RNA–Protein interactions for RNA: ENST00000284770.9

PDLIM3-202, Transcript of PDZ and LIM domain 3, humanhuman

TSL 1 (best) BASIC

Gene PDLIM3, Length 1,766 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-202ENST00000284770 FBXW7Q969H0 707 aa22.73■■□□□ 1.23
PDLIM3-202ENST00000284770 SUGT1Q9Y2Z0 365 aa22.73■■□□□ 1.23
PDLIM3-202ENST00000284770 MAST3O60307 1309 aa22.73■■□□□ 1.23
PDLIM3-202ENST00000284770 USP17L3A6NCW0 530 aa22.73■■□□□ 1.23
PDLIM3-202ENST00000284770 USP17L4A6NCW7 530 aa22.73■■□□□ 1.23
PDLIM3-202ENST00000284770 YDJCA8MPS7 323 aa22.73■■□□□ 1.23
PDLIM3-202ENST00000284770 M0R2C6 588 aa22.73■■□□□ 1.23
PDLIM3-202ENST00000284770 EPB41L2O43491 1005 aaKnown RBP22.73■■□□□ 1.23
PDLIM3-202ENST00000284770 GRIK5Q16478 980 aa22.73■■□□□ 1.23
PDLIM3-202ENST00000284770 NAA16Q6N069 864 aaPredicted RBP22.73■■□□□ 1.23
PDLIM3-202ENST00000284770 USP17L1Q7RTZ2 530 aa22.73■■□□□ 1.23
PDLIM3-202ENST00000284770 NIM1KQ8IY84 436 aa22.73■■□□□ 1.23
PDLIM3-202ENST00000284770 ZNF384Q8TF68 577 aa22.73■■□□□ 1.23
PDLIM3-202ENST00000284770 CCDC129Q6ZRS4 1044 aa22.72■■□□□ 1.23
PDLIM3-202ENST00000284770 DZIP1Q86YF9 867 aaKnown RBP22.72■■□□□ 1.23
PDLIM3-202ENST00000284770 LSG1Q9H089 658 aaKnown RBP22.72■■□□□ 1.23
PDLIM3-202ENST00000284770 ZNRF3Q9ULT6 936 aa22.72■■□□□ 1.23
PDLIM3-202ENST00000284770 CCDC171Q6TFL3 1326 aa22.72■■□□□ 1.23
PDLIM3-202ENST00000284770 COL4A5P29400 1685 aa22.72■■□□□ 1.23
PDLIM3-202ENST00000284770 CYP7A1P22680 504 aa22.71■■□□□ 1.23
PDLIM3-202ENST00000284770 RBM25P49756 843 aaKnown RBP22.71■■□□□ 1.23
PDLIM3-202ENST00000284770 FKBP1AP62942 108 aaKnown RBP22.71■■□□□ 1.23
PDLIM3-202ENST00000284770 RASSF7Q02833 373 aa22.71■■□□□ 1.23
PDLIM3-202ENST00000284770 DACT2Q5SW24 774 aa22.71■■□□□ 1.23
PDLIM3-202ENST00000284770 ARHGAP27Q6ZUM4 889 aa22.71■■□□□ 1.23
PDLIM3-202ENST00000284770 CERS5Q8N5B7 392 aa22.71■■□□□ 1.23
PDLIM3-202ENST00000284770 JDP2Q8WYK2 163 aa22.71■■□□□ 1.23
PDLIM3-202ENST00000284770 SRCAPQ6ZRS2 3230 aa22.7■■□□□ 1.22
PDLIM3-202ENST00000284770 ADGRA1Q86SQ6 560 aa22.7■■□□□ 1.22
PDLIM3-202ENST00000284770 GPAA1O43292 621 aa22.69■■□□□ 1.22
PDLIM3-202ENST00000284770 GSTO1P78417 241 aa22.69■■□□□ 1.22
PDLIM3-202ENST00000284770 MXD3Q9BW11 206 aa22.69■■□□□ 1.22
PDLIM3-202ENST00000284770 SCN9AQ15858 1988 aa22.69■■□□□ 1.22
PDLIM3-202ENST00000284770 YBX3P16989 372 aaKnown RBP eCLIP22.68■■□□□ 1.22
PDLIM3-202ENST00000284770 PTH1RQ03431 593 aa22.68■■□□□ 1.22
PDLIM3-202ENST00000284770 AIDAQ96BJ3 306 aa22.68■■□□□ 1.22
PDLIM3-202ENST00000284770 PRELPP51888 382 aa22.68■■□□□ 1.22
PDLIM3-202ENST00000284770 MAP4K1Q92918 833 aa22.68■■□□□ 1.22
PDLIM3-202ENST00000284770 MAST2Q6P0Q8 1798 aa22.68■■□□□ 1.22
PDLIM3-202ENST00000284770 CCDC88AQ3V6T2 1871 aa22.67■■□□□ 1.22
PDLIM3-202ENST00000284770 MBD4O95243 580 aa22.66■■□□□ 1.22
PDLIM3-202ENST00000284770 LDHCP07864 332 aa22.66■■□□□ 1.22
PDLIM3-202ENST00000284770 DIXDC1Q155Q3 683 aa22.66■■□□□ 1.22
PDLIM3-202ENST00000284770 SLF2Q8IX21 1173 aa22.66■■□□□ 1.22
PDLIM3-202ENST00000284770 MIGA1Q8NAN2 632 aa22.66■■□□□ 1.22
PDLIM3-202ENST00000284770 STRBPQ96SI9 672 aaKnown RBP22.66■■□□□ 1.22
PDLIM3-202ENST00000284770 MAGEB6P1A0A0J9YX57 407 aa22.66■■□□□ 1.22
PDLIM3-202ENST00000284770 RAD17O75943 681 aa22.66■■□□□ 1.22
PDLIM3-202ENST00000284770 VIL1P09327 827 aaKnown RBP22.66■■□□□ 1.22
PDLIM3-202ENST00000284770 HSPD1P10809 573 aaKnown RBP22.66■■□□□ 1.22
PDLIM3-202ENST00000284770 DSCC1Q9BVC3 393 aa22.66■■□□□ 1.22
PDLIM3-202ENST00000284770 TTF2Q9UNY4 1162 aaKnown RBP22.66■■□□□ 1.22
PDLIM3-202ENST00000284770 VPS53Q5VIR6 699 aa22.65■■□□□ 1.22
PDLIM3-202ENST00000284770 FAM163AQ96GL9 167 aaPredicted RBP22.65■■□□□ 1.22
PDLIM3-202ENST00000284770 RIOK1Q9BRS2 568 aaKnown RBP22.65■■□□□ 1.22
PDLIM3-202ENST00000284770 ARMT1Q9H993 441 aa22.65■■□□□ 1.22
PDLIM3-202ENST00000284770 ZNF646O15015 1829 aaPredicted RBP22.64■■□□□ 1.22
PDLIM3-202ENST00000284770 F8W031 263 aaPredicted RBP22.64■■□□□ 1.22
PDLIM3-202ENST00000284770 PSMD14O00487 310 aa22.64■■□□□ 1.22
PDLIM3-202ENST00000284770 LMNB1P20700 586 aa22.64■■□□□ 1.22
PDLIM3-202ENST00000284770 CXCL9Q07325 125 aa22.64■■□□□ 1.22
PDLIM3-202ENST00000284770 LCORLQ8N3X6 602 aa22.64■■□□□ 1.22
PDLIM3-202ENST00000284770 MROH7-TTC4A0A0A0MT08 1334 aa22.64■■□□□ 1.21
PDLIM3-202ENST00000284770 MYO3BQ8WXR4 1341 aa22.64■■□□□ 1.21
PDLIM3-202ENST00000284770 MCCP23508 829 aa22.63■■□□□ 1.21
PDLIM3-202ENST00000284770 RSBN1LQ6PCB5 846 aaPredicted RBP22.63■■□□□ 1.21
PDLIM3-202ENST00000284770 PSME4Q14997 1843 aa22.63■■□□□ 1.21
PDLIM3-202ENST00000284770 FZD9O00144 591 aa22.63■■□□□ 1.21
PDLIM3-202ENST00000284770 GNAT2P19087 354 aa22.63■■□□□ 1.21
PDLIM3-202ENST00000284770 HSPA4P34932 840 aa22.63■■□□□ 1.21
PDLIM3-202ENST00000284770 KIAA0825Q8IV33 1275 aa22.63■■□□□ 1.21
PDLIM3-202ENST00000284770 MRIQ9BWK5 157 aa22.63■■□□□ 1.21
PDLIM3-202ENST00000284770 AATFQ9NY61 560 aaKnown RBP eCLIP22.63■■□□□ 1.21
PDLIM3-202ENST00000284770 RBM8AQ9Y5S9 174 aaKnown RBP22.63■■□□□ 1.21
PDLIM3-202ENST00000284770 FOXP2O15409 715 aa22.62■■□□□ 1.21
PDLIM3-202ENST00000284770 DYNLL1P63167 89 aaKnown RBP22.62■■□□□ 1.21
PDLIM3-202ENST00000284770 NECTIN1Q15223 517 aa22.62■■□□□ 1.21
PDLIM3-202ENST00000284770 CIAPIN1Q6FI81 312 aa22.62■■□□□ 1.21
PDLIM3-202ENST00000284770 IPO9Q96P70 1041 aaKnown RBP22.62■■□□□ 1.21
PDLIM3-202ENST00000284770 KIF2CQ99661 725 aa22.62■■□□□ 1.21
PDLIM3-202ENST00000284770 GAKO14976 1311 aa22.62■■□□□ 1.21
PDLIM3-202ENST00000284770 GPR75-ASB3A0A0A6YYF3 556 aa22.61■■□□□ 1.21
PDLIM3-202ENST00000284770 PATL2C9JE40 543 aaKnown RBP22.61■■□□□ 1.21
PDLIM3-202ENST00000284770 BAG3O95817 575 aa22.61■■□□□ 1.21
PDLIM3-202ENST00000284770 PPP4CP60510 307 aa22.61■■□□□ 1.21
PDLIM3-202ENST00000284770 U3KPZ7 1027 aaPredicted RBP22.61■■□□□ 1.21
PDLIM3-202ENST00000284770 HDLBPQ00341 1268 aaKnown RBP22.61■■□□□ 1.21
PDLIM3-202ENST00000284770 TNIP1Q15025 636 aa22.61■■□□□ 1.21
PDLIM3-202ENST00000284770 GPR162Q16538 588 aa22.61■■□□□ 1.21
PDLIM3-202ENST00000284770 HHIPL2Q6UWX4 724 aa22.61■■□□□ 1.21
PDLIM3-202ENST00000284770 CERS3Q8IU89 383 aa22.61■■□□□ 1.21
PDLIM3-202ENST00000284770 GMLQ99445 158 aa22.61■■□□□ 1.21
PDLIM3-202ENST00000284770 NOL10Q9BSC4 688 aaKnown RBP22.61■■□□□ 1.21
PDLIM3-202ENST00000284770 SCNN1DP51172 638 aa22.6■■□□□ 1.21
PDLIM3-202ENST00000284770 AGBL3Q8NEM8 1001 aa22.6■■□□□ 1.21
PDLIM3-202ENST00000284770 TEKT1Q969V4 418 aa22.6■■□□□ 1.21
PDLIM3-202ENST00000284770 DAGLAQ9Y4D2 1042 aa22.6■■□□□ 1.21
PDLIM3-202ENST00000284770 SLC4A4Q9Y6R1 1079 aa22.6■■□□□ 1.21
PDLIM3-202ENST00000284770 EIF6P56537 245 aaKnown RBP22.59■■□□□ 1.21
PDLIM3-202ENST00000284770 DDRGK1Q96HY6 314 aa22.59■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms