RNA–Protein interactions for RNA: ENST00000239243.6

MSX2-201, Transcript of msh homeobox 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX2, Length 2,241 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2-201ENST00000239243 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP27.41■■□□□ 1.98
MSX2-201ENST00000239243 PDIA3P30101 505 aaKnown RBP27.41■■□□□ 1.98
MSX2-201ENST00000239243 CDC37L1Q7L3B6 337 aa27.41■■□□□ 1.98
MSX2-201ENST00000239243 CHST3Q7LGC8 479 aa27.41■■□□□ 1.98
MSX2-201ENST00000239243 NACAP1Q9BZK3 213 aa27.41■■□□□ 1.98
MSX2-201ENST00000239243 NAPBQ9H115 298 aa27.41■■□□□ 1.98
MSX2-201ENST00000239243 JAK2O60674 1132 aa27.4■■□□□ 1.98
MSX2-201ENST00000239243 FAM84BQ96KN1 310 aaPredicted RBP27.4■■□□□ 1.98
MSX2-201ENST00000239243 GDPD2Q9HCC8 539 aa27.4■■□□□ 1.98
MSX2-201ENST00000239243 PDS5AQ29RF7 1337 aaKnown RBP27.4■■□□□ 1.98
MSX2-201ENST00000239243 IFNL3Q8IZI9 196 aa27.4■■□□□ 1.98
MSX2-201ENST00000239243 NSUN7Q8NE18 718 aaKnown RBP27.4■■□□□ 1.98
MSX2-201ENST00000239243 BRWD3Q6RI45 1802 aa27.4■■□□□ 1.98
MSX2-201ENST00000239243 TM4SF1P30408 202 aa27.39■■□□□ 1.98
MSX2-201ENST00000239243 ARMT1Q9H993 441 aa27.39■■□□□ 1.98
MSX2-201ENST00000239243 TNRC6CQ9HCJ0 1690 aaKnown RBP27.39■■□□□ 1.97
MSX2-201ENST00000239243 DHX16O60231 1041 aaKnown RBP27.39■■□□□ 1.97
MSX2-201ENST00000239243 DTNBO60941 627 aa27.39■■□□□ 1.97
MSX2-201ENST00000239243 UBE2HP62256 183 aa27.39■■□□□ 1.97
MSX2-201ENST00000239243 FBXO33Q7Z6M2 555 aa27.39■■□□□ 1.97
MSX2-201ENST00000239243 GAS2L3Q86XJ1 694 aa27.39■■□□□ 1.97
MSX2-201ENST00000239243 NAP1L2Q9ULW6 460 aaPredicted RBP27.39■■□□□ 1.97
MSX2-201ENST00000239243 KRT85P78386 507 aa27.38■■□□□ 1.97
MSX2-201ENST00000239243 NBPF3Q9H094 633 aa27.38■■□□□ 1.97
MSX2-201ENST00000239243 IQSEC3Q9UPP2 1182 aaPredicted RBP27.38■■□□□ 1.97
MSX2-201ENST00000239243 ZBTB22O15209 634 aa27.37■■□□□ 1.97
MSX2-201ENST00000239243 DNM1Q05193 864 aaKnown RBP27.37■■□□□ 1.97
MSX2-201ENST00000239243 TMEM63CQ9P1W3 806 aa27.37■■□□□ 1.97
MSX2-201ENST00000239243 ABCF2Q9UG63 623 aa27.37■■□□□ 1.97
MSX2-201ENST00000239243 H3BQV1 296 aa27.37■■□□□ 1.97
MSX2-201ENST00000239243 ANTXR2P58335 489 aa27.37■■□□□ 1.97
MSX2-201ENST00000239243 IFFO2Q5TF58 517 aa27.37■■□□□ 1.97
MSX2-201ENST00000239243 TBC1D10CQ8IV04 446 aa27.37■■□□□ 1.97
MSX2-201ENST00000239243 CCDC24Q8N4L8 307 aa27.37■■□□□ 1.97
MSX2-201ENST00000239243 RAI14Q9P0K7 980 aa27.37■■□□□ 1.97
MSX2-201ENST00000239243 NSFL1CQ9UNZ2 370 aaKnown RBP27.37■■□□□ 1.97
MSX2-201ENST00000239243 PTPDC1A2A3K4 754 aa27.36■■□□□ 1.97
MSX2-201ENST00000239243 FIBPO43427 364 aa27.36■■□□□ 1.97
MSX2-201ENST00000239243 CYP7A1P22680 504 aa27.36■■□□□ 1.97
MSX2-201ENST00000239243 EPB41L4AQ9HCS5 686 aaPredicted RBP27.36■■□□□ 1.97
MSX2-201ENST00000239243 COL1A1P02452 1464 aaPredicted RBP27.36■■□□□ 1.97
MSX2-201ENST00000239243 CCT2P78371 535 aaKnown RBP27.36■■□□□ 1.97
MSX2-201ENST00000239243 CNNM2Q9H8M5 875 aa27.36■■□□□ 1.97
MSX2-201ENST00000239243 RBM27Q9P2N5 1060 aaKnown RBP27.36■■□□□ 1.97
MSX2-201ENST00000239243 SLC4A4Q9Y6R1 1079 aa27.36■■□□□ 1.97
MSX2-201ENST00000239243 TIAM2Q8IVF5 1701 aa27.35■■□□□ 1.97
MSX2-201ENST00000239243 GSG1L2A8MUP6 293 aa27.35■■□□□ 1.97
MSX2-201ENST00000239243 GRAPQ13588 217 aa27.35■■□□□ 1.97
MSX2-201ENST00000239243 LCORLQ8N3X6 602 aa27.35■■□□□ 1.97
MSX2-201ENST00000239243 GRAPLQ8TC17 118 aaPredicted RBP27.35■■□□□ 1.97
MSX2-201ENST00000239243 DDX11Q96FC9 970 aa27.35■■□□□ 1.97
MSX2-201ENST00000239243 ZSCAN16Q9H4T2 348 aaPredicted RBP27.35■■□□□ 1.97
MSX2-201ENST00000239243 GADD45BO75293 160 aaPredicted RBP27.35■■□□□ 1.97
MSX2-201ENST00000239243 TRIM37O94972 964 aa27.35■■□□□ 1.97
MSX2-201ENST00000239243 HIBADHP31937 336 aaKnown RBP27.35■■□□□ 1.97
MSX2-201ENST00000239243 NAA16Q6N069 864 aaPredicted RBP27.35■■□□□ 1.97
MSX2-201ENST00000239243 TMED8Q6PL24 325 aaPredicted RBP27.35■■□□□ 1.97
MSX2-201ENST00000239243 TMEM87BQ96K49 555 aa27.35■■□□□ 1.97
MSX2-201ENST00000239243 SALL1Q9NSC2 1324 aa27.34■■□□□ 1.97
MSX2-201ENST00000239243 KLF18A0A0U1RQI7 1052 aa27.34■■□□□ 1.97
MSX2-201ENST00000239243 CTDNEP1O95476 244 aa27.34■■□□□ 1.97
MSX2-201ENST00000239243 GYS1P13807 737 aa27.34■■□□□ 1.97
MSX2-201ENST00000239243 ANGEL1Q9UNK9 670 aaKnown RBP27.34■■□□□ 1.97
MSX2-201ENST00000239243 MYH13Q9UKX3 1938 aa27.34■■□□□ 1.97
MSX2-201ENST00000239243 TDO2P48775 406 aa27.33■■□□□ 1.97
MSX2-201ENST00000239243 FERMT3Q86UX7 667 aa27.33■■□□□ 1.97
MSX2-201ENST00000239243 ST5P78524 1137 aa27.33■■□□□ 1.97
MSX2-201ENST00000239243 CHD4Q14839 1912 aa27.32■■□□□ 1.96
MSX2-201ENST00000239243 WTIPA6NIX2 430 aaPredicted RBP27.32■■□□□ 1.96
MSX2-201ENST00000239243 GOLGA8BA8MQT2 603 aa27.32■■□□□ 1.96
MSX2-201ENST00000239243 PRR5LQ6MZQ0 368 aa27.32■■□□□ 1.96
MSX2-201ENST00000239243 KRT23Q9C075 422 aa27.32■■□□□ 1.96
MSX2-201ENST00000239243 SCAND2PQ9GZW5 306 aaPredicted RBP27.32■■□□□ 1.96
MSX2-201ENST00000239243 NCOA5Q9HCD5 579 aaKnown RBP27.32■■□□□ 1.96
MSX2-201ENST00000239243 BRPF3Q9ULD4 1205 aa27.32■■□□□ 1.96
MSX2-201ENST00000239243 ELP1O95163 1332 aa27.32■■□□□ 1.96
MSX2-201ENST00000239243 MAGEB6P1A0A0J9YX57 407 aa27.32■■□□□ 1.96
MSX2-201ENST00000239243 CACNA1SQ13698 1873 aa27.31■■□□□ 1.96
MSX2-201ENST00000239243 MIGA1Q8NAN2 632 aa27.31■■□□□ 1.96
MSX2-201ENST00000239243 LEMD3Q9Y2U8 911 aa27.31■■□□□ 1.96
MSX2-201ENST00000239243 IGSF3O75054 1194 aa27.31■■□□□ 1.96
MSX2-201ENST00000239243 AKNAD1Q5T1N1 836 aa27.31■■□□□ 1.96
MSX2-201ENST00000239243 LRSAM1Q6UWE0 723 aa27.31■■□□□ 1.96
MSX2-201ENST00000239243 GPHNQ9NQX3 736 aaPredicted RBP27.31■■□□□ 1.96
MSX2-201ENST00000239243 ZNF772Q68DY9 489 aaPredicted RBP27.3■■□□□ 1.96
MSX2-201ENST00000239243 RPGRQ92834 1020 aaKnown RBP27.3■■□□□ 1.96
MSX2-201ENST00000239243 B4E1Z4 1266 aa27.29■■□□□ 1.96
MSX2-201ENST00000239243 SH2B2O14492 632 aaPredicted RBP27.29■■□□□ 1.96
MSX2-201ENST00000239243 MFSD6Q6ZSS7 791 aa27.29■■□□□ 1.96
MSX2-201ENST00000239243 RNF41Q9H4P4 317 aaPredicted RBP27.29■■□□□ 1.96
MSX2-201ENST00000239243 NEDD4P46934 1319 aa27.29■■□□□ 1.96
MSX2-201ENST00000239243 PRKAB2O43741 272 aa27.29■■□□□ 1.96
MSX2-201ENST00000239243 SERPINB2P05120 415 aa27.29■■□□□ 1.96
MSX2-201ENST00000239243 RBM6P78332 1123 aaKnown RBP27.29■■□□□ 1.96
MSX2-201ENST00000239243 RESTQ13127 1097 aa27.29■■□□□ 1.96
MSX2-201ENST00000239243 CYB5R4Q7L1T6 521 aa27.29■■□□□ 1.96
MSX2-201ENST00000239243 STAG1Q8WVM7 1258 aa27.29■■□□□ 1.96
MSX2-201ENST00000239243 KLRK1P26718 216 aa27.28■■□□□ 1.96
MSX2-201ENST00000239243 KLHL34Q8N239 644 aa27.28■■□□□ 1.96
MSX2-201ENST00000239243 HPS5Q9UPZ3 1129 aa27.28■■□□□ 1.96
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms