RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 GNAT2P19087 354 aa17.85■□□□□ 0.45
CCDC88C-202ENST00000334448 CHAF1AQ13111 956 aaPredicted RBP17.85■□□□□ 0.45
CCDC88C-202ENST00000334448 VPS53Q5VIR6 699 aa17.85■□□□□ 0.45
CCDC88C-202ENST00000334448 RASEFQ8IZ41 740 aa17.85■□□□□ 0.45
CCDC88C-202ENST00000334448 RAI14Q9P0K7 980 aa17.85■□□□□ 0.45
CCDC88C-202ENST00000334448 BRCA1P38398 1863 aaKnown RBP17.84■□□□□ 0.45
CCDC88C-202ENST00000334448 CYP7A1P22680 504 aa17.84■□□□□ 0.45
CCDC88C-202ENST00000334448 PRDX5P30044 214 aa17.84■□□□□ 0.45
CCDC88C-202ENST00000334448 FKBP1AP62942 108 aaKnown RBP17.84■□□□□ 0.45
CCDC88C-202ENST00000334448 MECOMQ03112 1051 aa17.84■□□□□ 0.45
CCDC88C-202ENST00000334448 KRT32Q14532 448 aa17.84■□□□□ 0.45
CCDC88C-202ENST00000334448 NAA16Q6N069 864 aaPredicted RBP17.84■□□□□ 0.45
CCDC88C-202ENST00000334448 AIDAQ96BJ3 306 aa17.84■□□□□ 0.45
CCDC88C-202ENST00000334448 RIOK1Q9BRS2 568 aaKnown RBP17.84■□□□□ 0.45
CCDC88C-202ENST00000334448 TBC1D2Q9BYX2 928 aa17.84■□□□□ 0.45
CCDC88C-202ENST00000334448 CTNNA3Q9UI47 895 aa17.84■□□□□ 0.45
CCDC88C-202ENST00000334448 MYO5AQ9Y4I1 1855 aaKnown RBP17.84■□□□□ 0.45
CCDC88C-202ENST00000334448 C21orf2O43822 256 aa17.83■□□□□ 0.44
CCDC88C-202ENST00000334448 GSTO1P78417 241 aa17.83■□□□□ 0.44
CCDC88C-202ENST00000334448 ILDR2Q71H61 639 aa17.83■□□□□ 0.44
CCDC88C-202ENST00000334448 CERS3Q8IU89 383 aa17.83■□□□□ 0.44
CCDC88C-202ENST00000334448 MBD4O95243 580 aa17.82■□□□□ 0.44
CCDC88C-202ENST00000334448 LDHBP07195 334 aaKnown RBP17.82■□□□□ 0.44
CCDC88C-202ENST00000334448 DALRD3Q5D0E6 543 aaKnown RBP17.82■□□□□ 0.44
CCDC88C-202ENST00000334448 ADGRA1Q86SQ6 560 aa17.82■□□□□ 0.44
CCDC88C-202ENST00000334448 FAM163AQ96GL9 167 aaPredicted RBP17.82■□□□□ 0.44
CCDC88C-202ENST00000334448 SPON1Q9HCB6 807 aa17.82■□□□□ 0.44
CCDC88C-202ENST00000334448 ST18O60284 1047 aa17.81■□□□□ 0.44
CCDC88C-202ENST00000334448 CYP21A2P08686 494 aa17.81■□□□□ 0.44
CCDC88C-202ENST00000334448 MCM2P49736 904 aa17.81■□□□□ 0.44
CCDC88C-202ENST00000334448 GIMAP6Q6P9H5 292 aa17.81■□□□□ 0.44
CCDC88C-202ENST00000334448 DZIP1Q86YF9 867 aaKnown RBP17.81■□□□□ 0.44
CCDC88C-202ENST00000334448 ZSWIM6Q9HCJ5 1215 aa17.81■□□□□ 0.44
CCDC88C-202ENST00000334448 GAKO14976 1311 aa17.8■□□□□ 0.44
CCDC88C-202ENST00000334448 LTBP3Q9NS15 1303 aa17.8■□□□□ 0.44
CCDC88C-202ENST00000334448 MAGEB6P1A0A0J9YX57 407 aa17.8■□□□□ 0.44
CCDC88C-202ENST00000334448 PATL2C9JE40 543 aaKnown RBP17.8■□□□□ 0.44
CCDC88C-202ENST00000334448 RIMBP2O15034 1052 aa17.8■□□□□ 0.44
CCDC88C-202ENST00000334448 PSMA5P28066 241 aa17.8■□□□□ 0.44
CCDC88C-202ENST00000334448 PPP4CP60510 307 aa17.8■□□□□ 0.44
CCDC88C-202ENST00000334448 MFSD14BQ5SR56 506 aa17.8■□□□□ 0.44
CCDC88C-202ENST00000334448 STRIP1Q5VSL9 837 aa17.8■□□□□ 0.44
CCDC88C-202ENST00000334448 HSCBQ8IWL3 235 aa17.8■□□□□ 0.44
CCDC88C-202ENST00000334448 LCORLQ8N3X6 602 aa17.8■□□□□ 0.44
CCDC88C-202ENST00000334448 TTC14Q96N46 770 aa17.8■□□□□ 0.44
CCDC88C-202ENST00000334448 GSG1L2A8MUP6 293 aa17.79■□□□□ 0.44
CCDC88C-202ENST00000334448 FGAP02671 866 aa17.79■□□□□ 0.44
CCDC88C-202ENST00000334448 LDHCP07864 332 aa17.79■□□□□ 0.44
CCDC88C-202ENST00000334448 SLF2Q8IX21 1173 aa17.79■□□□□ 0.44
CCDC88C-202ENST00000334448 ALDH8A1Q9H2A2 487 aaPredicted RBP17.79■□□□□ 0.44
CCDC88C-202ENST00000334448 ARMT1Q9H993 441 aa17.79■□□□□ 0.44
CCDC88C-202ENST00000334448 EPB41L4AQ9HCS5 686 aaPredicted RBP17.79■□□□□ 0.44
CCDC88C-202ENST00000334448 MROH7-TTC4A0A0A0MT08 1334 aa17.78■□□□□ 0.44
CCDC88C-202ENST00000334448 ECE2O60344 883 aa17.78■□□□□ 0.44
CCDC88C-202ENST00000334448 CD2BP2O95400 341 aaKnown RBP17.78■□□□□ 0.44
CCDC88C-202ENST00000334448 GTF2IP78347 998 aa17.78■□□□□ 0.44
CCDC88C-202ENST00000334448 GRIK5Q16478 980 aa17.78■□□□□ 0.44
CCDC88C-202ENST00000334448 MRIQ9BWK5 157 aa17.78■□□□□ 0.44
CCDC88C-202ENST00000334448 ZNF646O15015 1829 aaPredicted RBP17.77■□□□□ 0.44
CCDC88C-202ENST00000334448 K7ELQ4 463 aaPredicted RBP17.77■□□□□ 0.44
CCDC88C-202ENST00000334448 HMGB1P09429 215 aaKnown RBP17.77■□□□□ 0.44
CCDC88C-202ENST00000334448 NEK4P51957 841 aa17.77■□□□□ 0.44
CCDC88C-202ENST00000334448 IMMTQ16891 758 aaKnown RBP17.77■□□□□ 0.44
CCDC88C-202ENST00000334448 DOK7Q18PE1 504 aa17.77■□□□□ 0.44
CCDC88C-202ENST00000334448 ADCK5Q3MIX3 580 aa17.77■□□□□ 0.44
CCDC88C-202ENST00000334448 DACT2Q5SW24 774 aa17.77■□□□□ 0.44
CCDC88C-202ENST00000334448 TTLL5Q6EMB2 1281 aa17.77■□□□□ 0.44
CCDC88C-202ENST00000334448 IFNL3Q8IZI9 196 aa17.77■□□□□ 0.44
CCDC88C-202ENST00000334448 CERS5Q8N5B7 392 aa17.77■□□□□ 0.44
CCDC88C-202ENST00000334448 MIGA1Q8NAN2 632 aa17.77■□□□□ 0.44
CCDC88C-202ENST00000334448 JAKMIP1Q96N16 626 aaKnown RBP17.77■□□□□ 0.44
CCDC88C-202ENST00000334448 NACAP1Q9BZK3 213 aa17.77■□□□□ 0.44
CCDC88C-202ENST00000334448 ZNF219Q9P2Y4 722 aaPredicted RBP17.77■□□□□ 0.44
CCDC88C-202ENST00000334448 JAG2Q9Y219 1238 aa17.77■□□□□ 0.44
CCDC88C-202ENST00000334448 TAF6LQ9Y6J9 622 aa17.77■□□□□ 0.44
CCDC88C-202ENST00000334448 TIAM2Q8IVF5 1701 aa17.77■□□□□ 0.44
CCDC88C-202ENST00000334448 CCDC88AQ3V6T2 1871 aa17.76■□□□□ 0.43
CCDC88C-202ENST00000334448 GPR75-ASB3A0A0A6YYF3 556 aa17.76■□□□□ 0.43
CCDC88C-202ENST00000334448 PPIP5K2O43314 1243 aa17.76■□□□□ 0.43
CCDC88C-202ENST00000334448 AOC3Q16853 763 aa17.76■□□□□ 0.43
CCDC88C-202ENST00000334448 RUFY3Q7L099 469 aa17.76■□□□□ 0.43
CCDC88C-202ENST00000334448 CYP46A1Q9Y6A2 500 aa17.76■□□□□ 0.43
CCDC88C-202ENST00000334448 LAMA4Q16363 1823 aa17.76■□□□□ 0.43
CCDC88C-202ENST00000334448 CHD4Q14839 1912 aa17.76■□□□□ 0.43
CCDC88C-202ENST00000334448 USP17L3A6NCW0 530 aa17.75■□□□□ 0.43
CCDC88C-202ENST00000334448 USP17L4A6NCW7 530 aa17.75■□□□□ 0.43
CCDC88C-202ENST00000334448 G3V3G9 751 aa17.75■□□□□ 0.43
CCDC88C-202ENST00000334448 CASTP20810 708 aaKnown RBP17.75■□□□□ 0.43
CCDC88C-202ENST00000334448 HDLBPQ00341 1268 aaKnown RBP17.75■□□□□ 0.43
CCDC88C-202ENST00000334448 DCAF8Q5TAQ9 597 aa17.75■□□□□ 0.43
CCDC88C-202ENST00000334448 STOX1Q6ZVD7 989 aa17.75■□□□□ 0.43
CCDC88C-202ENST00000334448 USP17L1Q7RTZ2 530 aa17.75■□□□□ 0.43
CCDC88C-202ENST00000334448 FBXL16Q8N461 479 aa17.75■□□□□ 0.43
CCDC88C-202ENST00000334448 UPF3BQ9BZI7 483 aaKnown RBP17.75■□□□□ 0.43
CCDC88C-202ENST00000334448 CRNKL1Q9BZJ0 848 aaKnown RBP17.75■□□□□ 0.43
CCDC88C-202ENST00000334448 DBNDD1Q9H9R9 158 aa17.75■□□□□ 0.43
CCDC88C-202ENST00000334448 ATP8A2Q9NTI2 1148 aa17.75■□□□□ 0.43
CCDC88C-202ENST00000334448 DAXXQ9UER7 740 aaPredicted RBP17.75■□□□□ 0.43
CCDC88C-202ENST00000334448 SLC4A4Q9Y6R1 1079 aa17.75■□□□□ 0.43
CCDC88C-202ENST00000334448 FER1L6Q2WGJ9 1857 aa17.74■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms