.92□□□□□ -1.14
SF3B1-201ENST00000335508 C2CD5Q86YS7 1000 aa7.92□□□□□ -1.14
SF3B1-201ENST00000335508 SIRT2Q8IXJ6 389 aa7.92□□□□□ -1.14
SF3B1-201ENST00000335508 TAF5LO75529 589 aa7.92□□□□□ -1.14
SF3B1-201ENST00000335508 CCT2P78371 535 aaKnown RBP7.92□□□□□ -1.14
SF3B1-201ENST00000335508 ALG1Q9BT22 464 aa7.92□□□□□ -1.14
SF3B1-201ENST00000335508 RBM28Q9NW13 759 aaKnown RBP7.92□□□□□ -1.14
SF3B1-201ENST00000335508 AMPD3Q01432 767 aa7.91□□□□□ -1.14
SF3B1-201ENST00000335508 TTLL5Q6EMB2 1281 aa7.91□□□□□ -1.14
SF3B1-201ENST00000335508 RUFY3Q7L099 469 aa7.91□□□□□ -1.14
SF3B1-201ENST00000335508 CREBRFQ8IUR6 639 aa7.91□□□□□ -1.14
SF3B1-201ENST00000335508 MIGA1Q8NAN2 632 aa7.91□□□□□ -1.14
SF3B1-201ENST00000335508 ERMNQ8TAM6 284 aa7.91□□□□□ -1.14
SF3B1-201ENST00000335508 COL15A1P39059 1388 aa7.91□□□□□ -1.14
SF3B1-201ENST00000335508 LRRC7Q96NW7 1537 aa7.91□□□□□ -1.14
SF3B1-201ENST00000335508 SMTNL1A8MU46 457 aa7.91□□□□□ -1.14
SF3B1-201ENST00000335508 SASH1O94885 1247 aa7.91□□□□□ -1.14
SF3B1-201ENST00000335508 GJB2P29033 226 aa7.91□□□□□ -1.14
SF3B1-201ENST00000335508 SPAG1Q07617 926 aa7.91□□□□□ -1.14
SF3B1-201ENST00000335508 CCDC125Q86Z20 511 aa7.91□□□□□ -1.14
SF3B1-201ENST00000335508 ZNF532Q9HCE3 1301 aa7.91□□□□□ -1.14
SF3B1-201ENST00000335508 AK2P54819 239 aa7.91□□□□□ -1.14
SF3B1-201ENST00000335508 LRRC24Q50LG9 513 aa7.91□□□□□ -1.14
SF3B1-201ENST00000335508 DCAF15Q66K64 600 aa7.91□□□□□ -1.14
SF3B1-201ENST00000335508 TSPY26PQ9H489 355 aa7.91□□□□□ -1.14
SF3B1-201ENST00000335508 PPP1R12BO60237 982 aaPredicted RBP7.91□□□□□ -1.14
SF3B1-201ENST00000335508 FOSBP53539 338 aa7.91□□□□□ -1.14
SF3B1-201ENST00000335508 CCDC93Q567U6 631 aa7.91□□□□□ -1.14
SF3B1-201ENST00000335508 TNPO1Q92973 898 aaKnown RBP7.91□□□□□ -1.14
SF3B1-201ENST00000335508 COA1Q9GZY4 146 aa7.91□□□□□ -1.14
SF3B1-201ENST00000335508 PRAMEF22A3QJZ6 481 aa7.91□□□□□ -1.14
SF3B1-201ENST00000335508 H7C1D1 291 aa7.91□□□□□ -1.14
SF3B1-201ENST00000335508 ZNF34Q8IZ26 560 aa7.91□□□□□ -1.14
SF3B1-201ENST00000335508 TXLNBQ8N3L3 684 aa7.91□□□□□ -1.14
SF3B1-201ENST00000335508 ZNF274Q96GC6 653 aaPredicted RBP7.91□□□□□ -1.14
SF3B1-201ENST00000335508 SLC26A6Q9BXS9 759 aa7.91□□□□□ -1.14
SF3B1-201ENST00000335508 SYT1P21579 422 aa7.9□□□□□ -1.14
SF3B1-201ENST00000335508 PHKA1P46020 1223 aa7.9□□□□□ -1.14
SF3B1-201ENST00000335508 RTKN2Q8IZC4 609 aa7.9□□□□□ -1.14
SF3B1-201ENST00000335508 TTLL6Q8N841 843 aa7.9□□□□□ -1.14
SF3B1-201ENST00000335508 CARMIL3Q8ND23 1372 aa7.9□□□□□ -1.14
SF3B1-201ENST00000335508 USP17L12C9JPN9 530 aa7.9□□□□□ -1.14
SF3B1-201ENST00000335508 USP17L21D6R901 530 aa7.9□□□□□ -1.14
SF3B1-201ENST00000335508 CEBPZQ03701 1054 aaKnown RBP7.9□□□□□ -1.14
SF3B1-201ENST00000335508 SUSD4Q5VX71 490 aa7.9□□□□□ -1.14
SF3B1-201ENST00000335508 Q6ZUG5 572 aa7.9□□□□□ -1.14
SF3B1-201ENST00000335508 MASTLQ96GX5 879 aa7.9□□□□□ -1.14
SF3B1-201ENST00000335508 RICTORQ6R327 1708 aa7.9□□□□□ -1.14
SF3B1-201ENST00000335508 DEXIO95424 95 aa7.9□□□□□ -1.14
SF3B1-201ENST00000335508 DPY19L2Q6NUT2 758 aa7.9□□□□□ -1.14
SF3B1-201ENST00000335508 CBFA2T2O43439 604 aa7.9□□□□□ -1.15
SF3B1-201ENST00000335508 GTF2IP78347 998 aa7.9□□□□□ -1.15
SF3B1-201ENST00000335508 FAM227BQ96M60 508 aa7.9□□□□□ -1.15
SF3B1-201ENST00000335508 DHX36Q9H2U1 1008 aaKnown RBP7.9□□□□□ -1.15
SF3B1-201ENST00000335508 TTF2Q9UNY4 1162 aaKnown RBP7.9□□□□□ -1.15
SF3B1-201ENST00000335508 RPS6KB1P23443 525 aa7.9□□□□□ -1.15
SF3B1-201ENST00000335508 CCDC183Q5T5S1 534 aa7.9□□□□□ -1.15
SF3B1-201ENST00000335508 USP48Q86UV5 1035 aa7.9□□□□□ -1.15
SF3B1-201ENST00000335508 STK11IPQ8N1F8 1099 aa7.9□□□□□ -1.15
SF3B1-201ENST00000335508 PRDM10Q9NQV6 1147 aa7.9□□□□□ -1.15
SF3B1-201ENST00000335508 BCORL1Q5H9F3 1711 aa7.89□□□□□ -1.15
SF3B1-201ENST00000335508 HSPD1P10809 573 aaKnown RBP7.89□□□□□ -1.15
SF3B1-201ENST00000335508 RNF214Q8ND24 703 aa7.89□□□□□ -1.15
SF3B1-201ENST00000335508 ZNHIT6Q9NWK9 470 aaKnown RBP7.89□□□□□ -1.15
SF3B1-201ENST00000335508 PTPDC1A2A3K4 754 aa7.89□□□□□ -1.15
SF3B1-201ENST00000335508 FGFR1OPO95684 399 aaKnown RBP7.89□□□□□ -1.15
SF3B1-201ENST00000335508 HSP90AA2PQ14568 343 aaPredicted RBP7.89□□□□□ -1.15
SF3B1-201ENST00000335508 STXBP4Q6ZWJ1 553 aa7.89□□□□□ -1.15
SF3B1-201ENST00000335508 VEZTQ9HBM0 779 aa7.89□□□□□ -1.15
SF3B1-201ENST00000335508 MAGEC2Q9UBF1 373 aaPredicted RBP7.89□□□□□ -1.15
SF3B1-201ENST00000335508 MYO3BQ8WXR4 1341 aa7.89□□□□□ -1.15
SF3B1-201ENST00000335508 ADCY9O60503 1353 aa7.89□□□□□ -1.15
SF3B1-201ENST00000335508 F8W031 263 aaPredicted RBP7.89□□□□□ -1.15
SF3B1-201ENST00000335508 SLC27A2O14975 620 aa7.89□□□□□ -1.15
SF3B1-201ENST00000335508 CCP110O43303 1012 aa7.89□□□□□ -1.15
SF3B1-201ENST00000335508 KCNQ2O43526 872 aa7.89□□□□□ -1.15
SF3B1-201ENST00000335508 SSBP05455 408 aaKnown RBP eCLIP7.89□□□□□ -1.15
SF3B1-201ENST00000335508 LIFRP42702 1097 aa7.89□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 139.7 ms