RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 NBPF7P0C2Y1 421 aaPredicted RBP8.55□□□□□ -1.04
LIMCH1-201ENST00000313860 PASD1Q8IV76 773 aa8.55□□□□□ -1.04
LIMCH1-201ENST00000313860 KCTD17Q8N5Z5 321 aa8.55□□□□□ -1.04
LIMCH1-201ENST00000313860 ARFGAP2Q8N6H7 521 aa8.55□□□□□ -1.04
LIMCH1-201ENST00000313860 NDEL1Q9GZM8 345 aa8.55□□□□□ -1.04
LIMCH1-201ENST00000313860 HELLSQ9NRZ9 838 aa8.55□□□□□ -1.04
LIMCH1-201ENST00000313860 EEA1Q15075 1411 aa8.55□□□□□ -1.04
LIMCH1-201ENST00000313860 PPFIA4O75335 1185 aa8.55□□□□□ -1.04
LIMCH1-201ENST00000313860 PYGLP06737 847 aa8.55□□□□□ -1.04
LIMCH1-201ENST00000313860 XRCC6P12956 609 aaKnown RBP eCLIP8.55□□□□□ -1.04
LIMCH1-201ENST00000313860 SERPINB6P35237 376 aa8.55□□□□□ -1.04
LIMCH1-201ENST00000313860 MTIF2P46199 727 aaKnown RBP8.55□□□□□ -1.04
LIMCH1-201ENST00000313860 WAPLQ7Z5K2 1190 aa8.55□□□□□ -1.04
LIMCH1-201ENST00000313860 ZSCAN30Q86W11 494 aa8.55□□□□□ -1.04
LIMCH1-201ENST00000313860 DACH2Q96NX9 599 aa8.55□□□□□ -1.04
LIMCH1-201ENST00000313860 RHBDL2Q9NX52 303 aa8.55□□□□□ -1.04
LIMCH1-201ENST00000313860 BZW2Q9Y6E2 419 aaKnown RBP8.55□□□□□ -1.04
LIMCH1-201ENST00000313860 SMAPO00193 183 aa8.54□□□□□ -1.04
LIMCH1-201ENST00000313860 TSC22D2O75157 780 aa8.54□□□□□ -1.04
LIMCH1-201ENST00000313860 OCM2P0CE71 109 aa8.54□□□□□ -1.04
LIMCH1-201ENST00000313860 OCMP0CE72 109 aaPredicted RBP8.54□□□□□ -1.04
LIMCH1-201ENST00000313860 PPP2R5DQ14738 602 aa8.54□□□□□ -1.04
LIMCH1-201ENST00000313860 CTCFLQ8NI51 663 aaPredicted RBP8.54□□□□□ -1.04
LIMCH1-201ENST00000313860 KIFAP3Q92845 792 aa8.54□□□□□ -1.04
LIMCH1-201ENST00000313860 NUP62CLQ9H1M0 184 aa8.54□□□□□ -1.04
LIMCH1-201ENST00000313860 C11orf95C9JLR9 678 aaPredicted RBP8.54□□□□□ -1.04
LIMCH1-201ENST00000313860 DAB1O75553 588 aa8.54□□□□□ -1.04
LIMCH1-201ENST00000313860 NRG3P56975 720 aa8.54□□□□□ -1.04
LIMCH1-201ENST00000313860 SKAP1Q86WV1 359 aa8.54□□□□□ -1.04
LIMCH1-201ENST00000313860 SDCCAG3Q96C92 435 aa8.54□□□□□ -1.04
LIMCH1-201ENST00000313860 PDCD10Q9BUL8 212 aa8.54□□□□□ -1.04
LIMCH1-201ENST00000313860 STOML2Q9UJZ1 356 aa8.54□□□□□ -1.04
LIMCH1-201ENST00000313860 GOLGA8BA8MQT2 603 aa8.54□□□□□ -1.04
LIMCH1-201ENST00000313860 ELL2O00472 640 aaPredicted RBP8.54□□□□□ -1.04
LIMCH1-201ENST00000313860 LVRNQ6Q4G3 990 aa8.54□□□□□ -1.04
LIMCH1-201ENST00000313860 SMCR8Q8TEV9 937 aaPredicted RBP8.54□□□□□ -1.04
LIMCH1-201ENST00000313860 NEUROD6Q96NK8 337 aa8.54□□□□□ -1.04
LIMCH1-201ENST00000313860 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.54□□□□□ -1.04
LIMCH1-201ENST00000313860 FAN1Q9Y2M0 1017 aa8.54□□□□□ -1.04
LIMCH1-201ENST00000313860 CAB39Q9Y376 341 aaPredicted RBP8.54□□□□□ -1.04
LIMCH1-201ENST00000313860 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP8.54□□□□□ -1.04
LIMCH1-201ENST00000313860 MOCS3O95396 460 aa8.54□□□□□ -1.04
LIMCH1-201ENST00000313860 CDC37Q16543 378 aaPredicted RBP8.54□□□□□ -1.04
LIMCH1-201ENST00000313860 TRMT1LQ7Z2T5 733 aaKnown RBP8.54□□□□□ -1.04
LIMCH1-201ENST00000313860 UBE3BQ7Z3V4 1068 aa8.54□□□□□ -1.04
LIMCH1-201ENST00000313860 KSR1Q8IVT5 923 aa8.54□□□□□ -1.04
LIMCH1-201ENST00000313860 SMAP1Q8IYB5 467 aaPredicted RBP8.54□□□□□ -1.04
LIMCH1-201ENST00000313860 PPHLN1Q8NEY8 458 aaKnown RBP8.54□□□□□ -1.04
LIMCH1-201ENST00000313860 FAM76AQ8TAV0 307 aa8.54□□□□□ -1.04
LIMCH1-201ENST00000313860 GTF3C6Q969F1 213 aa8.54□□□□□ -1.04
LIMCH1-201ENST00000313860 CRBNQ96SW2 442 aa8.54□□□□□ -1.04
LIMCH1-201ENST00000313860 PPANQ9NQ55 473 aaKnown RBP8.54□□□□□ -1.04
LIMCH1-201ENST00000313860 SNW1Q13573 536 aaKnown RBP8.54□□□□□ -1.04
LIMCH1-201ENST00000313860 CLUL1Q15846 466 aa8.54□□□□□ -1.04
LIMCH1-201ENST00000313860 JADE1Q6IE81 842 aa8.54□□□□□ -1.04
LIMCH1-201ENST00000313860 CFAP36Q96G28 342 aa8.54□□□□□ -1.04
LIMCH1-201ENST00000313860 WDR3Q9UNX4 943 aaKnown RBP eCLIP8.54□□□□□ -1.04
LIMCH1-201ENST00000313860 ELMSAN1Q6PJG2 1045 aa8.53□□□□□ -1.04
LIMCH1-201ENST00000313860 CTAGE3PQ8IX95 158 aa8.53□□□□□ -1.04
LIMCH1-201ENST00000313860 PROCA1Q8NCQ7 364 aaPredicted RBP8.53□□□□□ -1.04
LIMCH1-201ENST00000313860 NECTIN2Q92692 538 aa8.53□□□□□ -1.04
LIMCH1-201ENST00000313860 ZNF229Q9UJW7 825 aa8.53□□□□□ -1.04
LIMCH1-201ENST00000313860 IQCA1LA6NCM1 817 aa8.53□□□□□ -1.04
LIMCH1-201ENST00000313860 GIGYF1O75420 1035 aaPredicted RBP8.53□□□□□ -1.04
LIMCH1-201ENST00000313860 YEATS4O95619 227 aa8.53□□□□□ -1.04
LIMCH1-201ENST00000313860 PLCB3Q01970 1234 aa8.53□□□□□ -1.04
LIMCH1-201ENST00000313860 NEUROG2Q9H2A3 272 aa8.53□□□□□ -1.04
LIMCH1-201ENST00000313860 COG4Q9H9E3 785 aa8.53□□□□□ -1.04
LIMCH1-201ENST00000313860 VPS37BQ9H9H4 285 aa8.53□□□□□ -1.04
LIMCH1-201ENST00000313860 ARHGEF3Q9NR81 526 aa8.53□□□□□ -1.04
LIMCH1-201ENST00000313860 TXLNGQ9NUQ3 528 aa8.53□□□□□ -1.04
LIMCH1-201ENST00000313860 PCDHGA3Q9Y5H0 932 aa8.53□□□□□ -1.04
LIMCH1-201ENST00000313860 FAM170AA1A519 330 aa8.53□□□□□ -1.04
LIMCH1-201ENST00000313860 KRT4P19013 534 aa8.53□□□□□ -1.04
LIMCH1-201ENST00000313860 CTTNQ14247 550 aaKnown RBP8.53□□□□□ -1.04
LIMCH1-201ENST00000313860 AEBP2Q6ZN18 517 aaPredicted RBP8.53□□□□□ -1.04
LIMCH1-201ENST00000313860 SIL1Q9H173 461 aa8.53□□□□□ -1.04
LIMCH1-201ENST00000313860 TRPC1P48995 793 aa8.53□□□□□ -1.04
LIMCH1-201ENST00000313860 PLEKHM3Q6ZWE6 761 aa8.53□□□□□ -1.04
LIMCH1-201ENST00000313860 RAPH1Q70E73 1250 aa8.53□□□□□ -1.04
LIMCH1-201ENST00000313860 CSGALNACT2Q8N6G5 542 aa8.53□□□□□ -1.04
LIMCH1-201ENST00000313860 LARP6Q9BRS8 491 aaKnown RBP8.53□□□□□ -1.04
LIMCH1-201ENST00000313860 PAPOLBQ9NRJ5 636 aaKnown RBP8.53□□□□□ -1.04
LIMCH1-201ENST00000313860 NKIRAS1Q9NYS0 192 aa8.53□□□□□ -1.04
LIMCH1-201ENST00000313860 BAG5Q9UL15 447 aa8.53□□□□□ -1.04
LIMCH1-201ENST00000313860 ATF4P18848 351 aaPredicted RBP8.53□□□□□ -1.04
LIMCH1-201ENST00000313860 INTS3Q68E01 1043 aaKnown RBP8.53□□□□□ -1.04
LIMCH1-201ENST00000313860 CCDC149Q6ZUS6 474 aa8.53□□□□□ -1.04
LIMCH1-201ENST00000313860 GPR101Q96P66 508 aaPredicted RBP8.53□□□□□ -1.04
LIMCH1-201ENST00000313860 OLFML2BQ68BL8 750 aa8.52□□□□□ -1.04
LIMCH1-201ENST00000313860 DPH6Q7L8W6 267 aa8.52□□□□□ -1.04
LIMCH1-201ENST00000313860 RILPQ96NA2 401 aa8.52□□□□□ -1.04
LIMCH1-201ENST00000313860 CCDC171Q6TFL3 1326 aa8.52□□□□□ -1.05
LIMCH1-201ENST00000313860 GIPC1O14908 333 aa8.52□□□□□ -1.05
LIMCH1-201ENST00000313860 DDHD2O94830 711 aa8.52□□□□□ -1.05
LIMCH1-201ENST00000313860 MCM2P49736 904 aa8.52□□□□□ -1.05
LIMCH1-201ENST00000313860 NXNQ6DKJ4 435 aa8.52□□□□□ -1.05
LIMCH1-201ENST00000313860 PPP4R3AQ6IN85 833 aa8.52□□□□□ -1.05
LIMCH1-201ENST00000313860 PHLDB3Q6NSJ2 640 aa8.52□□□□□ -1.05
LIMCH1-201ENST00000313860 C22orf23Q9BZE7 217 aa8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms