RNA–Protein interactions for RNA: ENST00000318007.9

PDLIM5-202, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 1,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-202ENST00000318007 NSUN4Q96CB9 384 aaKnown RBP18.57■□□□□ 0.56
PDLIM5-202ENST00000318007 TTF2Q9UNY4 1162 aaKnown RBP18.57■□□□□ 0.56
PDLIM5-202ENST00000318007 DOCK2Q92608 1830 aa18.57■□□□□ 0.56
PDLIM5-202ENST00000318007 FAM205AQ6ZU69 1335 aa18.57■□□□□ 0.56
PDLIM5-202ENST00000318007 ZNF541Q9H0D2 1346 aa18.57■□□□□ 0.56
PDLIM5-202ENST00000318007 C9orf131Q5VYM1 1079 aa18.57■□□□□ 0.56
PDLIM5-202ENST00000318007 ZGPATQ8N5A5 531 aaKnown RBP18.57■□□□□ 0.56
PDLIM5-202ENST00000318007 PCDHAC2Q9Y5I4 1007 aa18.57■□□□□ 0.56
PDLIM5-202ENST00000318007 PDS5AQ29RF7 1337 aaKnown RBP18.56■□□□□ 0.56
PDLIM5-202ENST00000318007 MYH7P12883 1935 aa18.56■□□□□ 0.56
PDLIM5-202ENST00000318007 PIAS4Q8N2W9 510 aaPredicted RBP18.56■□□□□ 0.56
PDLIM5-202ENST00000318007 TBC1D22AQ8WUA7 517 aa18.56■□□□□ 0.56
PDLIM5-202ENST00000318007 ESYT1Q9BSJ8 1104 aa18.56■□□□□ 0.56
PDLIM5-202ENST00000318007 BACH2Q9BYV9 841 aa18.56■□□□□ 0.56
PDLIM5-202ENST00000318007 ANO2Q9NQ90 1003 aa18.56■□□□□ 0.56
PDLIM5-202ENST00000318007 MAST3O60307 1309 aa18.56■□□□□ 0.56
PDLIM5-202ENST00000318007 AATFQ9NY61 560 aaKnown RBP eCLIP18.55■□□□□ 0.56
PDLIM5-202ENST00000318007 ADAMTSL1Q8N6G6 1762 aa18.55■□□□□ 0.56
PDLIM5-202ENST00000318007 SALL1Q9NSC2 1324 aa18.55■□□□□ 0.56
PDLIM5-202ENST00000318007 TCRBV5S4A2TA0A5A2 114 aa18.55■□□□□ 0.56
PDLIM5-202ENST00000318007 SHTN1A0MZ66 631 aa18.55■□□□□ 0.56
PDLIM5-202ENST00000318007 RBM5P52756 815 aaKnown RBP eCLIP18.55■□□□□ 0.56
PDLIM5-202ENST00000318007 DYNLL1P63167 89 aaKnown RBP18.55■□□□□ 0.56
PDLIM5-202ENST00000318007 SPTY2D1Q68D10 685 aaPredicted RBP18.55■□□□□ 0.56
PDLIM5-202ENST00000318007 CIAPIN1Q6FI81 312 aa18.55■□□□□ 0.56
PDLIM5-202ENST00000318007 VPS33BQ9H267 617 aa18.55■□□□□ 0.56
PDLIM5-202ENST00000318007 SBF1O95248 1867 aa18.54■□□□□ 0.56
PDLIM5-202ENST00000318007 EIF6P56537 245 aaKnown RBP18.54■□□□□ 0.56
PDLIM5-202ENST00000318007 ZSCAN25Q6NSZ9 544 aa18.54■□□□□ 0.56
PDLIM5-202ENST00000318007 ARMT1Q9H993 441 aa18.54■□□□□ 0.56
PDLIM5-202ENST00000318007 HIP1O00291 1037 aa18.53■□□□□ 0.56
PDLIM5-202ENST00000318007 MBD4O95243 580 aa18.53■□□□□ 0.56
PDLIM5-202ENST00000318007 ZMYM1Q5SVZ6 1142 aa18.53■□□□□ 0.56
PDLIM5-202ENST00000318007 VPS53Q5VIR6 699 aa18.53■□□□□ 0.56
PDLIM5-202ENST00000318007 RSBN1LQ6PCB5 846 aaPredicted RBP18.53■□□□□ 0.56
PDLIM5-202ENST00000318007 APPBP2Q92624 585 aa18.53■□□□□ 0.56
PDLIM5-202ENST00000318007 AIDAQ96BJ3 306 aa18.53■□□□□ 0.56
PDLIM5-202ENST00000318007 SGSM2O43147 1006 aa18.53■□□□□ 0.56
PDLIM5-202ENST00000318007 LRRFIP1Q32MZ4 808 aaKnown RBP18.53■□□□□ 0.56
PDLIM5-202ENST00000318007 MCMDC2Q4G0Z9 681 aa18.53■□□□□ 0.56
PDLIM5-202ENST00000318007 LCORLQ8N3X6 602 aa18.53■□□□□ 0.56
PDLIM5-202ENST00000318007 ZNF646O15015 1829 aaPredicted RBP18.53■□□□□ 0.56
PDLIM5-202ENST00000318007 FZD9O00144 591 aa18.52■□□□□ 0.56
PDLIM5-202ENST00000318007 GPAA1O43292 621 aa18.52■□□□□ 0.56
PDLIM5-202ENST00000318007 GRIN3BO60391 1043 aa18.52■□□□□ 0.56
PDLIM5-202ENST00000318007 ZFYP08048 801 aaPredicted RBP18.52■□□□□ 0.56
PDLIM5-202ENST00000318007 TIAM2Q8IVF5 1701 aa18.52■□□□□ 0.56
PDLIM5-202ENST00000318007 UBE3CQ15386 1083 aa18.51■□□□□ 0.55
PDLIM5-202ENST00000318007 SLC4A8Q2Y0W8 1093 aa18.51■□□□□ 0.55
PDLIM5-202ENST00000318007 RUFY2Q8WXA3 655 aa18.51■□□□□ 0.55
PDLIM5-202ENST00000318007 VIL1P09327 827 aaKnown RBP18.51■□□□□ 0.55
PDLIM5-202ENST00000318007 MYH2Q9UKX2 1941 aa18.51■□□□□ 0.55
PDLIM5-202ENST00000318007 RFX7Q2KHR2 1363 aa18.5■□□□□ 0.55
PDLIM5-202ENST00000318007 MAGEB6P1A0A0J9YX57 407 aa18.5■□□□□ 0.55
PDLIM5-202ENST00000318007 PRKAB2O43741 272 aa18.5■□□□□ 0.55
PDLIM5-202ENST00000318007 DDNO94850 711 aaPredicted RBP18.5■□□□□ 0.55
PDLIM5-202ENST00000318007 APPP05067 770 aa18.5■□□□□ 0.55
PDLIM5-202ENST00000318007 PTH1RQ03431 593 aa18.5■□□□□ 0.55
PDLIM5-202ENST00000318007 RBM26Q5T8P6 1007 aaKnown RBP18.5■□□□□ 0.55
PDLIM5-202ENST00000318007 SDR42E1Q8WUS8 393 aa18.5■□□□□ 0.55
PDLIM5-202ENST00000318007 CCDC171Q6TFL3 1326 aa18.5■□□□□ 0.55
PDLIM5-202ENST00000318007 MAST2Q6P0Q8 1798 aa18.5■□□□□ 0.55
PDLIM5-202ENST00000318007 BTDP43251 543 aa18.5■□□□□ 0.55
PDLIM5-202ENST00000318007 GMPSP49915 693 aaPredicted RBP18.5■□□□□ 0.55
PDLIM5-202ENST00000318007 HELLSQ9NRZ9 838 aa18.5■□□□□ 0.55
PDLIM5-202ENST00000318007 MROH7-TTC4A0A0A0MT08 1334 aa18.49■□□□□ 0.55
PDLIM5-202ENST00000318007 CRKP46108 304 aa18.49■□□□□ 0.55
PDLIM5-202ENST00000318007 TNIP1Q15025 636 aa18.49■□□□□ 0.55
PDLIM5-202ENST00000318007 KIAA1211Q6ZU35 1233 aa18.49■□□□□ 0.55
PDLIM5-202ENST00000318007 DAGLAQ9Y4D2 1042 aa18.49■□□□□ 0.55
PDLIM5-202ENST00000318007 PSME4Q14997 1843 aa18.49■□□□□ 0.55
PDLIM5-202ENST00000318007 CACNB3P54284 484 aa18.48■□□□□ 0.55
PDLIM5-202ENST00000318007 OGFOD1Q8N543 542 aa18.48■□□□□ 0.55
PDLIM5-202ENST00000318007 TEKT1Q969V4 418 aa18.48■□□□□ 0.55
PDLIM5-202ENST00000318007 SCAF8Q9UPN6 1271 aaKnown RBP18.48■□□□□ 0.55
PDLIM5-202ENST00000318007 EGFRP00533 1210 aa18.48■□□□□ 0.55
PDLIM5-202ENST00000318007 GSTO1P78417 241 aa18.48■□□□□ 0.55
PDLIM5-202ENST00000318007 SH3RF3Q8TEJ3 882 aaPredicted RBP18.48■□□□□ 0.55
PDLIM5-202ENST00000318007 DICER1Q9UPY3 1922 aaKnown RBP18.48■□□□□ 0.55
PDLIM5-202ENST00000318007 USP17L8P0C7I0 530 aa18.47■□□□□ 0.55
PDLIM5-202ENST00000318007 STK11IPQ8N1F8 1099 aa18.47■□□□□ 0.55
PDLIM5-202ENST00000318007 RIOK1Q9BRS2 568 aaKnown RBP18.47■□□□□ 0.55
PDLIM5-202ENST00000318007 NOL10Q9BSC4 688 aaKnown RBP18.47■□□□□ 0.55
PDLIM5-202ENST00000318007 SLC4A4Q9Y6R1 1079 aa18.47■□□□□ 0.55
PDLIM5-202ENST00000318007 CFAP100Q494V2 611 aa18.46■□□□□ 0.55
PDLIM5-202ENST00000318007 SAMD7Q7Z3H4 446 aa18.46■□□□□ 0.55
PDLIM5-202ENST00000318007 MICALL2Q8IY33 904 aa18.46■□□□□ 0.55
PDLIM5-202ENST00000318007 REC8O95072 547 aa18.46■□□□□ 0.55
PDLIM5-202ENST00000318007 HSPD1P10809 573 aaKnown RBP18.46■□□□□ 0.55
PDLIM5-202ENST00000318007 PICALMQ13492 652 aa18.46■□□□□ 0.55
PDLIM5-202ENST00000318007 STRBPQ96SI9 672 aaKnown RBP18.46■□□□□ 0.55
PDLIM5-202ENST00000318007 GMLQ99445 158 aa18.46■□□□□ 0.55
PDLIM5-202ENST00000318007 LSG1Q9H089 658 aaKnown RBP18.46■□□□□ 0.55
PDLIM5-202ENST00000318007 MYO3BQ8WXR4 1341 aa18.46■□□□□ 0.55
PDLIM5-202ENST00000318007 RAD50Q92878 1312 aa18.46■□□□□ 0.55
PDLIM5-202ENST00000318007 FOXP2O15409 715 aa18.45■□□□□ 0.54
PDLIM5-202ENST00000318007 TBC1D10BQ4KMP7 808 aaPredicted RBP18.45■□□□□ 0.54
PDLIM5-202ENST00000318007 SUGT1Q9Y2Z0 365 aa18.45■□□□□ 0.54
PDLIM5-202ENST00000318007 CLRN2A0PK11 232 aa18.44■□□□□ 0.54
PDLIM5-202ENST00000318007 DCAF8L1A6NGE4 600 aa18.44■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms