RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 SEMA3EO15041 775 aa21.89■■□□□ 1.1
USP39-201ENST00000323701 PRDX5P30044 214 aa21.89■■□□□ 1.1
USP39-201ENST00000323701 EXOSC10Q01780 885 aaKnown RBP21.89■■□□□ 1.1
USP39-201ENST00000323701 CTNNA3Q9UI47 895 aa21.89■■□□□ 1.1
USP39-201ENST00000323701 GSG1L2A8MUP6 293 aa21.89■■□□□ 1.09
USP39-201ENST00000323701 IMMTQ16891 758 aaKnown RBP21.89■■□□□ 1.09
USP39-201ENST00000323701 STK32BQ9NY57 414 aa21.89■■□□□ 1.09
USP39-201ENST00000323701 MCM4P33991 863 aa21.88■■□□□ 1.09
USP39-201ENST00000323701 DHX32Q7L7V1 743 aaKnown RBP21.88■■□□□ 1.09
USP39-201ENST00000323701 TBC1D10CQ8IV04 446 aa21.88■■□□□ 1.09
USP39-201ENST00000323701 PPEF1O14829 653 aaPredicted RBP21.88■■□□□ 1.09
USP39-201ENST00000323701 TBC1D16Q8TBP0 767 aa21.88■■□□□ 1.09
USP39-201ENST00000323701 NSUN4Q96CB9 384 aaKnown RBP21.88■■□□□ 1.09
USP39-201ENST00000323701 CHAMP1Q96JM3 812 aa21.88■■□□□ 1.09
USP39-201ENST00000323701 INCENPQ9NQS7 918 aa21.88■■□□□ 1.09
USP39-201ENST00000323701 GPHNQ9NQX3 736 aaPredicted RBP21.88■■□□□ 1.09
USP39-201ENST00000323701 LTBP1Q14766 1721 aa21.87■■□□□ 1.09
USP39-201ENST00000323701 PATL2C9JE40 543 aaKnown RBP21.87■■□□□ 1.09
USP39-201ENST00000323701 MECOMQ03112 1051 aa21.87■■□□□ 1.09
USP39-201ENST00000323701 GRIK5Q16478 980 aa21.87■■□□□ 1.09
USP39-201ENST00000323701 FOXD4L5Q5VV16 416 aaPredicted RBP21.87■■□□□ 1.09
USP39-201ENST00000323701 IFNL3Q8IZI9 196 aa21.87■■□□□ 1.09
USP39-201ENST00000323701 TDRD7Q8NHU6 1098 aaKnown RBP21.87■■□□□ 1.09
USP39-201ENST00000323701 FOXD4L4Q8WXT5 416 aaPredicted RBP21.87■■□□□ 1.09
USP39-201ENST00000323701 GGA1Q9UJY5 639 aa21.87■■□□□ 1.09
USP39-201ENST00000323701 TACC3Q9Y6A5 838 aa21.87■■□□□ 1.09
USP39-201ENST00000323701 PDS5AQ29RF7 1337 aaKnown RBP21.87■■□□□ 1.09
USP39-201ENST00000323701 LRRC37AA6NMS7 1700 aa21.87■■□□□ 1.09
USP39-201ENST00000323701 ZNF213O14771 459 aa21.87■■□□□ 1.09
USP39-201ENST00000323701 DYNLL1P63167 89 aaKnown RBP21.87■■□□□ 1.09
USP39-201ENST00000323701 BRF1Q92994 677 aa21.87■■□□□ 1.09
USP39-201ENST00000323701 RIOK1Q9BRS2 568 aaKnown RBP21.87■■□□□ 1.09
USP39-201ENST00000323701 PODXL2Q9NZ53 605 aa21.87■■□□□ 1.09
USP39-201ENST00000323701 NPR1P16066 1061 aa21.86■■□□□ 1.09
USP39-201ENST00000323701 STK3Q13188 491 aa21.86■■□□□ 1.09
USP39-201ENST00000323701 C15orf52Q6ZUT6 534 aaKnown RBP21.86■■□□□ 1.09
USP39-201ENST00000323701 ZSCAN31Q96LW9 406 aaPredicted RBP21.86■■□□□ 1.09
USP39-201ENST00000323701 SH2B1Q9NRF2 756 aaPredicted RBP21.86■■□□□ 1.09
USP39-201ENST00000323701 ATP6V0A2Q9Y487 856 aa21.85■■□□□ 1.09
USP39-201ENST00000323701 SLC4A4Q9Y6R1 1079 aa21.85■■□□□ 1.09
USP39-201ENST00000323701 SMIM22K7EJ46 135 aa21.85■■□□□ 1.09
USP39-201ENST00000323701 ATP2B4P23634 1241 aa21.85■■□□□ 1.09
USP39-201ENST00000323701 PDE6BP35913 854 aa21.85■■□□□ 1.09
USP39-201ENST00000323701 NUCB2P80303 420 aa21.85■■□□□ 1.09
USP39-201ENST00000323701 NAA16Q6N069 864 aaPredicted RBP21.85■■□□□ 1.09
USP39-201ENST00000323701 SP8Q8IXZ3 490 aa21.85■■□□□ 1.09
USP39-201ENST00000323701 SDR42E1Q8WUS8 393 aa21.85■■□□□ 1.09
USP39-201ENST00000323701 HMGB1P09429 215 aaKnown RBP21.84■■□□□ 1.09
USP39-201ENST00000323701 ANKRD1Q15327 319 aa21.84■■□□□ 1.09
USP39-201ENST00000323701 ALX1Q15699 326 aa21.84■■□□□ 1.09
USP39-201ENST00000323701 MB21D2Q8IYB1 491 aaPredicted RBP21.84■■□□□ 1.09
USP39-201ENST00000323701 BAG6P46379 1132 aa21.84■■□□□ 1.09
USP39-201ENST00000323701 ANTXR2P58335 489 aa21.84■■□□□ 1.09
USP39-201ENST00000323701 CD209Q9NNX6 404 aa21.84■■□□□ 1.09
USP39-201ENST00000323701 MAGEB6P1A0A0J9YX57 407 aa21.83■■□□□ 1.09
USP39-201ENST00000323701 APOBRQ0VD83 1088 aa21.83■■□□□ 1.09
USP39-201ENST00000323701 ZNF804AQ7Z570 1209 aa21.83■■□□□ 1.09
USP39-201ENST00000323701 AGXT2Q9BYV1 514 aa21.83■■□□□ 1.09
USP39-201ENST00000323701 C6orf229H3BNL8 230 aa21.82■■□□□ 1.08
USP39-201ENST00000323701 CHRNA5P30532 468 aa21.82■■□□□ 1.08
USP39-201ENST00000323701 CTDSPL2Q05D32 466 aa21.82■■□□□ 1.08
USP39-201ENST00000323701 MASTLQ96GX5 879 aa21.82■■□□□ 1.08
USP39-201ENST00000323701 NAPBQ9H115 298 aa21.82■■□□□ 1.08
USP39-201ENST00000323701 DUOX1Q9NRD9 1551 aa21.82■■□□□ 1.08
USP39-201ENST00000323701 SF3B2Q13435 895 aaKnown RBP21.82■■□□□ 1.08
USP39-201ENST00000323701 ZNF622Q969S3 477 aaKnown RBP eCLIP21.82■■□□□ 1.08
USP39-201ENST00000323701 NEDD4P46934 1319 aa21.81■■□□□ 1.08
USP39-201ENST00000323701 BRD1O95696 1058 aa21.81■■□□□ 1.08
USP39-201ENST00000323701 C2CD5Q86YS7 1000 aa21.81■■□□□ 1.08
USP39-201ENST00000323701 ZBTB22O15209 634 aa21.81■■□□□ 1.08
USP39-201ENST00000323701 BAG4O95429 457 aaKnown RBP21.81■■□□□ 1.08
USP39-201ENST00000323701 GJB2P29033 226 aa21.81■■□□□ 1.08
USP39-201ENST00000323701 SMC3Q9UQE7 1217 aa21.81■■□□□ 1.08
USP39-201ENST00000323701 ZSCAN21Q9Y5A6 473 aaPredicted RBP21.81■■□□□ 1.08
USP39-201ENST00000323701 QSER1Q2KHR3 1735 aa21.8■■□□□ 1.08
USP39-201ENST00000323701 ZMYM6O95789 1325 aa21.8■■□□□ 1.08
USP39-201ENST00000323701 RIMBP2O15034 1052 aa21.8■■□□□ 1.08
USP39-201ENST00000323701 IL1R1P14778 569 aa21.8■■□□□ 1.08
USP39-201ENST00000323701 CYB5R4Q7L1T6 521 aa21.8■■□□□ 1.08
USP39-201ENST00000323701 AATFQ9NY61 560 aaKnown RBP eCLIP21.8■■□□□ 1.08
USP39-201ENST00000323701 PRC1O43663 620 aa21.8■■□□□ 1.08
USP39-201ENST00000323701 ALDH1B1P30837 517 aa21.8■■□□□ 1.08
USP39-201ENST00000323701 FGD1P98174 961 aa21.8■■□□□ 1.08
USP39-201ENST00000323701 CLEC17AQ6ZS10 378 aa21.8■■□□□ 1.08
USP39-201ENST00000323701 STK11IPQ8N1F8 1099 aa21.8■■□□□ 1.08
USP39-201ENST00000323701 NCOA7Q8NI08 942 aa21.8■■□□□ 1.08
USP39-201ENST00000323701 CHD4Q14839 1912 aa21.79■■□□□ 1.08
USP39-201ENST00000323701 SALL1Q9NSC2 1324 aa21.79■■□□□ 1.08
USP39-201ENST00000323701 GNAT2P19087 354 aa21.79■■□□□ 1.08
USP39-201ENST00000323701 TDO2P48775 406 aa21.79■■□□□ 1.08
USP39-201ENST00000323701 EVX2Q03828 476 aa21.79■■□□□ 1.08
USP39-201ENST00000323701 DIXDC1Q155Q3 683 aa21.79■■□□□ 1.08
USP39-201ENST00000323701 TMC4Q7Z404 712 aa21.79■■□□□ 1.08
USP39-201ENST00000323701 GTF3C6Q969F1 213 aa21.79■■□□□ 1.08
USP39-201ENST00000323701 B4E1Z4 1266 aa21.78■■□□□ 1.08
USP39-201ENST00000323701 SYT1P21579 422 aa21.78■■□□□ 1.08
USP39-201ENST00000323701 SCRN1Q12765 414 aa21.78■■□□□ 1.08
USP39-201ENST00000323701 CYP2D7A0A087X1C5 515 aa21.78■■□□□ 1.08
USP39-201ENST00000323701 WDR66Q8TBY9 1149 aa21.78■■□□□ 1.08
USP39-201ENST00000323701 SLX4Q8IY92 1834 aa21.78■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms