RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 ALDH1L2Q3SY69 923 aa15.99■□□□□ 0.15
CD44-203ENST00000278386 VGLL2Q8N8G2 317 aa15.99■□□□□ 0.15
CD44-203ENST00000278386 TBC1D22AQ8WUA7 517 aa15.99■□□□□ 0.15
CD44-203ENST00000278386 IFIT1P09914 478 aaKnown RBP15.98■□□□□ 0.15
CD44-203ENST00000278386 PUM3Q15397 648 aaKnown RBP15.98■□□□□ 0.15
CD44-203ENST00000278386 NOM1Q5C9Z4 860 aaKnown RBP15.98■□□□□ 0.15
CD44-203ENST00000278386 FBXO33Q7Z6M2 555 aa15.98■□□□□ 0.15
CD44-203ENST00000278386 IFNL1Q8IU54 200 aa15.98■□□□□ 0.15
CD44-203ENST00000278386 ANKRD13AQ8IZ07 590 aa15.98■□□□□ 0.15
CD44-203ENST00000278386 CDCA7LQ96GN5 454 aa15.98■□□□□ 0.15
CD44-203ENST00000278386 CFHR5Q9BXR6 569 aa15.98■□□□□ 0.15
CD44-203ENST00000278386 USP44Q9H0E7 712 aa15.98■□□□□ 0.15
CD44-203ENST00000278386 UNCXA6NJT0 531 aa15.97■□□□□ 0.15
CD44-203ENST00000278386 USP2O75604 605 aaPredicted RBP15.97■□□□□ 0.15
CD44-203ENST00000278386 BCAMP50895 628 aa15.97■□□□□ 0.15
CD44-203ENST00000278386 INHBEP58166 350 aa15.97■□□□□ 0.15
CD44-203ENST00000278386 GRIK5Q16478 980 aa15.97■□□□□ 0.15
CD44-203ENST00000278386 CDAN1Q8IWY9 1227 aa15.97■□□□□ 0.15
CD44-203ENST00000278386 TEKT1Q969V4 418 aa15.97■□□□□ 0.15
CD44-203ENST00000278386 TMEM39BQ9GZU3 492 aa15.97■□□□□ 0.15
CD44-203ENST00000278386 R3HDMLQ9H3Y0 253 aa15.97■□□□□ 0.15
CD44-203ENST00000278386 ELP3Q9H9T3 547 aa15.97■□□□□ 0.15
CD44-203ENST00000278386 MAST3O60307 1309 aa15.96■□□□□ 0.15
CD44-203ENST00000278386 IGF2BP3O00425 579 aaKnown RBP eCLIP15.96■□□□□ 0.15
CD44-203ENST00000278386 UBTFL1P0CB47 393 aaPredicted RBP15.96■□□□□ 0.15
CD44-203ENST00000278386 SLC5A1P13866 664 aa15.96■□□□□ 0.15
CD44-203ENST00000278386 OPTNQ96CV9 577 aa15.96■□□□□ 0.15
CD44-203ENST00000278386 TMOD2Q9NZR1 351 aa15.96■□□□□ 0.15
CD44-203ENST00000278386 TNRC18O15417 2968 aaPredicted RBP15.96■□□□□ 0.14
CD44-203ENST00000278386 KIF16BQ96L93 1317 aa15.95■□□□□ 0.14
CD44-203ENST00000278386 PDE4DIPQ5VU43 2346 aa15.95■□□□□ 0.14
CD44-203ENST00000278386 EYA2O00167 538 aa15.95■□□□□ 0.14
CD44-203ENST00000278386 GJA5P36382 358 aa15.95■□□□□ 0.14
CD44-203ENST00000278386 CACNB3P54284 484 aa15.95■□□□□ 0.14
CD44-203ENST00000278386 OTUD7BQ6GQQ9 843 aa15.95■□□□□ 0.14
CD44-203ENST00000278386 FBXO46Q6PJ61 603 aaPredicted RBP15.95■□□□□ 0.14
CD44-203ENST00000278386 SIL1Q9H173 461 aa15.95■□□□□ 0.14
CD44-203ENST00000278386 DOCK2Q92608 1830 aa15.94■□□□□ 0.14
CD44-203ENST00000278386 RFX5P48382 616 aaPredicted RBP15.94■□□□□ 0.14
CD44-203ENST00000278386 HDLBPQ00341 1268 aaKnown RBP15.94■□□□□ 0.14
CD44-203ENST00000278386 TEPSINQ96N21 525 aa15.94■□□□□ 0.14
CD44-203ENST00000278386 CSADQ9Y600 493 aa15.94■□□□□ 0.14
CD44-203ENST00000278386 MYH2Q9UKX2 1941 aa15.94■□□□□ 0.14
CD44-203ENST00000278386 FGFR2P21802 821 aa15.93■□□□□ 0.14
CD44-203ENST00000278386 LPIN2Q92539 896 aa15.93■□□□□ 0.14
CD44-203ENST00000278386 NOB1Q9ULX3 412 aaKnown RBP15.93■□□□□ 0.14
CD44-203ENST00000278386 TRIM17Q9Y577 477 aa15.93■□□□□ 0.14
CD44-203ENST00000278386 CT47B1P0C2W7 299 aaPredicted RBP15.92■□□□□ 0.14
CD44-203ENST00000278386 CRHR2Q13324 411 aa15.92■□□□□ 0.14
CD44-203ENST00000278386 VGLL4Q14135 290 aa15.92■□□□□ 0.14
CD44-203ENST00000278386 ZDHHC15Q96MV8 337 aa15.92■□□□□ 0.14
CD44-203ENST00000278386 API5Q9BZZ5 524 aaKnown RBP15.92■□□□□ 0.14
CD44-203ENST00000278386 SUGT1Q9Y2Z0 365 aa15.92■□□□□ 0.14
CD44-203ENST00000278386 RPAP1Q9BWH6 1393 aaPredicted RBP15.91■□□□□ 0.14
CD44-203ENST00000278386 RBBP6Q7Z6E9 1792 aaKnown RBP15.91■□□□□ 0.14
CD44-203ENST00000278386 MAP3K9P80192 1104 aa15.91■□□□□ 0.14
CD44-203ENST00000278386 ATP2B3Q16720 1220 aa15.91■□□□□ 0.14
CD44-203ENST00000278386 PPP1R3FQ6ZSY5 799 aaPredicted RBP15.91■□□□□ 0.14
CD44-203ENST00000278386 ATG9AQ7Z3C6 839 aa15.91■□□□□ 0.14
CD44-203ENST00000278386 WDR66Q8TBY9 1149 aa15.91■□□□□ 0.14
CD44-203ENST00000278386 CD99L2Q8TCZ2 262 aa15.91■□□□□ 0.14
CD44-203ENST00000278386 CNKSR2Q8WXI2 1034 aa15.91■□□□□ 0.14
CD44-203ENST00000278386 OTUD5Q96G74 571 aa15.91■□□□□ 0.14
CD44-203ENST00000278386 ERO1AQ96HE7 468 aa15.91■□□□□ 0.14
CD44-203ENST00000278386 LRRFIP2Q9Y608 721 aaKnown RBP15.91■□□□□ 0.14
CD44-203ENST00000278386 CCL15-CCL14A0A0B4J2E2 113 aa15.9■□□□□ 0.14
CD44-203ENST00000278386 CCL15Q16663 113 aa15.9■□□□□ 0.14
CD44-203ENST00000278386 OTOP1Q7RTM1 612 aa15.9■□□□□ 0.14
CD44-203ENST00000278386 TRMT2AQ8IZ69 625 aaKnown RBP15.9■□□□□ 0.14
CD44-203ENST00000278386 DDX55Q8NHQ9 600 aaKnown RBP eCLIP15.9■□□□□ 0.14
CD44-203ENST00000278386 HOOK2Q96ED9 719 aa15.9■□□□□ 0.14
CD44-203ENST00000278386 WRNIP1Q96S55 665 aa15.9■□□□□ 0.14
CD44-203ENST00000278386 HDAC5Q9UQL6 1122 aa15.9■□□□□ 0.14
CD44-203ENST00000278386 ZSWIM8A7E2V4 1837 aa15.89■□□□□ 0.13
CD44-203ENST00000278386 CIAO1O76071 339 aa15.89■□□□□ 0.13
CD44-203ENST00000278386 GTF2A2P52657 109 aa15.89■□□□□ 0.13
CD44-203ENST00000278386 TAF1CQ15572 869 aaPredicted RBP15.89■□□□□ 0.13
CD44-203ENST00000278386 DCAF15Q66K64 600 aa15.89■□□□□ 0.13
CD44-203ENST00000278386 APOBEC3HQ6NTF7 200 aaKnown RBP15.89■□□□□ 0.13
CD44-203ENST00000278386 HHIPL2Q6UWX4 724 aa15.89■□□□□ 0.13
CD44-203ENST00000278386 FAM83AQ86UY5 434 aa15.89■□□□□ 0.13
CD44-203ENST00000278386 PTPN18Q99952 460 aa15.89■□□□□ 0.13
CD44-203ENST00000278386 GNL3LQ9NVN8 582 aaKnown RBP15.89■□□□□ 0.13
CD44-203ENST00000278386 CEP126Q9P2H0 1117 aa15.89■□□□□ 0.13
CD44-203ENST00000278386 FBXO3Q9UK99 471 aa15.89■□□□□ 0.13
CD44-203ENST00000278386 TESPA1A2RU30 521 aaPredicted RBP15.88■□□□□ 0.13
CD44-203ENST00000278386 DIXDC1Q155Q3 683 aa15.88■□□□□ 0.13
CD44-203ENST00000278386 BRI3BPQ8WY22 251 aa15.88■□□□□ 0.13
CD44-203ENST00000278386 MEIS3Q99687 375 aa15.88■□□□□ 0.13
CD44-203ENST00000278386 MRIQ9BWK5 157 aa15.88■□□□□ 0.13
CD44-203ENST00000278386 PA2G4Q9UQ80 394 aaKnown RBP15.88■□□□□ 0.13
CD44-203ENST00000278386 HTTP42858 3142 aa15.88■□□□□ 0.13
CD44-203ENST00000278386 SPDYE5A6NIY4 337 aa15.87■□□□□ 0.13
CD44-203ENST00000278386 LDHBP07195 334 aaKnown RBP15.87■□□□□ 0.13
CD44-203ENST00000278386 PRDX5P30044 214 aa15.87■□□□□ 0.13
CD44-203ENST00000278386 IL15P40933 162 aaPredicted RBP15.87■□□□□ 0.13
CD44-203ENST00000278386 SP3Q02447 781 aa15.87■□□□□ 0.13
CD44-203ENST00000278386 FKBP1CQ5VVH2 108 aa15.87■□□□□ 0.13
CD44-203ENST00000278386 ZKSCAN4Q969J2 545 aaPredicted RBP15.87■□□□□ 0.13
CD44-203ENST00000278386 MS4A4AQ96JQ5 239 aa15.87■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms