RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 TEKT1Q969V4 418 aa17.21■□□□□ 0.35
LIMS1-201ENST00000332345 KIF1BPQ96EK5 621 aa17.21■□□□□ 0.35
LIMS1-201ENST00000332345 PDS5AQ29RF7 1337 aaKnown RBP17.21■□□□□ 0.34
LIMS1-201ENST00000332345 SALL1Q9NSC2 1324 aa17.21■□□□□ 0.34
LIMS1-201ENST00000332345 ADM5C9JUS6 153 aa17.2■□□□□ 0.34
LIMS1-201ENST00000332345 ARID4AP29374 1257 aaPredicted RBP17.2■□□□□ 0.34
LIMS1-201ENST00000332345 RASGRF1Q13972 1273 aa17.2■□□□□ 0.34
LIMS1-201ENST00000332345 GRIK5Q16478 980 aa17.2■□□□□ 0.34
LIMS1-201ENST00000332345 TTC39AQ5SRH9 613 aa17.2■□□□□ 0.34
LIMS1-201ENST00000332345 SPTY2D1Q68D10 685 aaPredicted RBP17.2■□□□□ 0.34
LIMS1-201ENST00000332345 CLASRPQ8N2M8 674 aaKnown RBP17.2■□□□□ 0.34
LIMS1-201ENST00000332345 CRBNQ96SW2 442 aa17.2■□□□□ 0.34
LIMS1-201ENST00000332345 CCDC8Q9H0W5 538 aaPredicted RBP17.2■□□□□ 0.34
LIMS1-201ENST00000332345 ZNF408Q9H9D4 720 aa17.2■□□□□ 0.34
LIMS1-201ENST00000332345 ABT1Q9ULW3 272 aaKnown RBP17.2■□□□□ 0.34
LIMS1-201ENST00000332345 APBB1O00213 710 aa17.19■□□□□ 0.34
LIMS1-201ENST00000332345 AAMPQ13685 434 aa17.19■□□□□ 0.34
LIMS1-201ENST00000332345 HHIPL2Q6UWX4 724 aa17.19■□□□□ 0.34
LIMS1-201ENST00000332345 SPATA5Q8NB90 893 aa17.19■□□□□ 0.34
LIMS1-201ENST00000332345 EAF2Q96CJ1 260 aaPredicted RBP17.19■□□□□ 0.34
LIMS1-201ENST00000332345 DBNDD2Q9BQY9 259 aa17.19■□□□□ 0.34
LIMS1-201ENST00000332345 ABCF2Q9UG63 623 aa17.19■□□□□ 0.34
LIMS1-201ENST00000332345 SUPT16HQ9Y5B9 1047 aaKnown RBP17.19■□□□□ 0.34
LIMS1-201ENST00000332345 DEFB115Q30KQ5 88 aa17.18■□□□□ 0.34
LIMS1-201ENST00000332345 AACSQ86V21 672 aa17.18■□□□□ 0.34
LIMS1-201ENST00000332345 C2orf69Q8N8R5 385 aa17.18■□□□□ 0.34
LIMS1-201ENST00000332345 KLRG1Q96E93 195 aa17.18■□□□□ 0.34
LIMS1-201ENST00000332345 ZNF512BQ96KM6 892 aaPredicted RBP17.18■□□□□ 0.34
LIMS1-201ENST00000332345 ZDHHC15Q96MV8 337 aa17.18■□□□□ 0.34
LIMS1-201ENST00000332345 HMG20BQ9P0W2 317 aa17.18■□□□□ 0.34
LIMS1-201ENST00000332345 PCDHAC2Q9Y5I4 1007 aa17.18■□□□□ 0.34
LIMS1-201ENST00000332345 DLK2Q6UY11 383 aa17.17■□□□□ 0.34
LIMS1-201ENST00000332345 SLF2Q8IX21 1173 aa17.17■□□□□ 0.34
LIMS1-201ENST00000332345 CDCA5Q96FF9 252 aa17.17■□□□□ 0.34
LIMS1-201ENST00000332345 TDRD3Q9H7E2 651 aaKnown RBP17.17■□□□□ 0.34
LIMS1-201ENST00000332345 IL1RAPL2Q9NP60 686 aa17.17■□□□□ 0.34
LIMS1-201ENST00000332345 DBNLQ9UJU6 430 aaKnown RBP17.17■□□□□ 0.34
LIMS1-201ENST00000332345 CLRN2A0PK11 232 aa17.16■□□□□ 0.34
LIMS1-201ENST00000332345 IFIT2P09913 472 aaKnown RBP17.16■□□□□ 0.34
LIMS1-201ENST00000332345 PRDX5P30044 214 aa17.16■□□□□ 0.34
LIMS1-201ENST00000332345 NF2P35240 595 aa17.16■□□□□ 0.34
LIMS1-201ENST00000332345 MCAMP43121 646 aa17.16■□□□□ 0.34
LIMS1-201ENST00000332345 TNFAIP1Q13829 316 aa17.16■□□□□ 0.34
LIMS1-201ENST00000332345 ERICH6Q7L0X2 663 aa17.16■□□□□ 0.34
LIMS1-201ENST00000332345 DEFB129Q9H1M3 183 aa17.16■□□□□ 0.34
LIMS1-201ENST00000332345 DCTPP1Q9H773 170 aa17.16■□□□□ 0.34
LIMS1-201ENST00000332345 VEZTQ9HBM0 779 aa17.16■□□□□ 0.34
LIMS1-201ENST00000332345 ZNF70Q9UC06 446 aaPredicted RBP17.16■□□□□ 0.34
LIMS1-201ENST00000332345 MKRN1Q9UHC7 482 aaKnown RBP17.16■□□□□ 0.34
LIMS1-201ENST00000332345 SCAF8Q9UPN6 1271 aaKnown RBP17.16■□□□□ 0.34
LIMS1-201ENST00000332345 PCDHB15Q9Y5E8 787 aa17.16■□□□□ 0.34
LIMS1-201ENST00000332345 PPP2R3BQ9Y5P8 575 aa17.16■□□□□ 0.34
LIMS1-201ENST00000332345 TLL2Q9Y6L7 1015 aa17.16■□□□□ 0.34
LIMS1-201ENST00000332345 COL1A1P02452 1464 aaPredicted RBP17.16■□□□□ 0.34
LIMS1-201ENST00000332345 ECM29Q5VYK3 1845 aa17.16■□□□□ 0.34
LIMS1-201ENST00000332345 RASSF10A6NK89 507 aa17.15■□□□□ 0.34
LIMS1-201ENST00000332345 SPDYE2Q495Y8 402 aa17.15■□□□□ 0.34
LIMS1-201ENST00000332345 SAPCD2Q86UD0 394 aa17.15■□□□□ 0.34
LIMS1-201ENST00000332345 DZIP1Q86YF9 867 aaKnown RBP17.15■□□□□ 0.34
LIMS1-201ENST00000332345 LRRCC1Q9C099 1032 aa17.15■□□□□ 0.34
LIMS1-201ENST00000332345 GBA2Q9HCG7 927 aaPredicted RBP17.15■□□□□ 0.34
LIMS1-201ENST00000332345 TNNI2P48788 182 aa17.14■□□□□ 0.33
LIMS1-201ENST00000332345 FKBP1BP68106 108 aa17.14■□□□□ 0.33
LIMS1-201ENST00000332345 PRAMEF18Q5VWM3 479 aa17.14■□□□□ 0.33
LIMS1-201ENST00000332345 APOBEC3HQ6NTF7 200 aaKnown RBP17.14■□□□□ 0.33
LIMS1-201ENST00000332345 BCL11AQ9H165 835 aa17.14■□□□□ 0.33
LIMS1-201ENST00000332345 TLR7Q9NYK1 1049 aaKnown RBP17.14■□□□□ 0.33
LIMS1-201ENST00000332345 TMOD2Q9NZR1 351 aa17.14■□□□□ 0.33
LIMS1-201ENST00000332345 LRP2BPQ9P2M1 347 aa17.14■□□□□ 0.33
LIMS1-201ENST00000332345 CNTNAP1P78357 1384 aa17.14■□□□□ 0.33
LIMS1-201ENST00000332345 LDHCP07864 332 aa17.13■□□□□ 0.33
LIMS1-201ENST00000332345 GSTO1P78417 241 aa17.13■□□□□ 0.33
LIMS1-201ENST00000332345 SUPT20HL1Q3ZLR7 823 aa17.13■□□□□ 0.33
LIMS1-201ENST00000332345 PI16Q6UXB8 463 aa17.13■□□□□ 0.33
LIMS1-201ENST00000332345 TBC1D9Q6ZT07 1266 aa17.13■□□□□ 0.33
LIMS1-201ENST00000332345 HHIPL1Q96JK4 782 aa17.13■□□□□ 0.33
LIMS1-201ENST00000332345 SNRKQ9NRH2 765 aa17.13■□□□□ 0.33
LIMS1-201ENST00000332345 MYH2Q9UKX2 1941 aa17.12■□□□□ 0.33
LIMS1-201ENST00000332345 IGSF3O75054 1194 aa17.12■□□□□ 0.33
LIMS1-201ENST00000332345 ECE1P42892 770 aa17.12■□□□□ 0.33
LIMS1-201ENST00000332345 HUNKP57058 714 aa17.12■□□□□ 0.33
LIMS1-201ENST00000332345 RASA3Q14644 834 aa17.12■□□□□ 0.33
LIMS1-201ENST00000332345 DIXDC1Q155Q3 683 aa17.12■□□□□ 0.33
LIMS1-201ENST00000332345 FKBP1CQ5VVH2 108 aa17.12■□□□□ 0.33
LIMS1-201ENST00000332345 PAXIP1Q6ZW49 1069 aaPredicted RBP17.12■□□□□ 0.33
LIMS1-201ENST00000332345 FAM163AQ96GL9 167 aaPredicted RBP17.12■□□□□ 0.33
LIMS1-201ENST00000332345 RAI14Q9P0K7 980 aa17.12■□□□□ 0.33
LIMS1-201ENST00000332345 DAGLAQ9Y4D2 1042 aa17.12■□□□□ 0.33
LIMS1-201ENST00000332345 TCP10L2B9ZVM9 353 aa17.11■□□□□ 0.33
LIMS1-201ENST00000332345 ZAP70P43403 619 aa17.11■□□□□ 0.33
LIMS1-201ENST00000332345 VEGFBP49765 207 aa17.11■□□□□ 0.33
LIMS1-201ENST00000332345 MECOMQ03112 1051 aa17.11■□□□□ 0.33
LIMS1-201ENST00000332345 AOX1Q06278 1338 aa17.11■□□□□ 0.33
LIMS1-201ENST00000332345 AKAP11Q9UKA4 1901 aa17.11■□□□□ 0.33
LIMS1-201ENST00000332345 CYP2E1P05181 493 aaPredicted RBP17.1■□□□□ 0.33
LIMS1-201ENST00000332345 TTLL12Q14166 644 aaPredicted RBP17.1■□□□□ 0.33
LIMS1-201ENST00000332345 ARMC9Q7Z3E5 817 aa17.1■□□□□ 0.33
LIMS1-201ENST00000332345 JMYQ8N9B5 988 aa17.1■□□□□ 0.33
LIMS1-201ENST00000332345 NSUN4Q96CB9 384 aaKnown RBP17.1■□□□□ 0.33
LIMS1-201ENST00000332345 USP40Q9NVE5 1235 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms