RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 EEPD1Q7L9B9 569 aa8.85□□□□□ -0.99
SCN9A-201ENST00000303354 TTC30BQ8N4P2 665 aa8.85□□□□□ -0.99
SCN9A-201ENST00000303354 DCAF5Q96JK2 942 aa8.85□□□□□ -0.99
SCN9A-201ENST00000303354 IQGAP2Q13576 1575 aa8.85□□□□□ -0.99
SCN9A-201ENST00000303354 A0A1W2PRG0 241 aa8.85□□□□□ -0.99
SCN9A-201ENST00000303354 HAUS7Q99871 368 aa8.85□□□□□ -0.99
SCN9A-201ENST00000303354 CCT6AP40227 531 aaKnown RBP8.84□□□□□ -0.99
SCN9A-201ENST00000303354 ZNF790Q6PG37 636 aa8.84□□□□□ -0.99
SCN9A-201ENST00000303354 CCDC114Q96M63 670 aa8.84□□□□□ -0.99
SCN9A-201ENST00000303354 FNBP1Q96RU3 617 aa8.84□□□□□ -0.99
SCN9A-201ENST00000303354 DBNDD2Q9BQY9 259 aa8.84□□□□□ -0.99
SCN9A-201ENST00000303354 TBC1D2Q9BYX2 928 aa8.84□□□□□ -0.99
SCN9A-201ENST00000303354 NCOA5Q9HCD5 579 aaKnown RBP8.84□□□□□ -0.99
SCN9A-201ENST00000303354 GRIN2AQ12879 1464 aa8.84□□□□□ -0.99
SCN9A-201ENST00000303354 DHX29Q7Z478 1369 aaKnown RBP8.84□□□□□ -0.99
SCN9A-201ENST00000303354 UBASH3AP57075 661 aa8.84□□□□□ -0.99
SCN9A-201ENST00000303354 AOPEPQ8N6M6 819 aa8.84□□□□□ -0.99
SCN9A-201ENST00000303354 NPATQ14207 1427 aa8.84□□□□□ -0.99
SCN9A-201ENST00000303354 MAP3K19Q56UN5 1328 aa8.84□□□□□ -0.99
SCN9A-201ENST00000303354 ZBED4O75132 1171 aa8.84□□□□□ -0.99
SCN9A-201ENST00000303354 IQCEQ6IPM2 695 aa8.84□□□□□ -0.99
SCN9A-201ENST00000303354 LRRC47Q8N1G4 583 aaKnown RBP8.84□□□□□ -0.99
SCN9A-201ENST00000303354 ARHGEF10LQ9HCE6 1279 aa8.84□□□□□ -0.99
SCN9A-201ENST00000303354 SH2B1Q9NRF2 756 aaPredicted RBP8.84□□□□□ -0.99
SCN9A-201ENST00000303354 LPXNO60711 386 aa8.84□□□□□ -0.99
SCN9A-201ENST00000303354 ATP8B2P98198 1209 aa8.84□□□□□ -0.99
SCN9A-201ENST00000303354 ANO6Q4KMQ2 910 aa8.84□□□□□ -0.99
SCN9A-201ENST00000303354 MIGA2Q7L4E1 593 aa8.84□□□□□ -0.99
SCN9A-201ENST00000303354 DENND2AQ9ULE3 1009 aa8.84□□□□□ -0.99
SCN9A-201ENST00000303354 CEP83Q9Y592 693 aa8.84□□□□□ -0.99
SCN9A-201ENST00000303354 CSADQ9Y600 493 aa8.84□□□□□ -0.99
SCN9A-201ENST00000303354 ALAS1P13196 640 aa8.84□□□□□ -0.99
SCN9A-201ENST00000303354 NELFCDQ8IXH7 590 aa8.84□□□□□ -0.99
SCN9A-201ENST00000303354 V9GY48 417 aaPredicted RBP8.84□□□□□ -0.99
SCN9A-201ENST00000303354 AKR1B10O60218 316 aa8.84□□□□□ -0.99
SCN9A-201ENST00000303354 ZAP70P43403 619 aa8.84□□□□□ -0.99
SCN9A-201ENST00000303354 CEP63Q96MT8 703 aa8.84□□□□□ -0.99
SCN9A-201ENST00000303354 NKTRP30414 1462 aaKnown RBP8.84□□□□□ -0.99
SCN9A-201ENST00000303354 PDE8AO60658 829 aa8.84□□□□□ -0.99
SCN9A-201ENST00000303354 ZBTB7AO95365 584 aa8.84□□□□□ -0.99
SCN9A-201ENST00000303354 PDE1AP54750 535 aa8.84□□□□□ -0.99
SCN9A-201ENST00000303354 GTF3C6Q969F1 213 aa8.84□□□□□ -0.99
SCN9A-201ENST00000303354 DNAJC25Q9H1X3 360 aa8.84□□□□□ -0.99
SCN9A-201ENST00000303354 DAPK3O43293 454 aa8.83□□□□□ -1
SCN9A-201ENST00000303354 ARPP19P56211 112 aa8.83□□□□□ -1
SCN9A-201ENST00000303354 THRAP3Q9Y2W1 955 aaKnown RBP8.83□□□□□ -1
SCN9A-201ENST00000303354 ADCY5O95622 1261 aa8.83□□□□□ -1
SCN9A-201ENST00000303354 C4orf50Q6ZRC1 276 aa8.83□□□□□ -1
SCN9A-201ENST00000303354 SPICE1Q8N0Z3 855 aa8.83□□□□□ -1
SCN9A-201ENST00000303354 PCDHB15Q9Y5E8 787 aa8.83□□□□□ -1
SCN9A-201ENST00000303354 PTPROQ16827 1216 aa8.83□□□□□ -1
SCN9A-201ENST00000303354 RAD17O75943 681 aa8.83□□□□□ -1
SCN9A-201ENST00000303354 CCDC117Q8IWD4 279 aaPredicted RBP8.83□□□□□ -1
SCN9A-201ENST00000303354 SDR42E1Q8WUS8 393 aa8.83□□□□□ -1
SCN9A-201ENST00000303354 PPP1R9BQ96SB3 815 aa8.83□□□□□ -1
SCN9A-201ENST00000303354 CWC15Q9P013 229 aaKnown RBP8.83□□□□□ -1
SCN9A-201ENST00000303354 DTHD1Q6ZMT9 781 aa8.83□□□□□ -1
SCN9A-201ENST00000303354 TTC6Q86TZ1 520 aa8.83□□□□□ -1
SCN9A-201ENST00000303354 IP6K1Q92551 441 aa8.83□□□□□ -1
SCN9A-201ENST00000303354 EIF3JO75822 258 aaKnown RBP8.83□□□□□ -1
SCN9A-201ENST00000303354 STAMBPO95630 424 aa8.83□□□□□ -1
SCN9A-201ENST00000303354 PSMC4P43686 418 aa8.83□□□□□ -1
SCN9A-201ENST00000303354 USP48Q86UV5 1035 aa8.83□□□□□ -1
SCN9A-201ENST00000303354 PHKBQ93100 1093 aa8.83□□□□□ -1
SCN9A-201ENST00000303354 CNNM2Q9H8M5 875 aa8.83□□□□□ -1
SCN9A-201ENST00000303354 SYNJ2BP-COX16A0A087WUM0 186 aa8.83□□□□□ -1
SCN9A-201ENST00000303354 KIF22Q14807 665 aa8.83□□□□□ -1
SCN9A-201ENST00000303354 SCAND2PQ9GZW5 306 aaPredicted RBP8.83□□□□□ -1
SCN9A-201ENST00000303354 MLXIPQ9HAP2 919 aa8.83□□□□□ -1
SCN9A-201ENST00000303354 COX16Q9P0S2 106 aa8.83□□□□□ -1
SCN9A-201ENST00000303354 NOL12Q9UGY1 213 aaKnown RBP eCLIP8.83□□□□□ -1
SCN9A-201ENST00000303354 V9GYY5 206 aaPredicted RBP8.83□□□□□ -1
SCN9A-201ENST00000303354 KIAA0753Q2KHM9 967 aa8.83□□□□□ -1
SCN9A-201ENST00000303354 TMCO4Q5TGY1 634 aa8.83□□□□□ -1
SCN9A-201ENST00000303354 TRAF3IP1Q8TDR0 691 aaPredicted RBP8.83□□□□□ -1
SCN9A-201ENST00000303354 MED10Q9BTT4 135 aa8.83□□□□□ -1
SCN9A-201ENST00000303354 PRXQ9BXM0 1461 aa8.82□□□□□ -1
SCN9A-201ENST00000303354 LONRF3Q496Y0 759 aa8.82□□□□□ -1
SCN9A-201ENST00000303354 SUCLG2Q96I99 432 aa8.82□□□□□ -1
SCN9A-201ENST00000303354 FAM227BQ96M60 508 aa8.82□□□□□ -1
SCN9A-201ENST00000303354 RTEL1Q9NZ71 1219 aa8.82□□□□□ -1
SCN9A-201ENST00000303354 CTNND2Q9UQB3 1225 aa8.82□□□□□ -1
SCN9A-201ENST00000303354 PTPN23Q9H3S7 1636 aa8.82□□□□□ -1
SCN9A-201ENST00000303354 FERP16591 822 aa8.82□□□□□ -1
SCN9A-201ENST00000303354 CREB3L3Q68CJ9 461 aa8.82□□□□□ -1
SCN9A-201ENST00000303354 TAB3Q8N5C8 712 aaPredicted RBP8.82□□□□□ -1
SCN9A-201ENST00000303354 ESYT1Q9BSJ8 1104 aa8.82□□□□□ -1
SCN9A-201ENST00000303354 IKBKGQ9Y6K9 419 aa8.82□□□□□ -1
SCN9A-201ENST00000303354 KMT5BQ4FZB7 885 aa8.82□□□□□ -1
SCN9A-201ENST00000303354 ALS2CR12Q96Q35 445 aa8.82□□□□□ -1
SCN9A-201ENST00000303354 MAK16Q9BXY0 300 aaKnown RBP8.82□□□□□ -1
SCN9A-201ENST00000303354 AGTPBP1Q9UPW5 1226 aa8.82□□□□□ -1
SCN9A-201ENST00000303354 KDM5BQ9UGL1 1544 aa8.82□□□□□ -1
SCN9A-201ENST00000303354 FSD2A1L4K1 749 aa8.82□□□□□ -1
SCN9A-201ENST00000303354 AK2P54819 239 aa8.82□□□□□ -1
SCN9A-201ENST00000303354 UBXN1Q04323 297 aa8.82□□□□□ -1
SCN9A-201ENST00000303354 TTLL7Q6ZT98 887 aa8.82□□□□□ -1
SCN9A-201ENST00000303354 OTUD7AQ8TE49 926 aaPredicted RBP8.82□□□□□ -1
SCN9A-201ENST00000303354 TRPC6Q9Y210 931 aa8.82□□□□□ -1
SCN9A-201ENST00000303354 KCNJ14Q9UNX9 436 aa8.82□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms